cluster # 10170

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Schistosoma mansoni
cluster # 10170 cluster # 10170 Sequences # 14 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10170#0 length = 898 sequences # 12

consensus_10170#1 length = 419 sequences # 2

consensusID : consensus_10170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 898
fasta sequence

                              [CTCCAGGCCAANAATTTGGCACGAGGTTTAATCAAGCTGCAACAGTCGCAAAATGTTGTAAATAATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATAAGGACCAGTGACACTATTTTCTTTATTTTCTCATAATGGCTT-CTTTTCTTTAAANTA-TGNCCGATATGTCAGTAAGTCATTTCAATC-AAGTGACTGGTCATATAANCTAATT]

[+] EMBL CD081088             [CTCCAGGCCAANAATTTGGCACGAGGTTTAATCAAGCTGCAACAGTCGCAAAATGTTGTAAATAATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCANAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATANGGGACAGTGACACTATTTTCTTTATTTTCTCATAATGGCTT CTTTTCTTTAAANTA TGNCCGATATGTCAGTAAGTCATTTCAATC AAGTGACTGGTCATATAANCTA   ]
[-] EMBL CD074911             [                                                                                                                                                                                                                                              TTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATAAGGACCAGTGACACTATTTTCTTATTTTTCTCATAAT GCTTCCTTTTCTTTAAA TATTGTCCGATATGTCAGTAAGTCATTTCAATCAAAGTGACTGGTCATATAAACTAATT]
[+] EMBL AI067607             [                                                                                                                                                                                                                                                                                                                  TATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATTCTCTGGTATCCTATAACTATCCTCCGGTt                                                                                                                                                                                                ]
[+] EMBL AI068255             [                                                                                                                                                                                                                                                                                                                        AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCANATAGAAACACTGATAAGGACC                                                                                                             ]
[+] EMBL AI067268             [                                                                                                                                                                                                                                                                                                                        AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATAAGG                                                                                                                ]
[+] EMBL AI067749             [                                                                                                                                                                                                                                                                                                                        AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAAC                                                                                                                                                      ]
[+] EMBL AI067867             [                                                                                                                                                                                                                                                                                                                        AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATACAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGACTACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATAAGG                                                                                                                ]
[+] EMBL AI067117             [                                                                                                                                                                                                                                                                                                                        AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGT                                                                                                                                                                                                 ]
[+] EMBL AI067457             [                                                                                                                                                                                                                                                                                                                        AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCC                                                                                                                                                                                                       ]
[+] EMBL AI068036             [                                                                                                                                                                                                                                                                                                                        AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTA                                                                                                                                                                                                                     ]
[+] EMBL AI067064             [                                                                                                                                                                                                                                                                                                                        AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTACACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGGATACATACTAGTG                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD149504             [                                                                                                                                                                                                                                                                                                                                                                                                                                            TGGTGTTATTGGAATGTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTG                                                                                                                                                                                                                                                                 ]




>consensus_10170#0
CTCCAGGCCAANAATTTGGCACGAGGTTTAATCAAGCTGCAACAGTCGCAAAATGTTGTA
AATAATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAA
GAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTC
TGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTT
GGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGG
TTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCT
CAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACG
AAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGA
TAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAA
CTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTC
TGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATAT
TAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAA
AGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACA
CTGATAAGGACCAGTGACACTATTTTCTTTATTTTCTCATAATGGCTTCTTTTCTTTAAA
NTATGNCCGATATGTCAGTAAGTCATTTCAATCAAGTGACTGGTCATATAANCTAATT

consensusID : consensus_10170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 419
fasta sequence

                              [CGAGGCTCATTACATCAAGGTCTTTAATCAGCTGCAACAGTCGCAAAATGTTGTAAATATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGAT]

[+] EMBL CD083997             [CGAGGCTCATTACATCAAGGTCTTTAATCAGCTGCAACAGTCGCAAAATGTTGTAAATATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGAT]
[+] EMBL CD078168             [                                                                                      ttTTCTAATGCACGAAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACC                                                                                                          ]




>consensus_10170#1
CGAGGCTCATTACATCAAGGTCTTTAATCAGCTGCAACAGTCGCAAAATGTTGTAAATAT
ACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACAC
AGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGT
TGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAA
ATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACG
TATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAG
ATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10170#0      CTCCAGGCCAANAATTTGGCACGAGGTTTAATCAAGCTGCAACAGTCGCAAAATGTTGTA 60
consensus_10170#1      --CGAGGCTCATTACAT--CAAGGTCTTTAATCA-GCTGCAACAGTCGCAAAATGTTGTA 55
                         * ****  *  *  *  ** *   ******** *************************

consensus_10170#0      AATAATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAA 120
consensus_10170#1      AATA-TACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAA 114
                       **** *******************************************************

consensus_10170#0      GAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTC 180
consensus_10170#1      GAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTC 174
                       ************************************************************

consensus_10170#0      TGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTT 240
consensus_10170#1      TGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTT 234
                       ************************************************************

consensus_10170#0      GGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGG 300
consensus_10170#1      GGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGG 294
                       ************************************************************

consensus_10170#0      TTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCT 360
consensus_10170#1      TTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCT 354
                       ************************************************************

consensus_10170#0      CAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACG 420
consensus_10170#1      CAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACG 414
                       ************************************************************

consensus_10170#0      AAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGA 480
consensus_10170#1      AAGAT------------------------------------------------------- 419
                       *****                                                       

consensus_10170#0      TAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAA 540
consensus_10170#1      ------------------------------------------------------------
                                                                                   

consensus_10170#0      CTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTC 600
consensus_10170#1      ------------------------------------------------------------
                                                                                   

consensus_10170#0      TGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATAT 660
consensus_10170#1      ------------------------------------------------------------
                                                                                   

consensus_10170#0      TAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAA 720
consensus_10170#1      ------------------------------------------------------------
                                                                                   

consensus_10170#0      AGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACA 780
consensus_10170#1      ------------------------------------------------------------
                                                                                   

consensus_10170#0      CTGATAAGGACCAGTGACACTATTTTCTTTATTTTCTCATAATGGCTTCTTTTCTTTAAA 840
consensus_10170#1      ------------------------------------------------------------
                                                                                   

consensus_10170#0      NTATGNCCGATATGTCAGTAAGTCATTTCAATCAAGTGACTGGTCATATAANCTAATT 898
consensus_10170#1      ----------------------------------------------------------