These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 578 fasta sequence [CTCCGGTACCCTGGGCATGGGTGGAAAATCAGGATAAGCTTCGGGTTTATTTTCAGGAATGAGTGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACCAGAAGACGGTCG-TATTTCCACCA-GCCAGGGTACCGGGC] [+] EMBL CD168293 [CTCCGGTACCCTGGGCATGGGTGGAAAATCAGGATAAGCTTCGGGTTTATTTTCAGGAATGAGTGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC ] [-] EMBL CD168106 [ GCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACC ] [-] EMBL CD168028 [ CGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCGCTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACCAGAAGACGGTCG TATTTCCACCATGCCAGGGTACCGGGC] [-] EMBL CD168042 [ CGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAACTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCGCTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGGCATGAAGTATCACAAAATTCATCACCTACGGCATAACCAGAAGACGGTCGTTATTTCCc ] [-] EMBL CD067044 [ TGAAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGTCGATGTTAACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACNTACGGCATAACC ] [-] EMBL CD167954 [ AAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACCAGAAGACGGTCC GATTTCCACCA GCCAGGGTACCGGG ] consensusID : consensus_10178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 515 fasta sequence [CGACCTCCGGTACCCTGGCTGGTGGAAATCACGAATGAGCGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC-GGACT-AGA-CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC] [+] EMBL CD167952 [CGACCTCCGGTACCCTGGCTGGTGGAAATCACGAATGAGCGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC GGACT AGA CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC] [+] EMBL CD167935 [ GCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC GGACT AGA CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC] [+] EMBL CD167916 [ GCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC GGACT AGA CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC] [+] EMBL CD066980 [ GCGTCCGGGATTTTGTGTTCACCTGACGCCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC GGACT AGA CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTAC ] [-] EMBL CD168038 [ GATATTGCGAGCATGGCCTAAAATACGTTTAGAATGATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAAATCGACCACTTGTAATCTGATTATCAGGATAGCGGCCAAATCCGCCCGTTGTAGCTGT ] [-] EMBL CD152110 [ CATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCTGGACTCAGAGCCAGGATGCAAGCAAATGGA ] consensusID : consensus_10178#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 403 fasta sequence [AACATACTACTCATCAGACCAGATACANNCATAGTTTGCATAAACATAGTTAAACATATCCGATTTAATACAATACGTGGACTAGCACAGGTTTGTAGACAAGGGCATAAACAAGAAGTATCATCAACTTTTGCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAACGAATTTTCTAATGCAATATCATTAGATGAACGTGGAGGTGTTAGACAAGGATAAGCTTCAGGTTTATTTTCAGGAATGAGTGAAGC-GTCCGGGAT-TTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGAT] [-] EMBL CD195963 [AACATACTACTCATCAGACCAGATACANNCATAGTTTGCATAAACATAGTTAAACATATCCGATTTAATACAATACGTGGACTAGCACAGGTTTGTAGACAAGGGCATAAACAAGAAGTATCATCAACTTTTGCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAACGAATTTTCTAATGCAATATCATTAGATGAACGTGGAGGTGTTAGACAAGGATAAGCTTCAGGTTTATTTTCAGGAATGAGTGAAGC GTCCGGGAT TTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGAT] [-] EMBL CD184362 [ TGTAGACAAGGGCATAAACAAGAAGTATCATCAACTTTTGCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAACGAATTTTCTAATGCAATATCATTAGATGAACGTGCAGGTGTTAGATAAGGATATGCTTCAGGTTTATTTTCAGGAATGAGTGAAGCGGTCCGGGATATTTGTGTTCACCct ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10178#0 CTCCGGTACCCTGGGCATGGGTGGAAAATCAGGATAAGCTTCGGGTTTATTTTCAGGAAT 60 consensus_10178#1 ------------------------CGACCTCCGGTACCCTGGCTGGTGGAAATCACGAAT 36 consensus_10178#2 ------------------------------------------------------------ consensus_10178#0 GAGTGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACC 120 consensus_10178#1 GAGCGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACC 96 consensus_10178#2 ---------------------------------------AACATACTACTCATCAGACCA 21 * ** * ** **** * consensus_10178#0 ATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGT 180 consensus_10178#1 ATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGT 156 consensus_10178#2 GATACANNCATAG------TTTGCATAAACATAGTTAAACATATCCGATTTAAT-ACAAT 74 ** *** ** ** * * ** ** *** * *** * *** * consensus_10178#0 ACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTT 240 consensus_10178#1 ACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTT 216 consensus_10178#2 ACGTGGA-CTAGCACAGGTTTGTAGACAAGGGCATAAACAAGA-AGTATCATCAACTTTT 132 *** * * *** * * ** * ** * * * * * ** *** consensus_10178#0 AGAATAATA--TGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATAT 298 consensus_10178#1 AGAATAATA--TGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATAT 274 consensus_10178#2 GCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAACGAATTTTCTAAT 192 * * ** * * * * * ** **** * * * ** *** * ** consensus_10178#0 GGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCT 358 consensus_10178#1 GGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCT 334 consensus_10178#2 GCAAT---ATCATT----AGATGAACGTGGAGGTGTTAGACAAGGATAAGCTTCAGGTTT 245 * ** * ** * * *** * * * * *** * * * * consensus_10178#0 GTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTT 418 consensus_10178#1 GTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTT 394 consensus_10178#2 ATTTTCAGGAATGAGTGAAGC----GTCCGGGATT-TTGTGTTCACCTGACAC------- 293 * ** * * ** ** *** ** ** *** * * * * consensus_10178#0 GCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACT 478 consensus_10178#1 GCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACT 454 consensus_10178#2 -CACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAG---ATGGTCTTTCAGTTAACT 349 ******** ***** * ** ** * *** * * * * ** *** consensus_10178#0 ACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAA 538 consensus_10178#1 ACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAA 514 consensus_10178#2 G-------GTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGA 402 ** * ** ** ** * ** * ** *** * * * consensus_10178#0 CCAGAAGACGGTCGTATTTCCACCAGCCAGGGTACCGGGC 578 consensus_10178#1 C--------------------------------------- 515 consensus_10178#2 T--------------------------------------- 403 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||