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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 943 fasta sequence
[CGGCCAANAATTTTGCACGAGGTTCACATTTCGTAACTGAACTCATTCTATCATGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGG-AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA-GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG-AACAAATATGTCAGTCTATTGCATCAG-AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTG-AAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGTGTTTCTTAATAATAAAAATTGCGTTGGATTNTTTCTCTACTTTTGATGTACTTTTAAAATGTTACCTAATGTTAGTCTATAAATGGTTGGCTTATAGATCAGTTTCTTC-ACTTTAT-AACATTT-ANAATT-ATT-AACAT-AGTATATGGCCTTAATCATTTACATATCATATTGTTATGTTTTACTGAAT]
[+] EMBL CD080846 [CGGCCAANAATTTTGCACGAGGTTCACATTTCGTAACTGAACTCATTCTATCATGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCANACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTG AAATTATATAACT ATCGTTNTTTTTGTCTT CTATAA CGNNGTTCTAAAT ATAAAAt ]
[+] EMBL AA559707 [ ATCATGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCANCAATAGCTGAATGTGATACATGTTTGGCA G ]
[+] EMBL AI977047 [ TTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTTTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGAT ]
[+] EMBL BF936902 [ GTTTGTTGTACAGAGCGTAATTTGTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTG AAAATATA ]
[+] EMBL AA559389 [ TTTGTTGTACAGAGCGTAATTTGTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCANCAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATNGCATCAGAAAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTNCCTTAATAAAACTTTGGATGTNCTGGCTAAAGCAGTGAATCCTGATTACNTTTGCAAGGCATTACAAGCTTGTGCAAATGATNCAAGATCTNCGTCCACTCGAAACTCCGGA ]
[+] EMBL AA559791 [ TTCAACGGNAATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCANCAATAGCTGAATGTGATACATGTTTGGCAGGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAGAAACAAATATGTCAGTCTATNGCATCAGAAAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTA ]
[+] EMBL CD077587 [ gaggAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGC AGGCATTACAAGCTTGTGCAAATGATACAAGATCTT ]
[+] EMBL CD080166 [ AACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTG AAAANATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGTGTTTCTTAATAATAAAAATTGCGTTGGATTNTTTCTCTACTTTTGATGTACTTTTAAAATGTTACCTAATGTTAGTCTATAAATGGTTGGCTTATAGATCAGTTTCTTC ACTTTAT AACATTT ANAATT ATT AACAT AGTATATG ]
[+] EMBL SM6601 [ AAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATAC AGATCTT ]
[-] EMBL CD075786 [ TTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGTGTTTCTTAATAATAAAAATTGCGTTGTATTTTTTCTCTACTTTTGATGTACTTTTAAAATGTTACCTAATGTTAGTCTATAAATGTTTGGCTTATAGATCAGTTTCTTCAACTTTATAAACATTTAAAAATTAATTAAACATAAGTATAATGCCTTAATCATTTACATATCATATTGTTATGTTTTACTGAAT]
consensusID : consensus_10180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 914 fasta sequence
[GTACGAGGAACATTTTACATTTCGTAACTGAACTCATTCTATCTTGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGGAATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCAGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAGAACAAATATGTCAGTCTATTGCATCAGAAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGNNGTTCTTATAATAAAAATGCNNGTGATTTTTCCTACTTTTGATGACTNTTAAATGTACCCTATGTAGTCTATAATGGTGGGCTATGATCAGTTCTTCACTTATAACATTAAAAATATNANCATAGNTANGCCTATCATTACTATCAAATGNATGGTTACTGANAAA]
[+] EMBL CD082170 [GTACGAGGAACATTTTACATTTCGTAACTGAACTCATTCTATCTTGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGGAATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCAGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAGAACAAATATGTCAGTCTATTGCATCAGAAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTC AAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCANACATGTTATGCACTTTGCACTTTCCTAAAACTNTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAA TATATAACTAATCGNTNNTTNTGTCTTCCTATNACCGNNGTTCTTATAATAAAAATGCNNGTGATTTTTCCTACTTTTGATGACTNTTAAATGTACCCTATGTAGTCTATAATGGTGGGCTATGATCAGTTCTTCACTTATAACATTAAAAATATNANCATAGNTANGCCTATCATTACTATCAAATGNATGGTTACTGANAAA]
[+] EMBL CD185894 [ CTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAGAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAATTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTCGTCTTCCTATAACCG ]
[-] EMBL AI021775 [ AAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATA TTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAA ]
[-] EMBL AI021774 [ GAAATGAAATCTTCAGTGAAAGTGATATG TTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10180#0 CGGCCAANAATTTTGCACGAGG-----TTCACATTTCGTAACTGAACTCATTCTATCATG 55
consensus_10180#1 --------------GTACGAGGAACATTTTACATTTCGTAACTGAACTCATTCTATCTTG 46
* ****** ** *************************** **
consensus_10180#0 ATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGGAATCA 115
consensus_10180#1 ATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGGAATCA 106
************************************************************
consensus_10180#0 AACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGT 175
consensus_10180#1 AACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGT 166
************************************************************
consensus_10180#0 GATACATGTTTGGCAGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTA 235
consensus_10180#1 GATACATGTTTGGCAGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTA 226
************************************************************
consensus_10180#0 AAGATTTATATGATTGCAGCAGAACAAATATGTCAGTCTATTGCATCAGAAAGTCTAAAA 295
consensus_10180#1 AAGATTTATATGATTGCAGCAGAACAAATATGTCAGTCTATTGCATCAGAAAGTCTAAAA 286
************************************************************
consensus_10180#0 AACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAA 355
consensus_10180#1 AACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAA 346
************************************************************
consensus_10180#0 GCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCT 415
consensus_10180#1 GCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCT 406
************************************************************
consensus_10180#0 TCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAAT 475
consensus_10180#1 TCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAAT 466
************************************************************
consensus_10180#0 AGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAA 535
consensus_10180#1 AGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAA 526
************************************************************
consensus_10180#0 GTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATAT 595
consensus_10180#1 GTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATAT 586
************************************************************
consensus_10180#0 ATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTT 655
consensus_10180#1 ATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTT 646
************************************************************
consensus_10180#0 TGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGA 715
consensus_10180#1 TGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGA 706
************************************************************
consensus_10180#0 AA-TTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGTGTTTCTTAATAATAAAAA 774
consensus_10180#1 AAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGNNGTTCTTA-TAATAAAAA 765
** ************************************** ****** *********
consensus_10180#0 TTGCGTTGGATTNTTTCTCTACTTTTGATGTACTTTTAAAATGTTACCTAATGTTAGTCT 834
consensus_10180#1 T-GCNNGTGATTTTTCC--TACTTTTGATG-ACTNTTAAA-TGT-ACCCTATGT-AGTCT 818
* ** **** ** * *********** *** ***** *** *** **** *****
consensus_10180#0 ATAAATGGTTGGCTTATAGATCAGTTTCTTCACTTTATAACATTTANAATTATTAACATA 894
consensus_10180#1 ATAA-TGGTGGGCT-AT-GATCAGTT-CTTCACTT-ATAACATTAAAAAT-ATNANCATA 872
**** **** **** ** ******** ******** ******** * *** ** * ****
consensus_10180#0 GTATATGGCCTTAATCATTTACATATCATATTGTTATGTTTTACTGAAT 943
consensus_10180#1 GN-TANGCCTATCATTACTATCAAAT-GNATGGTTAC----TGANAAA- 914
* ** * * * ** * * ** ** ** **** * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||