These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1640 fasta sequence [ACGGCTGGGTTACTTTGCCAATGTCGGTGACCTTG-TCATTCCTAGCTTGCTGTGCATTCCCTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGACTTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAATGATGCGCCGCGAGCGCTCTCGACTTGGTCAACCACTCTGGTTGGAAGAAGAATTTCTGGAAATTGTACCGTCACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTTTAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTAAACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTATTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGACATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGATGAACATTATCAAGATCGATTAACTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATCATATTGCTTTTAGACGTGTTTCCATCATTATATNTTTTAATAAAACTGATATACTT-AAAGAAAAGTTGAACTCACGTACATCAAATATTCGTGATGAGTTTCCTAATTACCCTGTGAAAATGGATCCATTCCGTCTGCAAGATGTTCAAACA-TTTATGGTTGAAGTATTTGCCTCTCTAGTCAATCACAATTTTCCA-CCAGATACTCAAGCTCGTTCAAGTCTTTCACACTCATCATTCAATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACT-AACGTAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTGTTTGCGCCCTTGGATCTCACGTGAACACAATATCTATACCTTCCGAAAATTAATTAAAAGTCTTACTCTTCGTGCTAACAATGTCTGTGCCAAATTCAAATTACCCCCAAAATCATCCGTACTACTAATAAAAAATGCACCCTTTTTATTTCATATTTTCTTATCCAATCATTGTCTTTCACGCTACTTAATTCTTCATTACATAAATATATGTGCTTTGTA] [+] EMBL CD181001 [ACGGCTGGGTTACTTTGCCAATGTCGGTGACCTTG TCATTCCTAGCTTGCTGTGCATTCCCTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAAT ] [+] EMBL CD191515 [ GGTTACTTTGCCAATGTCGGTGACCTTGATCATTCCTAGCTTGCTGTGCATTCCCTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAATTTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGACTTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAATGATGCGCCGCGAGCGCTCTCGACTTGGTCAACCA ] [+] EMBL AI975965 [ CAATGTCGGTGACCTTG TCATTCCTAGCTTGCTGTGCATTCCCTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGACTTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAATGATGCGCCGCGAGCGCTCTCGACTTGGTCAACCACTCTGGTTGGAAGAAGAATTTCTGGAAATTGTACCGTCACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAAATTTAGTGAG ] [+] EMBL CD180718 [ AACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGGTGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGACTTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAATGATGCGCCGCGAGCGCTCTCGACTTG ] [+] EMBL AI975967 [ tGCTAGTAGAGAAATCGAGGCACATTTTAGAGAAACCCGGGTGATGCGCCGTGAGCGCTCTCGACTTGGTCAACCACTTTGGGTGGAAGAAGAATT ] [+] EMBL CD198117 [ GGTCAACCACTCTGGTTGGAAGAAGAACTTCTGGAAATTGTACCGTCACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTTTAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTAAACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTATTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGACATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGATGAACATTATCAAGATCGATTAACTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATCATATTGCTTTTAGACGTGTTTCCATCATTATATNTTTTAATAAAACTGATATACTT AAAGAAAAGTTGAACTCACGTACATCAAATATT ] [+] EMBL CD198119 [ GGTCAACCACTCTGGTTGGAAGAAGAATTTCTGGAAATTGTACCGTTACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTTTAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTAAACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTATTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGACATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGACGAACATTATCAAGATCGATTAACTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATCATATTGCTNTTAGACGTGTNTCCATCATTATATTTTTTAATAAAACTGATAT ] [+] EMBL CD198132 [ GGTCAACCACTCTGGTTGGAAGAAGAATTTCTGGAAATTGTACCGTCACTGAATGCAATACGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTTTAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTAAACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTATTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGACATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGATGAACATTATCAAGATCGATTAACTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATCATATTGCTTTTAGACGTGTNTCCATCATTATATN ] [-] EMBL CD198188 [ CTATGG TGTTTNTGAAGNACTTATCAATCATATTGCTNTTAGACGTGTTTCCATCATTATATTTTTTAATANAACTGATATACTT AAAGAAAAGTTGAACTCACGTACATCAAATATTCGTGATGAGTTTCCTAATTACCCTGTGAAAATGGATCCATTCCGTCTGCAAGATGTTCAAACA TTTATGGTTGAAGTATTTGCCTCTCTAGTCAATCACAATTTTCCA CCAGATACTCAAGCTCGTTCAAGTCTTTCACACTCATCATTCAATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACT AACGTACCATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATT ] [-] EMBL CD195847 [ CTTNAANGAAAAGTTGANCTCACGTACATCAAATATCNGTGATGAGTTT CTAATTACCCTGTG AAATGGATCCATTCCGTCTGCAAGATG TC AACATTTTATGG TGAAGTA TTGCCTCTCTAGTCAATCACAATTTTCCACCCAGTTACTCAAGCTCGTTCAAGTCTTCNACACTCATCATTCAATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACT AACGTAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTG ] [-] EMBL CD178177 [ TTGAACTCACGTACATCAAATATTCGTGATGAGTTTCCTAATTACCCTGTGAAAATGGATCCATTCCGTCTGCAAGATGTTCAAACA TTTATGGTTGAAGTATTTGCCTCTCTAGTCAATCACAATTTTCCA CCAGATACTCAAGCTCGTTCAAGTCTTTCACACTCATCATTCAATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACT AACGTAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTGTTTGCGCCCTTGGATCTCACGTGAACACA ] [-] EMBL CD195982 [ TCATTCAATGATACTGCTAAATGTTCATCTCTGCATAGACAAAACTCTGTACCTATATGCACT AACGTAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTG ] [-] EMBL AI395287 [ ATGGCCAAAAATCTGTACGTATATCC CTGTAGGTAACATTTACAGCCCCTGTATGAAAACGTATGGTCTATCGTCATTTTACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAGTAATTTACGTCGTATCATGATGAGCTAAGTACATATATATAAAGTTCATATATTTGGAGTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTAGTATGTTGTTTGCGCCCTTGGATCTCA GTGAACACAATATCTATACCTTCCGAAAATTAATTAAAAGTCTTACTCTTCGTGCTAACAATGTCTGTGCCAAATTCAAATTACCCCCAAAATCATCCGTACTACTAATAAAAAATGCACCCTTTTTATTTCATATTTTCTTATCCAATCATTGTCTTTCACGCTACTTAATTCTTCATTACATAAATATATGTGCTTTGTA] consensusID : consensus_10195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [TTCGTCACGTGGCGAAATATCGAAACGGTATTCAATGCTATGCATGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTNTGGTTTATTATGTTGCTTGCGCCCTTGGATCTCAGTGAAC] [+] EMBL CD078067 [TTCGTCACGTGGCGAAATATCGAAACGGTATTCAATGCTATGCATGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTNTGGTTTATTATGTTGCTTGCGCCCTTGGATCTCAGTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10195#0 ACGGCTGGGTTACTTTGCCAATGTCGGTGACCTTGTCATTCCTAGCTTGCTGTGCATTCC 60 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 CTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAA 120 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTAT 180 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAA 240 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 AGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACA 300 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 AAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGAC 360 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAA 420 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TGATGCGCCGCGAGCGCTCTCGACTTGGTCAACCACTCTGGTTGGAAGAAGAATTTCTGG 480 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 AAATTGTACCGTCACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACC 540 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 AACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTT 600 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTA 660 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 AACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTA 720 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGA 780 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 CATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGATGAACATTATCAAGATCGATTAA 840 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 CTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATC 900 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 ATATTGCTTTTAGACGTGTTTCCATCATTATATNTTTTAATAAAACTGATATACTTAAAG 960 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 AAAAGTTGAACTCACGTACATCAAATATTCGTGATGAGTTTCCTAATTACCCTGTGAAAA 1020 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TGGATCCATTCCGTCTGCAAGATGTTCAAACATTTATGGTTGAAGTATTTGCCTCTCTAG 1080 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TCAATCACAATTTTCCACCAGATACTCAAGCTCGTTCAAGTCTTTCACACTCATCATTCA 1140 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 ATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACTAACG 1200 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCG 1260 consensus_10195#1 -----------------------------------------------------TTCGTCA 7 *** consensus_10195#0 ATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATT 1320 consensus_10195#1 CGTGGCGAAATATCGAAACGGTATTCAATGCTATGCATGATACAGTGTTGCAAAATAATT 67 ********************************** ********************** consensus_10195#0 TACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAA 1380 consensus_10195#1 TACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAA 127 ************************************************************ consensus_10195#0 TTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTGTTTGCGCCCTTGGATCTCACGT 1440 consensus_10195#1 TTGTTTACTTCCATTTTCTGCTNTGGTTTATTATGTTGCTTGCGCCCTTGGATCTCA-GT 186 ********************** *************** ****************** ** consensus_10195#0 GAACACAATATCTATACCTTCCGAAAATTAATTAAAAGTCTTACTCTTCGTGCTAACAAT 1500 consensus_10195#1 GAAC-------------------------------------------------------- 190 **** consensus_10195#0 GTCTGTGCCAAATTCAAATTACCCCCAAAATCATCCGTACTACTAATAAAAAATGCACCC 1560 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 TTTTTATTTCATATTTTCTTATCCAATCATTGTCTTTCACGCTACTTAATTCTTCATTAC 1620 consensus_10195#1 ------------------------------------------------------------ consensus_10195#0 ATAAATATATGTGCTTTGTA 1640 consensus_10195#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||