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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1527 fasta sequence
[TNTAGTATGATTGGTTACAAAAAGACGATAGATATAGAGACCGAACAAACGGAAAAGAGTTGACCGGNTAAAGAATGAAGAAACTCGAAGTAAATATGACTTGGAGGTCGGAAGTGACAGAAAGAGTAAAATGTCGATAACCATGCATACATACATAAACAGACATATTTTGTTAAGAACTGCAAGAGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCC-AAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAGATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGTTGCATGGCTAACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGAACCAACTGAGAAGCGTGCGCTTTTGGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCAGCGAAAGCAGAAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCATCTCCAACATTATCTAGACCTTGTGGGACAGAAGCAACAATTGGTCGTGAGTGTGGAGCTGGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCACCACCAAGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGACATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGTTG-TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTGCTCCTTGAATTCCTG--GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTTGGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAATGTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAGAAGAAGTTCAACGCCTGGAGTAGCGTTTGGTGCTAAATAAAATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGACCTAGTTGACGATGCCTCTCGACGGTGGA]
[-] EMBL CD183789 [TNTAGTATGATTGGTTACAAAAAGACGATAGATATAGAGACCGAACAAACGGAAAAGAGTTGACCGGNTAAAGAATGAAGAAACTCGAAGTAAATATGACTTGGAGGTCGGAAGTGACAGAAAGAGTAAAATGTCGATAACCATGCATACATACATAAACAGACATATTTTGTTAAGAACTGCAAGAGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCC AAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAGATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAAC ]
[-] EMBL CD145089 [ cnAACGGAAAAGAGTTGACCGGTTAAAGAATGAAGAAACTCGAAGTAAATATGACTTGGAGGTCGGAAGTGACAGAAAGAGTAAAATGTCGATAACCATGCATACATACATAAACAGACATATTTTGTTAAGAACTGCAAGAGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCCAAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAAATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACg ]
[+] EMBL CD193864 [ GTGGAAAATGTTGGTCAAGGTGCC AAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAGATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGGCAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTT ]
[-] EMBL CD188043 [ ACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGTTGCATGGCTAACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGGACCAACTGAGAAGCGTGCGCTTTTGGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCAGCGAAAGCAGAAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCATCTCCAAC ]
[-] EMBL CD155446 [ AACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGTTGCATGGCTAACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGAACCAACTGAGAAGCGTGCGCTTTTGGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCAGCGAAAGCAGAAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCATCTCCAACATTATCTAGACCTTGTGGGACAGAAGCAACAATTGGTCGTGAGTGTGGAGCTGGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCACCACCAAGTGAAGTGCCAATACGC ]
[+] EMBL CD125119 [ GTTCTGTTGCATGGCTAACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGAACCAACTGAGAAGCGTGCGCTTTTGGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCAGCAAAAGCAGTAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCATCTCCAACATTATCTAGACCTTGTGGGACAGAAGCAACAATTGGTCGTGAGTGTGGAGCTGGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCAACACCAAGTGAAGTGCCAGTACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACT ]
[-] EMBL CD067462 [ AGCAACAATTGGTCGTGAGTGTGGAGCTGGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCACCACCAAGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGACATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGTTG TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTGCTCCTTGAATTCCTGATTCCACTTG ]
[+] EMBL CD189715 [ TTGAAGACGAAGCAACGCCATTACCACCACCAAGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGACATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGTTG TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTGCTCCTTGAATTCCTG GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATC ]
[-] EMBL CD123097 [ ACGAAGCAACACCATTACCACCACCAAGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGACATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGTTG TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTGCTCCTTGAATTCCTG GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGA ]
[+] EMBL CD159409 [ CATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTTGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAGAGCTCCGCCATCTGGTTG TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAACTCCATTTGATGTGCTCCTTGAATTCCTG GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTTGGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAATGTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAAANGAAGTTCAACGCCTGGAGTAGCGTTTGGTGCTAAAT ANATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGACCTAGTTGACGATGCCTCTCGAC ]
[-] EMBL CD170682 [ GGTTGTTTTTTTAGCAATCATATCTTTGGAATAATTCTTTGNTTTTTTAGCTCCATTTGATGTGCTCCTTGAACTCCTG GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTTGGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAATGTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAGAAGAAGTTCAACGCCTGGAGTAGCGTTTGGTGCTAAATAAAATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGACCTAGTTGACGATGCCTCTCGACGG ]
[+] EMBL CD189877 [ TTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTTGGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAATGTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAGAAGAAGTTCAACGCCTGGAGTAGCGTTTGGTGCTAAATAAAATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGACCTAGTTGACGATGCCTCTCGACGGTGGA]
consensusID : consensus_10197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 357 fasta sequence
[ATTCTGCTTTAGGGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAAATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCCACCTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGT]
[+] EMBL CD141654 [ATTCTGCTTTAGGGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAAATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCCACCTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGT]
[-] EMBL CD202717 [ aAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10197#0 TNTAGTATGATTGGTTACAAAAAGACGATAGATATAGAGACCGAACAAACGGAAAAGAGT 60
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 TGACCGGNTAAAGAATGAAGAAACTCGAAGTAAATATGACTTGGAGGTCGGAAGTGACAG 120
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 AAAGAGTAAAATGTCGATAACCATGCATACATACATAAACAGACATATTTTGTTAAGAAC 180
consensus_10197#1 ----------------------------------------------ATTCTGCT------ 8
*** ** *
consensus_10197#0 TGCAAGAGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTC 240
consensus_10197#1 --TTAGGGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTC 66
** *****************************************************
consensus_10197#0 AAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATA 300
consensus_10197#1 AAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATA 126
************************************************************
consensus_10197#0 GAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAGATAAGTTGATCACAATAAT 360
consensus_10197#1 GAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAAATAAGTTGATCACAATAAT 186
**************************************** *******************
consensus_10197#0 GCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAA 420
consensus_10197#1 GCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAA 246
************************************************************
consensus_10197#0 TAACTCTATAAATACCA--CTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAG 478
consensus_10197#1 TAACTCTATAAATACCCACCTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAG 306
**************** *****************************************
consensus_10197#0 AAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGTTGCATGGCT 538
consensus_10197#1 AAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGT--------- 357
***************************************************
consensus_10197#0 AACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGAACCAACTGAGAAGCGTGCGCTTTT 598
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 GGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCA 658
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 GCGAAAGCAGAAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCA 718
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 TCTCCAACATTATCTAGACCTTGTGGGACAGAAGCAACAATTGGTCGTGAGTGTGGAGCT 778
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 GGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCACCACCA 838
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 AGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACA 898
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 TGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGAC 958
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 ATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAA 1018
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 ATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTA 1078
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 ATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGT 1138
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 TGTTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTG 1198
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 CTCCTTGAATTCCTGGCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAAT 1258
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 ATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTT 1318
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 GGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAAT 1378
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 GTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAGAAGAAGTTCAACGCCTGGA 1438
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 GTAGCGTTTGGTGCTAAATAAAATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGA 1498
consensus_10197#1 ------------------------------------------------------------
consensus_10197#0 CCTAGTTGACGATGCCTCTCGACGGTGGA 1527
consensus_10197#1 -----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||