These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 936 fasta sequence [CCGGCACACCTTGCACAATGATATTTCGTCCACGGAAGAACGCCTCACGAGATTCCTTAGGGATGTTCCGGATGAGATTTCGTTCAGAATACGGTATGTCGGGCAGTATTCTTACGTTCCCATCGGACCTCAGTAAGTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAAGTGTAACACGAAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCCGTGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCCAGCCTCTTGATTAATTCTCCCCAGAGCATCCTGTCGTTTTTGTCCTGCAAACTGAGAGGAAGGTC-GGGGTTGTCAATAAGGTTCATGATTATGACAGAGTCGTTACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCATCAATTGATTTCCGCACGATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAACACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTTCTTGTTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGCTATCATTTACCAAATTCTTAGACAACTTATCTCTCAGACCTGTCAGTAAAGTAATGATAGGACCCAACATAACTACCGTATCGGTAGGCAGGTAACACATACCTACCTTGGTTT] [-] EMBL CD141954 [CCGGCACACCTTGCACAATGATATTTCGTCCACGGAAGAACGCCTCACGAGATTCCTTAGGGATGTTCCGGATGAGATTTCGTTCAGAATACGGTATGTCGGGCAGTATTCTTACGTTCCCATCGGACCTCAGTAAGTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAAGTGTAACACGAAGCAGCCTCGGGTGGTTTAGGTGGTTAG ] [+] EMBL CD088487 [ AGTAAGTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAAGTGTAACACGTAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCCGTGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCCAGCCTCTTGATTAATTCTCCCCAGAGCATCCTGTCGTTTTTGTCCTGCAAACTGAGAGGAAGGTC GGGGTTGTCAATAAGGTTCATGATTATGACAGAGTCGTTACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCATCAATTGATTTACGCACGATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGNGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAACACATCATCACTCGTGCTGTTAACAGCACCGTCGATATCCGACCTGCCAGT ] [+] EMBL CD088522 [ GTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAAGTGTAACACGAAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCCGTGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCCAGCCTCTTGATTAATTCTCCCCAGAGCATCCTGTCGTTTTTGTCCTGCAAACTGAGAGGAAGGTCGGGGGTTGTCAATAAGGTTCATGATTATGACAGAGTCGTTACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCATCAATTGATTTACGCACGATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGNGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTC ACACATCATCACTCGTGCTGT ] [-] EMBL CD159432 [ CTGGCTAGCAGGACGTCCTTTACGTCGGAGGCATTCTTAAGTGTAACACGGAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCCGCGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCAAGCCTCTTGTTTAATTCTCCCCAGAGCATCCTATCATTTTTATCCTGCAAACTGAGAGGAAGGTC GGGGCTGTCAATAAGGTTCATGATTATGACAGAGTCGTCACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGCTTGGTATCTTGTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGAGCTCAGTGATGACCGGGCGGACA ] [-] EMBL CD127974 [ GGTC GGGGTTGTCAATAAGGTTCATGATTATGACAGAGTAGTCAAGAACCGCAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTGGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAAAATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAACACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTTCTTATTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGATATCATTTACCGAATTCTTAGACAACTTATCTCTCAGACCTGTCAGTAAAGTAATGATAGGACCCAACATAACTACCGTATCGGTAGGCAGGTAACACATACCTACCTTGGTTT] [-] EMBL CD182968 [ gTGTTTGG GAGGAGGCGCGTNTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAAAATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAACACATCAT ] [+] EMBL CD122010 [ CCGGGCGGACAGTCTTGGGGGTAGACTGTGCGGCCAAAGCATCAATTGATTTCCGCACGGTACTTGGGACGTTCAGTTTCGGCGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCAACCACCTACAGGATTTTTGGGAACCACTGTCTCATTCAAGGACTGTTCCCTGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAAGATGGTGCTGAGTTTCAGCACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTTCTTGTTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGCTATCATTTACCAAATTCTTAGACAACTTATCTCTCAG ] [-] EMBL CD121939 [ GGATTTTTGGGAACCACTGTCTCATTCAAGGACTGTTCCCTGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAAGATGGTGCTGAGTTTCAGCACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTTCTTGTTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGCTATCATTTACCAATTTCTTAGACAACTTATCTCTCAGA ] consensusID : consensus_10202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [TGCGAAATAAAGACATCCCAGTTATTGCTAACTCTGGGTCCGTAAACTGAGACGTNATCCAAGTTTCGGATATTCCTATCAGATGGGCATCATNAGCGTTGCTAAGTTCACGTAGCTCATCCATTTTGTTTGGCAAGCTCGCGGCGTTCGTGTATAGGCAGGAAGGTCGGGGTTGTCAATAAGGTTCATGATTATGACAGAGTAGTCAAGAACCGCAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTGGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAAAATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTA] [-] EMBL CD198582 [TGCGAAATAAAGACATCCCAGTTATTGCTAACTCTGGGTCCGTAAACTGAGACGTNATCCAAGTTTCGGATATTCCTATCAGATGGGCATCATNAGCGTTGCTAAGTTCACGTAGCTCATCCATTTTGTTTGGCAAGCTCGCGGCGTTCGTGTATAGGCAGGAAGGTCGGGGTTGTCAATAAGGTTCATGATTATGACAGAGTAGTCAAGAACCGCAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTGGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAAAATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTA] consensusID : consensus_10202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 341 fasta sequence [GCACAAACGAAAGCTGGAGCTGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACATCGTATAGGTAGGCTACCTGTCCACTCACACACGGCTCATATAGACAAACAAGAAGAGGCTCACGCGTTCCAAATTGAAAGCATAAACTGCCTATACACGAACGCCGCGAGCTTGCCAAACAAAATGGATGAGCTACGTGAACTTAGCAACGCTAATGATGCCCATCTGATAGGTATATCCGAAACTTGGATAACATCTCAGTTTACGGACCAGGAGCTAGCAATAACTGGAATGTCTTGTTTCCN] [-] EMBL CD119539 [GCACAAACGAAAGCTGGAGCCGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACATCGTATAGGTAGGCTACCTGTCCACTCACACACGGCTCATAGAGgc ] [-] EMBL CD119293 [GCACAAACGAAAGCTGGAGCTGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACATCGTATAGGTAGGCTACCTGTCCACTCACACA ] [+] EMBL CD152862 [ ACAAACGAAAGCTGGAGCTGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACATCGTATAGGTAGGCTACCTGTCCACTCACACACGGCTCATATAGACAAACAAGAAGAGGCTCACGCGTTCCAAATTGAAAGCATAAACTGCCTATACACGAACGCCGCGAGCTTGCCAAACAAAATGGATGAGCTACGTGAACTTAGCAACGCTAATGATGCCCATCTG ] [+] EMBL CD152721 [ ACAAACGAAAGCTGGAGCTGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGT ] [+] EMBL CD088082 [ TACCAACTCGGTAAACATTGTATAGGTAGGCTACCTGTCCACTCACGCACGGCTCATATAGACAAACAGGAAGAAGCTCACGCGTTCCAAATTGAAAGCATAAACTGCCTATACACGAAC CCGCGAGCTTGCCAAACAAAATGGATGAGCTACGTGAACTTAGCAACGCTAATGATGCCCATCTGATAGGTATATCCGAAACTTGGATAACATCTCAGTTTACGGACCAGGAGCTAGCAATAACTGGAATGTCTTGTTTCCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10202#0 CCGGCACACCTTGCACAATGATATTTCGTCCACGGAAGAACGCCTCACGAGATTCCTTAG 60 consensus_10202#1 ------------------------------------------------------------ consensus_10202#2 ------------------------------------------------------------ consensus_10202#0 GGATGTTCCGGATGAGATTTCGTTCAGAATACGGTATGTCGGGCAGTATTCTTACGTTCC 120 consensus_10202#1 ------------------------------------------------------------ consensus_10202#2 ------------------------------------------------------------ consensus_10202#0 CATCGGACCTCAGTAAGTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAA 180 consensus_10202#1 --------------------------TGCGAAATAAA---GACATCCCAGTTATTGCTAA 31 consensus_10202#2 -------------------------GCACAAACGAAAGCTGGAGCTGACAATTCCACTCG 35 * * consensus_10202#0 GTGTAACACGAAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCC 240 consensus_10202#1 CTCTGGGTCC--GTAAACTGAGACGTNATCCAAGTTTCGGATATTCCTATCAGATGGGCA 89 consensus_10202#2 TGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACA 95 * * * * * * consensus_10202#0 GTGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCCAGCCTCTTGATTAATTCTCCCCAGA 300 consensus_10202#1 TCATNAGCGTT----GCTAAGTTC-ACGTAGCTCATCCATTTTGTTTGGC--------AA 136 consensus_10202#2 TCGTATAGGTA---GGCTACCTGTCCACTCACACACGGCTCATA-TAGAC--------AA 143 * ** *** * * * * * * consensus_10202#0 GCATCCTGTCGTTTTTGTCCTGCAAACTGAGAGGAAGGTCGGGGTTGTCAATAAGGTTCA 360 consensus_10202#1 GC-TCGCGGCGTTCGTGT-------ATAGGCAGGAAGGTCGGGGTTGTCAATAAGGTTCA 188 consensus_10202#2 ACAAGAAGAGGCTCACGCGTTCCAAATTGAAAGCATAAACTGC-CTATACACGAACGCCG 202 * * * * * * * ** * * * * * * * * consensus_10202#0 TGATTATGACAGA-GTCGTTACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTA 419 consensus_10202#1 TGATTATGACAGA-GTAGTCAAGAACCGCAATTGATTTCCCAGGTTTTCCAGGGCGTCTA 247 consensus_10202#2 CGAGCTTGCCAAACAAAATGGATGAGCTACGTGAACTTAGCAACGCTAATGATGCCCATC 262 ** ** ** * * * * * * ** ** * ** * consensus_10202#0 GGTTTGGTATCTT-GTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGGGCTCAGTGAT 478 consensus_10202#1 GGTTTGGTATCTT-GTTGTTTGGATGTGGAGGCGCGTTTTCGATTCCTGGGCTCAGTGAT 306 consensus_10202#2 TGATAGGTATATCCGAAACTTGGATAACATCTCA-GTTTACGGACCAGGAGCT-AGCAAT 320 * * ***** * * ****** * **** ** * * *** ** ** consensus_10202#0 GACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCATCAATTGATTTCCGCAC 538 consensus_10202#1 GACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAA 366 consensus_10202#2 AACTGG----AATGTCTTGTTTCCN----------------------------------- 341 ** ** * ****** * consensus_10202#0 GATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTG 598 consensus_10202#1 AATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTA----- 421 consensus_10202#2 ------------------------------------------------------------ consensus_10202#0 AGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGG 658 consensus_10202#1 ------------------------------------------------------------ consensus_10202#2 ------------------------------------------------------------ consensus_10202#0 GGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAA 718 consensus_10202#1 ------------------------------------------------------------ consensus_10202#2 ------------------------------------------------------------ consensus_10202#0 CACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTT 778 consensus_10202#1 ------------------------------------------------------------ consensus_10202#2 ------------------------------------------------------------ consensus_10202#0 CTTGTTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGCTATCATTTACCAAATT 838 consensus_10202#1 ------------------------------------------------------------ consensus_10202#2 ------------------------------------------------------------ consensus_10202#0 CTTAGACAACTTATCTCTCAGACCTGTCAGTAAAGTAATGATAGGACCCAACATAACTAC 898 consensus_10202#1 ------------------------------------------------------------ consensus_10202#2 ------------------------------------------------------------ consensus_10202#0 CGTATCGGTAGGCAGGTAACACATACCTACCTTGGTTT 936 consensus_10202#1 -------------------------------------- consensus_10202#2 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||