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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 936 fasta sequence
[CCGGCACACCTTGCACAATGATATTTCGTCCACGGAAGAACGCCTCACGAGATTCCTTAGGGATGTTCCGGATGAGATTTCGTTCAGAATACGGTATGTCGGGCAGTATTCTTACGTTCCCATCGGACCTCAGTAAGTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAAGTGTAACACGAAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCCGTGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCCAGCCTCTTGATTAATTCTCCCCAGAGCATCCTGTCGTTTTTGTCCTGCAAACTGAGAGGAAGGTC-GGGGTTGTCAATAAGGTTCATGATTATGACAGAGTCGTTACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCATCAATTGATTTCCGCACGATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAACACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTTCTTGTTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGCTATCATTTACCAAATTCTTAGACAACTTATCTCTCAGACCTGTCAGTAAAGTAATGATAGGACCCAACATAACTACCGTATCGGTAGGCAGGTAACACATACCTACCTTGGTTT]
[-] EMBL CD141954 [CCGGCACACCTTGCACAATGATATTTCGTCCACGGAAGAACGCCTCACGAGATTCCTTAGGGATGTTCCGGATGAGATTTCGTTCAGAATACGGTATGTCGGGCAGTATTCTTACGTTCCCATCGGACCTCAGTAAGTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAAGTGTAACACGAAGCAGCCTCGGGTGGTTTAGGTGGTTAG ]
[+] EMBL CD088487 [ AGTAAGTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAAGTGTAACACGTAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCCGTGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCCAGCCTCTTGATTAATTCTCCCCAGAGCATCCTGTCGTTTTTGTCCTGCAAACTGAGAGGAAGGTC GGGGTTGTCAATAAGGTTCATGATTATGACAGAGTCGTTACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCATCAATTGATTTACGCACGATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGNGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAACACATCATCACTCGTGCTGTTAACAGCACCGTCGATATCCGACCTGCCAGT ]
[+] EMBL CD088522 [ GTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAAGTGTAACACGAAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCCGTGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCCAGCCTCTTGATTAATTCTCCCCAGAGCATCCTGTCGTTTTTGTCCTGCAAACTGAGAGGAAGGTCGGGGGTTGTCAATAAGGTTCATGATTATGACAGAGTCGTTACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCATCAATTGATTTACGCACGATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGNGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTC ACACATCATCACTCGTGCTGT ]
[-] EMBL CD159432 [ CTGGCTAGCAGGACGTCCTTTACGTCGGAGGCATTCTTAAGTGTAACACGGAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCCGCGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCAAGCCTCTTGTTTAATTCTCCCCAGAGCATCCTATCATTTTTATCCTGCAAACTGAGAGGAAGGTC GGGGCTGTCAATAAGGTTCATGATTATGACAGAGTCGTCACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGCTTGGTATCTTGTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGAGCTCAGTGATGACCGGGCGGACA ]
[-] EMBL CD127974 [ GGTC GGGGTTGTCAATAAGGTTCATGATTATGACAGAGTAGTCAAGAACCGCAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTGGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAAAATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAACACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTTCTTATTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGATATCATTTACCGAATTCTTAGACAACTTATCTCTCAGACCTGTCAGTAAAGTAATGATAGGACCCAACATAACTACCGTATCGGTAGGCAGGTAACACATACCTACCTTGGTTT]
[-] EMBL CD182968 [ gTGTTTGG GAGGAGGCGCGTNTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAAAATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAACACATCAT ]
[+] EMBL CD122010 [ CCGGGCGGACAGTCTTGGGGGTAGACTGTGCGGCCAAAGCATCAATTGATTTCCGCACGGTACTTGGGACGTTCAGTTTCGGCGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTGAGTCCAACCACCTACAGGATTTTTGGGAACCACTGTCTCATTCAAGGACTGTTCCCTGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAAGATGGTGCTGAGTTTCAGCACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTTCTTGTTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGCTATCATTTACCAAATTCTTAGACAACTTATCTCTCAG ]
[-] EMBL CD121939 [ GGATTTTTGGGAACCACTGTCTCATTCAAGGACTGTTCCCTGGGGGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAAGATGGTGCTGAGTTTCAGCACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTTCTTGTTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGCTATCATTTACCAATTTCTTAGACAACTTATCTCTCAGA ]
consensusID : consensus_10202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[TGCGAAATAAAGACATCCCAGTTATTGCTAACTCTGGGTCCGTAAACTGAGACGTNATCCAAGTTTCGGATATTCCTATCAGATGGGCATCATNAGCGTTGCTAAGTTCACGTAGCTCATCCATTTTGTTTGGCAAGCTCGCGGCGTTCGTGTATAGGCAGGAAGGTCGGGGTTGTCAATAAGGTTCATGATTATGACAGAGTAGTCAAGAACCGCAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTGGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAAAATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTA]
[-] EMBL CD198582 [TGCGAAATAAAGACATCCCAGTTATTGCTAACTCTGGGTCCGTAAACTGAGACGTNATCCAAGTTTCGGATATTCCTATCAGATGGGCATCATNAGCGTTGCTAAGTTCACGTAGCTCATCCATTTTGTTTGGCAAGCTCGCGGCGTTCGTGTATAGGCAGGAAGGTCGGGGTTGTCAATAAGGTTCATGATTATGACAGAGTAGTCAAGAACCGCAATTGATTTCCCAGGTTTTCCAGGGCGTCTAGGTTTGGTATCTTGTTGTTTGGATGTGGAGGCGCGTTTTCGATTCCTGGGCTCAGTGATGACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAAAATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTA]
consensusID : consensus_10202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 341 fasta sequence
[GCACAAACGAAAGCTGGAGCTGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACATCGTATAGGTAGGCTACCTGTCCACTCACACACGGCTCATATAGACAAACAAGAAGAGGCTCACGCGTTCCAAATTGAAAGCATAAACTGCCTATACACGAACGCCGCGAGCTTGCCAAACAAAATGGATGAGCTACGTGAACTTAGCAACGCTAATGATGCCCATCTGATAGGTATATCCGAAACTTGGATAACATCTCAGTTTACGGACCAGGAGCTAGCAATAACTGGAATGTCTTGTTTCCN]
[-] EMBL CD119539 [GCACAAACGAAAGCTGGAGCCGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACATCGTATAGGTAGGCTACCTGTCCACTCACACACGGCTCATAGAGgc ]
[-] EMBL CD119293 [GCACAAACGAAAGCTGGAGCTGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACATCGTATAGGTAGGCTACCTGTCCACTCACACA ]
[+] EMBL CD152862 [ ACAAACGAAAGCTGGAGCTGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACATCGTATAGGTAGGCTACCTGTCCACTCACACACGGCTCATATAGACAAACAAGAAGAGGCTCACGCGTTCCAAATTGAAAGCATAAACTGCCTATACACGAACGCCGCGAGCTTGCCAAACAAAATGGATGAGCTACGTGAACTTAGCAACGCTAATGATGCCCATCTG ]
[+] EMBL CD152721 [ ACAAACGAAAGCTGGAGCTGACAATTCCACTCGTGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGT ]
[+] EMBL CD088082 [ TACCAACTCGGTAAACATTGTATAGGTAGGCTACCTGTCCACTCACGCACGGCTCATATAGACAAACAGGAAGAAGCTCACGCGTTCCAAATTGAAAGCATAAACTGCCTATACACGAAC CCGCGAGCTTGCCAAACAAAATGGATGAGCTACGTGAACTTAGCAACGCTAATGATGCCCATCTGATAGGTATATCCGAAACTTGGATAACATCTCAGTTTACGGACCAGGAGCTAGCAATAACTGGAATGTCTTGTTTCCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10202#0 CCGGCACACCTTGCACAATGATATTTCGTCCACGGAAGAACGCCTCACGAGATTCCTTAG 60
consensus_10202#1 ------------------------------------------------------------
consensus_10202#2 ------------------------------------------------------------
consensus_10202#0 GGATGTTCCGGATGAGATTTCGTTCAGAATACGGTATGTCGGGCAGTATTCTTACGTTCC 120
consensus_10202#1 ------------------------------------------------------------
consensus_10202#2 ------------------------------------------------------------
consensus_10202#0 CATCGGACCTCAGTAAGTGACTGGCTAGCAGGACGTCCTCTACGTCGGAGGCATTCTTAA 180
consensus_10202#1 --------------------------TGCGAAATAAA---GACATCCCAGTTATTGCTAA 31
consensus_10202#2 -------------------------GCACAAACGAAAGCTGGAGCTGACAATTCCACTCG 35
* *
consensus_10202#0 GTGTAACACGAAGCAGCCTCGGGTGGTTTAGGTGGTTAGAGTCCTTCCCCCGAGTGAGCC 240
consensus_10202#1 CTCTGGGTCC--GTAAACTGAGACGTNATCCAAGTTTCGGATATTCCTATCAGATGGGCA 89
consensus_10202#2 TGGACTGTCTTGATCATAAAAAAAACGTGTAAAGGACAGGGACTACCAACTCGGTAAACA 95
* * * * * *
consensus_10202#0 GTGTGACGGTCAAAGGCTCTATTCTAGGGAGTTCCAGCCTCTTGATTAATTCTCCCCAGA 300
consensus_10202#1 TCATNAGCGTT----GCTAAGTTC-ACGTAGCTCATCCATTTTGTTTGGC--------AA 136
consensus_10202#2 TCGTATAGGTA---GGCTACCTGTCCACTCACACACGGCTCATA-TAGAC--------AA 143
* ** *** * * * * * *
consensus_10202#0 GCATCCTGTCGTTTTTGTCCTGCAAACTGAGAGGAAGGTCGGGGTTGTCAATAAGGTTCA 360
consensus_10202#1 GC-TCGCGGCGTTCGTGT-------ATAGGCAGGAAGGTCGGGGTTGTCAATAAGGTTCA 188
consensus_10202#2 ACAAGAAGAGGCTCACGCGTTCCAAATTGAAAGCATAAACTGC-CTATACACGAACGCCG 202
* * * * * * * ** * * * * * * * *
consensus_10202#0 TGATTATGACAGA-GTCGTTACGAACCGTAATTGATTTCCCAGGTTTTCCAGGGCGTCTA 419
consensus_10202#1 TGATTATGACAGA-GTAGTCAAGAACCGCAATTGATTTCCCAGGTTTTCCAGGGCGTCTA 247
consensus_10202#2 CGAGCTTGCCAAACAAAATGGATGAGCTACGTGAACTTAGCAACGCTAATGATGCCCATC 262
** ** ** * * * * * * ** ** * ** *
consensus_10202#0 GGTTTGGTATCTT-GTTGTTTGGATGTCGAGGCGCGTTTTCGATTCCTGGGCTCAGTGAT 478
consensus_10202#1 GGTTTGGTATCTT-GTTGTTTGGATGTGGAGGCGCGTTTTCGATTCCTGGGCTCAGTGAT 306
consensus_10202#2 TGATAGGTATATCCGAAACTTGGATAACATCTCA-GTTTACGGACCAGGAGCT-AGCAAT 320
* * ***** * * ****** * **** ** * * *** ** **
consensus_10202#0 GACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCATCAATTGATTTCCGCAC 538
consensus_10202#1 GACCGGGCGGACAGTCTTGGGTGTAGACTGTGCGGCCAAAGCACCAATTGATTTCCGCAA 366
consensus_10202#2 AACTGG----AATGTCTTGTTTCCN----------------------------------- 341
** ** * ****** *
consensus_10202#0 GATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTAACGTG 598
consensus_10202#1 AATACTTGGGACGTTCAGTTTCGGAGGGGACGCTTGGGCTTTATTACTCCTGTTA----- 421
consensus_10202#2 ------------------------------------------------------------
consensus_10202#0 AGTCCATCCACCTACAGGATTTTTAGGAACCACTGTCTCATTCAAGGACCGTTCCCCGGG 658
consensus_10202#1 ------------------------------------------------------------
consensus_10202#2 ------------------------------------------------------------
consensus_10202#0 GGACCCAAGTTTACTGAGGGAGTCGATGACAGTCGATGTTAGGATGGTGCTGAGTTTCAA 718
consensus_10202#1 ------------------------------------------------------------
consensus_10202#2 ------------------------------------------------------------
consensus_10202#0 CACATCATCACTCGTGCTGTTAACAGCACCGTCGATAACCGACCTGTCAGTATCCTTTTT 778
consensus_10202#1 ------------------------------------------------------------
consensus_10202#2 ------------------------------------------------------------
consensus_10202#0 CTTGTTTGCCCTATGCGTTCCAGCTTTGTTACCCGTCATGATGCTATCATTTACCAAATT 838
consensus_10202#1 ------------------------------------------------------------
consensus_10202#2 ------------------------------------------------------------
consensus_10202#0 CTTAGACAACTTATCTCTCAGACCTGTCAGTAAAGTAATGATAGGACCCAACATAACTAC 898
consensus_10202#1 ------------------------------------------------------------
consensus_10202#2 ------------------------------------------------------------
consensus_10202#0 CGTATCGGTAGGCAGGTAACACATACCTACCTTGGTTT 936
consensus_10202#1 --------------------------------------
consensus_10202#2 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||