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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 886 fasta sequence
[GAGGACGAATGACTTGAGTG-AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGATGGTGACAGGTTAATTCTATCAATGGACAATGTATACATGTTCCATTAGTCATCGTAGAGAATTCATGATGATTACTTAGTAAAGCATTACAACCACTACTATTAATTGTAGTAGGGACATTTGATGAAGAAGAGCATAATTCACAACTGGATGATAACACTGATGAGGTTCCATGTTCAAGATTACGTAACTGTGGTGGTTGGTAAACATTTGAAGGTTTTGCTCGTAATATTGGAGGATTTTTCGAGGATAAACCAAGTGGTGCTTCATTATCATCATTATCATTGTTTGTGGTAGTACTAGTAGTAGTATTAGCAACATTTTTGTAACTGGTTGTGTCGACGCCACCACTGGAGTAGTTATTCCACGACTTTTTACGTCCTAATGAATGAT]
[-] EMBL CD120509 [GAGGACGAATGAC TGAGTG AATAGCTG TAAACGATCGTGAGA CTTTTCAACCCAAAAACGCTAGTGAATGGACCTTTTACACTANCTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTGCTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGCATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTAC ]
[+] EMBL CD120216 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTG ]
[+] EMBL CD120110 [ GGACGAATGACTTGAGTG AATACCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCTCTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATGGTGGACCAACTATTGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTGGAAAAAAGTGTACTG ]
[+] EMBL CD120108 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGAGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGCTCTTCTCGTTTAATC ]
[+] EMBL CD120357 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTA ]
[+] EMBL CD120516 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGNTGATATTTTATGAATAGGGTCATG ]
[+] EMBL CD120066 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAA ]
[+] EMBL CD120155 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAGTGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATNGTAGTAGTTTGGTAGTAGTATAGATGG ]
[+] EMBL CD116842 [ GACGAATGACTTGAGTG AATAGCTGATAGACGATCGCGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACATCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACCGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGATGGTGACAGGTTAATTCTATCAATGGACAATGTATACATGTTCCATTAGTCATCGTAGAGA ]
[-] EMBL CD120325 [ GACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGCGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTAC ]
[-] EMBL CD120361 [ GACGAATGAC TGAGTGAAATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTAC ]
[-] EMBL CD091001 [ GAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGATGGTGACAGGTTAATTCTATCAATGGACAATGTATACATGTTCCATTAGTCATCGTAGAGAATTCATGATGATTACTTAGTAAAGCATTACAACCACTACTATTAATTGTAGTAGGGACATTTGATGAAGAAGAGCATAATTCACAACTGGATGATAACACTGATGAGGTTCCATGTTCAAGATTACGTAACTGTGGTGGTTGGTAAACATTTGAAGGTTTTGCTCGTAATATTGGAGGATTTTTCGAGGATAAACCAAGTGGTGCTTCATTATCATCATTATCATTGTTTGTGGTAGTACTAGTAGTAGTATTAGCAACATTTTTGTAACTGGTTGTGTCGACGCCACCACTGGAGTAGTTATTCCACGACTTTTTACGTCCTAATGAATGAT]
consensusID : consensus_10204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence
[TCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGAAGGCTACAGTGGAATCGATTCCC]
[-] EMBL CD134148 [TCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGAAGGCTACAGTGGAATCGATTCCC]
[-] EMBL CD120300 [ TTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10204#0 GAGGACGAATGACTTGAGTGAATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAA 60
consensus_10204#1 ------------------------------------------------------------
consensus_10204#0 ACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGA 120
consensus_10204#1 ---------------------------------------------TCGAAAACATGTGGA 15
***************
consensus_10204#0 TGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGA 180
consensus_10204#1 TGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGA 75
************************************************************
consensus_10204#0 CTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTA 240
consensus_10204#1 CTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTA 135
************************************************************
consensus_10204#0 ATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACT 300
consensus_10204#1 ATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACT 195
************************************************************
consensus_10204#0 GGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTT 360
consensus_10204#1 GGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTT 255
************************************************************
consensus_10204#0 GATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTC 420
consensus_10204#1 GATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTC 315
************************************************************
consensus_10204#0 AGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAG 480
consensus_10204#1 AGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAG 375
************************************************************
consensus_10204#0 TGATGTGTATGATGGTGACAGGTTAATTCTATCAATGGACAATGTATACATGTTCCATTA 540
consensus_10204#1 TGATGTGTATGAAGGCTACAG-TGGAATCGATTCCC------------------------ 410
************ ** **** * * ** **
consensus_10204#0 GTCATCGTAGAGAATTCATGATGATTACTTAGTAAAGCATTACAACCACTACTATTAATT 600
consensus_10204#1 ------------------------------------------------------------
consensus_10204#0 GTAGTAGGGACATTTGATGAAGAAGAGCATAATTCACAACTGGATGATAACACTGATGAG 660
consensus_10204#1 ------------------------------------------------------------
consensus_10204#0 GTTCCATGTTCAAGATTACGTAACTGTGGTGGTTGGTAAACATTTGAAGGTTTTGCTCGT 720
consensus_10204#1 ------------------------------------------------------------
consensus_10204#0 AATATTGGAGGATTTTTCGAGGATAAACCAAGTGGTGCTTCATTATCATCATTATCATTG 780
consensus_10204#1 ------------------------------------------------------------
consensus_10204#0 TTTGTGGTAGTACTAGTAGTAGTATTAGCAACATTTTTGTAACTGGTTGTGTCGACGCCA 840
consensus_10204#1 ------------------------------------------------------------
consensus_10204#0 CCACTGGAGTAGTTATTCCACGACTTTTTACGTCCTAATGAATGAT 886
consensus_10204#1 ----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||