These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1106 fasta sequence [AAGGTTTCGGGAGGGGAAATAAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAAAATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGATGCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACT-GAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATG-CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTATAACATGATGCACCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGCTCGCTTATCACTGAAATGATTTTGT-G-AAAAAATCGACTAT-TGTCTAACACATTTACTAGTATTATTTATTAATTGTTACCATCATTTAATTTTAC] [+] EMBL CD164941 [AAGGTTTCGGGAGGGGAAATAAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAGAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAAAATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGATGCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGT ] [+] EMBL CD084237 [ GGAAAATAAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATAT AAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAAAATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGATGCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACT GAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTT ] [-] EMBL CD190026 [ AAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATAT ] [+] EMBL CD080150 [ CACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAAAATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGATGCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACTCGAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATGCCTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAn ] [+] EMBL BF936364 [ CACATCACCGACTGTTTCTCCTTATCATGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAA ] [+] EMBL CD185392 [ c GAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGC AACGTTTATAACATGATGCACC ] [+] EMBL CD185373 [ c GAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTATAACATGATGCACCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGCTCGCTTATCACTGAAATGATTTTGT G AAAAAATCGACTAT TGTCTAACACATTTACTAGTATTATNNATTAATNGTTACCATCATNNAAATTTA ] [-] EMBL CD133815 [ ATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGANAACAGTCTTGAAGTTTCACACGCTATTGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATCAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTATAACATGATGCACCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGTTCGCTTATCACTGAAATGATTTTGT GAAAAAAATCGACTATATGTCTAACACATTTACTAGTATTATTTATTAATTGTTACAATCATTTAATTTTAC] [-] EMBL CD076963 [ TCACACGCTATTGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGG GGGGGGTTCTTCAAAATTANTTGTACAAACCCNAATTNACCTATTTTTGTTTCATTTCCCAAAACGTTTATAACATAATGCACCTTCAAATTTCTTGTATACCTTTAAAAAAATTATATATTTTCCATTGCTCCCTTATCACTNAAATAATTTTNTAA AAAAAATCNACTATATTTCTAACACATTTACTANTATTATTTATTAATTGTTACCAGCATTTTAT ] [-] EMBL CD182998 [ TGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAAATTATTCTGAATATTTTTCATCGGTAACAGGGTACTCACAAGGTCATCTTTGTATTTTGCTCTTTCTAAACCCTAATTTCAAGGATATTTTTTCTTCGAAAT ] [-] EMBL CD183134 [ TGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTTCAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGGTAACAGGTTACTCACAAGGTCATCTTTGTATTTTGCTCTTTCTAAACCCTAATTTCAAGGATATTTTTTCTTCGAAAT ] [-] EMBL CD182955 [ TGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAAT ] consensusID : consensus_10206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [CAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACTCGAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATGCTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGTTAGTTGTATACTTGTGTAATATTTCTCACACTAGCCGGTATGAACCCATCCAGCATTCGCATTATGTACATAACTATATGTTTTCAAATATGGTCTTATAACTTGTGTAGTGGGCCACTACTAAGTGTTCACAGAAATATTTTGGAGTGACCTTACCTTTCAGGCTTAAAC] [-] EMBL CD119098 [CAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACTCGAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATGCTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGTTAGTTGTATACTTGTGTAATATTTCTCACACTAGCCGGTATGAACCCATCCAGCATTCGCATTATGTACATAACTATATGTTTTCAAATATGGTCTTATAACTTGTGTAGTGGGCCACTACTAAGTGTTCACAGAAATATTTTGGAGTGACCTTACCTTTCAGGCTTAAAC] consensusID : consensus_10206#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [CTCATCTGGTTACTCACAAGTTCACCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTTTAACATGATGCCCCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGCTCGCTTATCCACTGGAAATGATTTTGTGAAAAAAAATCGGACTTATATGTCTAAACNACNATTTAACTAAGTAATTAATTTAATAAATTGTTAACAATCAATTTAAATT] [-] EMBL AA999531 [CTCATCTGGTTACTCACAAGTTCACCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTTTAACATGATGCCCCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGCTCGCTTATCCACTGGAAATGATTTTGTGAAAAAAAATCGGACTTATATGTCTAAACNACNATTTAACTAAGTAATTAATTTAATAAATTGTTAACAATCAATTTAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10206#0 AAGGTTTCGGGAGGGGAAATAAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATC 60 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 ACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTT 120 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 CAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATT 180 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 GCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAG 240 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 CAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAA 300 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 AATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGAT 360 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 GCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGTGAAAAATATTGGT 420 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 GCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACTGAAAAGG 480 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 TCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAA 540 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 ATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAA 600 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 AGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATGCTCCTGTTG 660 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 TTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTA 720 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 ------------------------------------------------------------ consensus_10206#0 CAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCA 780 consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 --------CAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGC 52 consensus_10206#0 TCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTC 840 consensus_10206#2 -------------------------------------CTCATCTGGTTACTCACAAGTTC 23 consensus_10206#1 GCACCATGGATTTGGAGAAACTCGAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAG 112 * * * * consensus_10206#0 ATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAG 900 consensus_10206#2 ACCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAG 83 consensus_10206#1 ATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAG 172 * ** **** ** * **** ** * * * * * * * * ** consensus_10206#0 TTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTATAACATGATG 960 consensus_10206#2 TTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTTTAACATGATG 143 consensus_10206#1 CTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAG 232 * * *** * * * * ** * *** ** * *** * consensus_10206#0 CACCGTCAGATTTCTTGTATACCTTTGAAGA-AATTATATATTTTGCATTGCTC---GCT 1016 consensus_10206#2 CCCCGTCAGATTTCTTGTATACCTTTGAAGA-AATTATATATTTTGCATTGCTC---GCT 199 consensus_10206#1 TTTCACACGCTATTGCAGATGCTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGT 292 * * * * ** * ** * * ** * *** * ** * * consensus_10206#0 TATC-A------CTG-AAATGATTTTGTGA-AAAAA--TCGA--CTAT-TGTCTAA--CA 1060 consensus_10206#2 TATCCA------CTGGAAATGATTTTGTGA-AAAAAAATCGGACTTATATGTCTAAACNA 252 consensus_10206#1 CATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGTTAGTTGTATACTTGTGTAATA 352 *** * *** * **** * * * ** ** * *** * * * consensus_10206#0 CA-TTTA-CTAGTATTAT-TTATTAATTG--TTACCATCATTTAATTTT-AC-------- 1106 consensus_10206#2 CNATTTA-ACTAAGTAAT-TAATTTAATAAATTGTTAACAATCAATTTA-AATT------ 303 consensus_10206#1 TTTCTCACACTAGCCGGTATGAACCCATCCAGCATTCGCATTATGTACATAACTATATGT 412 * * * * * * ** * * * consensus_10206#0 ------------------------------------------------------------ consensus_10206#2 ------------------------------------------------------------ consensus_10206#1 TTTCAAATATGGTCTTATAACTTGTGTAGTGGGCCACTACTAAGTGTTCACAGAAATATT 472 consensus_10206#0 ------------------------------ consensus_10206#2 ------------------------------ consensus_10206#1 TTGGAGTGACCTTACCTTTCAGGCTTAAAC 502 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||