These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1030 fasta sequence [TTTTTTTTTTTTTTGATCAGATTCTTTTGGTTCGTCAATCAATCAACAGCGAGAAATACATAGAAGACACGATGGATCTTTAGTGAATATATGACTATAGTACACAATACAGCAACGTTATAGAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAAAAAAGGGATTATGCTTGAAAACACAGAACCAAAATTTATATTAGATAAATATTTATCACGAATAGCTGTTTAATTAAACCCTTTGAACAAAACTTGTGTTCTTAGTTATCCGCACCAAGCTGAATCACTTTCTTTTTAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAAGCCATATGTTA-ACACAGAAACCAAAAGGAT-GGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA-ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGG-TC-G-AGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGAGCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTTGCCGCTAACGAGTTTTACAGAAATCGAACGAAGC-AAGAATGCTAAGCAACCAGACACATTGAAATAGGTGTAGTTATCCGTGTGAGTAAGGCTCTGAGCTGCACATGAACTAGTTAGCACGCAAACCAACAAAACTAACAGGACTCTATGATAGCTCATATGAAGACTCATTAAATGAGCGCCTTAGATTAGG] [+] EMBL AI394906 [TTTTTTTTTTTTTTGATCAGATTCTTTTGGTTCGTCAATCAATCAACAGCGAGAAATACATAGAAGACACGATGGATCTTTAGTGAATATATGACTATAGTACACAATACAGCAACGTTATACAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAACAAAGGGATTATGCTTGAAAACACAGAACCAATATTTATATTAGATAAATATTTATCACGAGTAGCTGTTTAACTAACCCCTTTGGA AAAACTTGGGTTCct ] [+] EMBL CD150393 [ GAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAAAAAAGGGATTATGCTTGAAAACACAGAACCAAAATTTATATTAGATAAATATTTATCACGAATAGCTGTTTAATTAAACCCTTTGAACAAAACTTGTGTTCTTAGTTATCCGCACCAAGCTGAATCACTTTCTTTTTAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGGNTC G AGATTTCATTTACATTTGATGACGTNGAAACGAGCANAGATTTTAGATCAGAGCATTTA ] [+] EMBL CD150383 [ GAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAAAAAAGGGATTATGCTTGAAACCACAGACCCAAAATTTATTTTAGATAATTATTTATCACGAATGGTTGTTTAATTAAACCTTTAGAACAAACTTTGTGTTCTTATTTATCCCCACCAAGCTGAATCACTTTCTTTTTAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAACCCTTTTGTTACCCACACAACCCAGGGGGGTGGGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGNATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGA TACTGNTGCAn ] [-] EMBL CD177786 [ CCCTTTGAACAAAACTTGTGTTCTTAGTTATCCGCACCAAGCTGAATCATTTTCTTTTAAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGTCCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGACACGGTTGGACCTGGATGCTAGTGAACTGAATGGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATCTGATGGCCAAGGGATTTCCAGGCACATTGACGC ] [+] EMBL CD177802 [ AGATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTT ] [+] EMBL CD171571 [ AGATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTT ] [-] EMBL CD177773 [ GATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGGCCAGACCCCAATACTGAAGTATCCGACACAATCTGTGACATCACCAAACACACCATCTTTTTCGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGC ] [+] EMBL CD199725 [ ACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTC ] [-] EMBL CD189193 [ ACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGG TCGG AGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGAGCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTTGCCGCTAACGAGTTTTACAGAAATCGAACGA ] [+] EMBL CD177692 [ TGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGG TCGG AGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGAGCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTTGCCGCTAACGAGTTTTACAGAAATCGAACGAAGC AAGAATGCTAAGCAACCAGACACAT ] [-] EMBL BE505143 [ GGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGG TC GNAGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGAGCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTTGCCGCTAACGAGTTTTACAGAAATCGAACG AGCAAAGAATGCTAAGCANCCAGACACATTGAAATAGGTGTAGTTATCCGTGTGAGTAAGGCTCTGAGCTGCACATGAACTAGTTAGCACGCAAACCAACAAAAC ] [+] EMBL CD181676 [ GTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTCGCCGCTAACGAGCTTTACAGAAATCGAACG AGCAAAGAATGCTAAGCAACCAGACACATTGAAATAGGTGTAGTTATCCGTGTGAGTAAGACTCTGAGCTGCACATGAACTAGTTAGCACGCAAACCAACAAAACTAACAGGACTCTATGATAGCTCATATGAAGACTCATTAAATGAGCGCCTTAGATTAGG] consensusID : consensus_10208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [TTCTTTATTTTTTTTAAATTGGTCCGGATCTCTTAATTTTTTAAACACACACAAGAGAGAGATATATATAGGAGACAATGGGGCTCTATAGTGTATATGTGTCTAGTGTACACAACAGCAGAGCTATATAGAGAGAATCATCAAGAATAGGAAGTCTTGATGATAAATAATAAAGGGAGTATGCTTGTTAACACAGCACCACCATTTATATTAGATAAATATTTATCACGACTAGCTGTTTAATTAAACCCTTTGAACAAAACTTGTGTTCTTACTTATCCGCACGAAGCTGCAGCATTCACTTCTTATGATCGTCATACATTTCACTCAGCTGGCGAGATACCAGCATGAATGAGCCATCTATTTGTACAGACAGCAAACAGA] [+] EMBL AI395233 [TTCTTTATTTTTTTTAAATTGGTCCGGATCTCTTAATTTTTTAAACACACACAAGAGAGAGATATATATAGGAGACAATGGGGCTCTATAGTGTATATGTGTCTAGTGTACACAACAGCAGAGCTATATAGAGAGAATCATCAAGAATAGGAAGTCTTGATGATAAATAATAAAGGGAGTATGCTTGTTAACACAGCACCACCATTTATATTAGATAAATATTTATCACGACTAGCTGTTTAATTAAACCCTTTGAACAAAACTTGTGTTCTTACTTATCCGCACGAAGCTGCAGCATTCACTTCTTATGATCGTCATACATTTCACTCAGCTGGCGAGATACCAGCATGAATGAGCCATCTATTTGTACAGACAGCAAACAGA] consensusID : consensus_10208#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [GCCGATTCTTTTATTTGGGGGATCAATCAACAGCGAGAAATAAATAGAGGACAAGATNGATCTTTAGTGAATATATGGCTATNGTNCACAATACAGCAACGTTATAGAGAGANAATCAAAAAGAATAGGAAGTCTTGAATATAANTGGGGGGGGGATTAGGCTTCAGCACACAAAACCAAAATTTATATTAGATAAATNTTTTTCACNAATACCTTTTTAATTAAACCCTTTTAACAAAACTTTTTCTCNT] [+] EMBL AA999271 [GCCGATTCTTTTATTTGGGGGATCAATCAACAGCGAGAAATAAATAGAGGACAAGATNGATCTTTAGTGAATATATGGCTATNGTNCACAATACAGCAACGTTATAGAGAGANAATCAAAAAGAATAGGAAGTCTTGAATATAANTGGGGGGGGGATTAGGCTTCAGCACACAAAACCAAAATTTATATTAGATAAATNTTTTTCACNAATACCTTTTTAATTAAACCCTTTTAACAAAACTTTTTCTCNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10208#0 ------TTTTTTTTTTTTTTGATCAGATTCTTTTGGTTCGTCAATCAATCAACAGCGAGA 54 consensus_10208#2 ----------------------GCCGATTCTTTTATTTGGGGGATCAATCAACAGCGAGA 38 consensus_10208#1 TTCTTTATTTTTTTTAAATTGGTCCGGATCTCTTAATTTTTTAAACACACACAAGAGAGA 60 * * *** ** ** * ** ** ** **** consensus_10208#0 AATACATAGAAGACACGATGGATCTTTAGTGAATATATGACTATAGTACACAATACAGCA 114 consensus_10208#2 AATAAATAGAGGACAAGATNGATCTTTAGTGAATATATGGCTATNGTNCACAATACAGCA 98 consensus_10208#1 GATATATATAGGAGACAATGGGGCTCTATAGTGTATATGTGTCTAGTGTACACAACAGCA 120 *** *** * ** * ** * ** ** * ****** * * ** *** ****** consensus_10208#0 ACGTTATAGAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAAAAAAGGGATT 174 consensus_10208#2 ACGTTATAGAGAGANAATCAAAAAGAATAGGAAGTCTTGAATATAANTGGGGGGGGGATT 158 consensus_10208#1 GAGCTATATAGAGAGAATCATCAAGAATAGGAAGTCTTGATGATAAATAATAAAGGGAGT 180 * **** ***** ***** ****************** **** * **** * consensus_10208#0 ATGCTTGAAAACACAGAACCAAAATTTATATTAGATAAATATTTATCACGAATAGCTGTT 234 consensus_10208#2 AGGCTTCAGCACACAAAACCAAAATTTATATTAGATAAATNTTTTTCACNAATACCTTTT 218 consensus_10208#1 ATGCTTGTTAACACAGCACCACCATTTATATTAGATAAATATTTATCACGACTAGCTGTT 240 * **** ***** **** ***************** *** **** * ** ** ** consensus_10208#0 TAATTAAACCCTTTGAACAAAACTTGTGTTCTTAGTTATCCGCACCAAGCTGAATCACTT 294 consensus_10208#2 TAATTAAACCCTTTTAACAAAACTTTTTCTCNT--------------------------- 251 consensus_10208#1 TAATTAAACCCTTTGAACAAAACTTGTGTTCTTACTTATCCGCACGAAGCTGCAGCATTC 300 ************** ********** * ** * consensus_10208#0 TCTTTTTAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAAGCCAT 354 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ACTTCTTATGATCGTCATACATTTCACTCAGCTGGCGAGATACCAGCATGAATGAGCCAT 360 consensus_10208#0 ATGTTAACACAGAAACCAAAAGGATGGAGACGATAAGTGATGACCAGACACCAATACTGA 414 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 CTATTTGTACAGACAGCAAACAGA------------------------------------ 384 consensus_10208#0 AGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGAACGGTTGGA 474 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 CCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTG 534 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 GTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGA 594 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 TGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATAC 654 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 TAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACAT 714 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 TAAGGTCGAGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGA 774 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 GCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGT 834 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 TTTGCCGCTAACGAGTTTTACAGAAATCGAACGAAGCAAGAATGCTAAGCAACCAGACAC 894 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 ATTGAAATAGGTGTAGTTATCCGTGTGAGTAAGGCTCTGAGCTGCACATGAACTAGTTAG 954 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 CACGCAAACCAACAAAACTAACAGGACTCTATGATAGCTCATATGAAGACTCATTAAATG 1014 consensus_10208#2 ------------------------------------------------------------ consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 AGCGCCTTAGATTAGG 1030 consensus_10208#2 ---------------- consensus_10208#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||