These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [GAAACATTATATGTCAACATTTAACTGTAAATGCTATTATTCATTCATTCATCGCTGAGTCTTTTGGATTAATTTTATTTAAACATTTTGATCTGAATAAATGCTGATTGTTATTTCTGTTTCAATAATTATATTTATTTACTGTACATTTTAGTGCTTGCATCTTGTATAAAATCAATAAAATACATCATACTGTTAACTATTTCATAAACGTGTCACTATTGTAATTTACACTATTTATCTTTTCGCTGTAAGTTTTGGACACGTTTACAATGTGAATATCAGTTATGATTAGAATTATTATTGTATTTCAGTGCCTTATCGAATTATCAGCTTATATCCATCTATCTATTTACGCTGTGTGTGTATGAAACTGTTTTGTGAATGTTTAAGGTATTTCCGTTTTGTATGTTTCTGCCGCTTTTACTGTTCTCATTGTTTAAAATTTTGACACCTATAGCATTTTCGTTGGCAGTTGTTGTTCAAACTTGTTATACGATTGAAACGAAGAGAGAGGGTCGGTACAGAGTTCCGTTGTTCATGCGTTATTTTATTTAATCTTAATTATAACAATAATGATTTTTGCTTGTAGAAAAAAACCCACTTCAGCCCCACA] [+] EMBL CD082126 [GAAACATTATATGTCAACATTTAACTGTAAATGCTATTATTCATTCATTCATCGCTGAGTCTTTTGGATTAATTTTATTTAAACATTTTGATCTGAATAAATGCTGATTGTTATTTCTGTTTCAATAATTATATTTATTTACTGTACATTTTAGTGCTTGCATCTTGTATAAAATCAATAAAATACATCATACTGTTAACTATTTCATAAACGTGTCACTATTGTAATTTACACTATTTATCTTTTCGCTGTAAGTTTTGGACACGTTTACAATGTGAATATCAGTTATGATTAGAATTATTATTGTATTTCAGTGCCTTATCGAATTATCAGCTTATATCCATCTATCTATTTACGCTGTGTGTGTATGAAACTGTTTTGTGAATGTTTAAGGTATTTCCGTTTTGTATGTTTCTGCCGCTTTTACTGTTCTCATTGTTTAAAATTTTGACACCTATAGCATTTTCGTTGGCAGTTGTTGTTCAAACTTGTTATACGATTGAAACGAAGAGAGAGGGTCGGTACAGAGTTCCGTTGTTCATGCGTTATTTTATTTAATCTTAATTATAACAATAATGATTTTTGCTTGTAGAAAAAAACCCACTTCAGCCCCACA] consensusID : consensus_1021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [GGACCAATTTATAAAATAATGATTTTGTCCATAATTCTGAAGGGATGCAGTAAATCCCTAAACCAGCTTAAAGTTTCATCCTTTTAAAATAAAAAAATTTTCCTTAAGTGGGGGGTATTTTCAATTGAAAATAGGGTATGATGCAATTCGTTAGGGGGCGTTTTTTTCGCAAACATATCCTTGTTGATTAGTGGCCCCAACCAAAAACAGGGGGTCCTAAAAGTCCAATTTTGAATGGGCACCAAAATGAAAATAAGGGGAGACATTTTAAAATTTTTTTAGGAAAATGATGCTTAGTCTAAGTAAATTACAATTTTATTGCTTTTAACATTGAT] [+] EMBL CD075741 [GGACCAATTTATAAAATAATGATTTTGTCCATAATTCTGAAGGGATGCAGTAAATCCCTAAACCAGCTTAAAGTTTCATCCTTTTAAAATAAAAAAATTTTCCTTAAGTGGGGGGTATTTTCAATTGAAAATAGGGTATGATGCAATTCGTTAGGGGGCGTTTTTTTCGCAAACATATCCTTGTTGATTAGTGGCCCCAACCAAAAACAGGGGGTCCTAAAAGTCCAATTTTGAATGGGCACCAAAATGAAAATAAGGGGAGACATTTTAAAATTTTTTTAGGAAAATGATGCTTAGTCTAAGTAAATTACAATTTTATTGCTTTTAACATTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1021#0 GAAACATTATATGTCAACATTTAACTGTAAATGCTATTATTCATTCATTCATCGCTGAGT 60 consensus_1021#1 ------------------------------------------------------------ consensus_1021#0 CTTTTGGATTAATTTTATTTAAACATTTTGATCTGAATAAATGCTGATTGTTATTTCTGT 120 consensus_1021#1 ------------------------------------------------------------ consensus_1021#0 TTCAATAATTATATTTATTTACTGTACATTTTAGTGCTTGCATCTTGTATAAAATCAATA 180 consensus_1021#1 ------------------------------------------------------------ consensus_1021#0 AAATACATCATACTGTTAACTATTTCATAAACGTGTCACTATTGTAATTTACACTATTTA 240 consensus_1021#1 ------------------------------------------------------------ consensus_1021#0 TCTTTTCGCTGTAAGTTTTGGACACGTTTACAATGTGA--ATATCAGTTATGATTA-GAA 297 consensus_1021#1 -------------------GGACCAATTTATAAAATAATGATTTTGTCCATAATTCTGAA 41 **** **** ** * * ** * ** *** *** consensus_1021#0 TTATTATTGTA--TTTCAGTGCCTTATCGAATTATCAGCTTATATCCATCTATCTATTTA 355 consensus_1021#1 GGGATGCAGTAAATCCCTAAACCAGCTTAAAGTTTCATCCTTTTAAAATAAAAAAATTTT 101 * *** * * ** * ** * *** * * * ** * **** consensus_1021#0 CGCTGTGTGTGTATGAAACTGTTTTGTGAAT---GTTTAAGGTATTTCCGTTTTGTATGT 412 consensus_1021#1 CCTTAAGTGGGGGGTATTTTCAATTGAAAATAGGGTATGATGCAATTCGTTAGGGGGCGT 161 * * *** * * * *** *** ** * * * * *** * * ** consensus_1021#0 TTCTGCCGCTTTTACTGTTCTCATTGTTTAAAATTTTGACACCTATAGCATTTTCGTTGG 472 consensus_1021#1 TTTTTTCGCAAACA-TATCCTTGTTGATTAGTGGCCCCA-ACCAAAAACA-----GGGGG 214 ** * *** * * * ** *** *** * *** * * ** * ** consensus_1021#0 CAGTTGTTGTTCAAACTTGTTATACGATTGAAACGAAGAGAGAGGGT--CGGTACAGAGT 530 consensus_1021#1 TCCTAAAAGTCCAATTTTGAATGGGCACCAAAATGAAAATAAGGGGAGACATTTTAAAAT 274 * ** *** *** * *** *** * * *** * * * * * consensus_1021#0 TCCGTTGTTCATGCGTTATTTTATTTAATCTTAATTATAACAATAATGATTTTTGCTTGT 590 consensus_1021#1 TTTTTTAGGAAAATGATGCTTAGTCTAAG-TAAATTACAATTTTATTGCTTTTAACATTG 333 * ** * * * ** * *** * ***** ** ** ** **** * * consensus_1021#0 AGAAAAAAACCCACTTCAGCCCCACA 616 consensus_1021#1 AT------------------------ 335 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||