These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 583 fasta sequence [CATACAAGTAATATGAACCTCAAATCTCGATTTTGTAGCCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGC-TTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAGTAAAGTTCTAAATTTTAGTAATGAATAAAGAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGCAGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAAGTATCTTGTAACAGGCACTTTGAAGCTAATCATTTGACGAAAA] [+] EMBL CD154030 [CATACAAGTAATATGAACCTCAAATCTCGATTTTGTAGCCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAGTAAAGTTCTAAATTTTAGTAATGAATAAAGAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGCAGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAAGTATCTTGTAACAGGCACTTTGAAGCTAATCATTTGACGAAAA] [+] EMBL CD166709 [ cCCAA GTGTAGCTGTGAATAACACCTTATATATTTCAGG CAGTTGGGTCTCGTTCCTGACACAATGC TTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTT ] [+] EMBL CD188033 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ] [+] EMBL CD188085 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ] [+] EMBL CD188116 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ] [+] EMBL CD188118 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ] [+] EMBL CD188154 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ] [+] EMBL CD167280 [ gcTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGGTCCATATCCAGCTCGAGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGGATAATCTGGCTCCTCACTTTTGTCAGGAGC ] [+] EMBL CD132500 [ TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ] consensusID : consensus_10214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 551 fasta sequence [CGGGTCGAAGGTCAGTTTTGATTTTCGGTTTTCCAATTACCTACTTCCGATGTCTAAATTGGGTCGTAAAATTATAAATACACCCAGAGCACCAAAATCTATAGGACCATACAACCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATGTAATCTTTGGTACTAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAGTATGTTGTTTGTTTGAATAATTCGATAATCAGAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT] [-] EMBL BG932206 [CGGGTCGAAGGTCAGTTTTGATTTTCGGTTTTCCAATTACCTACTTCCGATGTCTAAATTGGGTCGTAAAATTATAAATACACCCAGAGCACCAAAATCTATAGGACCATACAACCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGC ] [+] EMBL CD111988 [ CAGTTTTGATTTTCGGTTTTCCAATTACCTACTTCCGATGTCTAAATTGGGTCGTAAAATTATAAATACACCCAGAGCACCAAAATCTATAGGACCATACAACCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAca ] [+] EMBL CD188037 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATGTAATCTTTGGTACTAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAGTATGTTGTTTGTTTGAATAATTCGATAATCAGAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT] consensusID : consensus_10214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATGCAATCTTTGGTACTAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTC] [-] EMBL CD188114 [TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATGCAATCTTTGGTACTAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTC] consensusID : consensus_10214#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [GATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGCAGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAATTATCTTGTAACAGGCACTTTGAAGCTAATCATTTGACGAAAAAGGTTTTTGAAATCCACTCATTAGAACAACCTGCCGAGATAGATGAAAATACATTATGATTGGAGCTTGTACCTCGTCCAGTTATTCACCAGTCAAATGATTCACTGGAGTTACCCACTATTGTTTCTTCTTTACATGTACGGAT] [+] EMBL CD061106 [GATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGCAGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAATTATCTTGTAACAGGCACTTTGAAGCTAATCATTTGACGAAAAAGGTTTTTGAAATCCACTCATTAGAACAACCTGCCGAGATAGATGAAAATACATTATGATTGGAGCTTGTACCTCGTCCAGTTATTCACCAGTCAAATGATTCACTGGAGTTACCCACTATTGTTTCTTCTTTACATGTACGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10214#1 CGGGTCGAAGGTCAGTTTTGATTTTCGGTTTTCCAATTACCTACTTCCGATGTCTAAATT 60 consensus_10214#2 ------------------------------------------------------------ consensus_10214#0 ------------------------------------------------------------ consensus_10214#3 ------------------------------------------------------------ consensus_10214#1 GGGTCGTAAAATTATAAATACACCCAGAGCACCAAAATCTATAGGACCATACAACCAAGG 120 consensus_10214#2 ------------------------------------------------------------ consensus_10214#0 ------------CATACAAGTAATATGAACCTCAAATCTC----GATTTTGTAGCCAAGG 44 consensus_10214#3 ------------------------------------------------------------ consensus_10214#1 TGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAAT 180 consensus_10214#2 ------------------------------------------------------------ consensus_10214#0 TGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAAT 104 consensus_10214#3 ------------------------------------------------------------ consensus_10214#1 GCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGA 240 consensus_10214#2 -----TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGA 55 consensus_10214#0 GCTT-TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGA 163 consensus_10214#3 -------GATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCA---CTTTTGTCA 50 * * * ** * * * * * * *** * *** * * * * * * consensus_10214#1 AATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGC 300 consensus_10214#2 AATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGC 115 consensus_10214#0 AATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGC 223 consensus_10214#3 GGAGCTTTGCTCAAAAATCGTAATTCTTCACAAC----TTTGGAGTGTTCTTGCACGCGC 106 ** ** * * * * * * ** ** * * * ** consensus_10214#1 CGATATGAATGATTTCGCGAAAGTTAATACGATATATGC--GCAATGTAATCTTTGGTAC 358 consensus_10214#2 CGATATGAATGATTTCGCGAAAGTTAATACGATATATGC--GCAATGCAATCTTTGGTAC 173 consensus_10214#0 CGATATGAATGATTTCGCGAAAGTTAATACGATATATGC--GCAAT-------------- 267 consensus_10214#3 AGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAATTATCTTGTAACAGGCACTTTGAAGC 166 * * * * ** * *** ** * * ** * * ** consensus_10214#1 TAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAA 418 consensus_10214#2 TAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAA 233 consensus_10214#0 ----------------------ATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAA 305 consensus_10214#3 TAATCATTTGACGAAAA---AGGTTTTTGAAATCCA---CTCATTAGAACAACCTGCCGA 220 ***** * ***** * * * * ** * ** * consensus_10214#1 GTTGAATGTTTACCGAAAGTATGTTGTTTGTTTGAATAATTCGATAATCAGAATGGGAAA 478 consensus_10214#2 GTTGAATGTTTACCGAAA---------------------------------AATGGGAAA 260 consensus_10214#0 GTTGAATGTTTACCGAAA---------------------------------AATGGGAAA 332 consensus_10214#3 GATAGATGAAAATACATTAT-------------------------------GATTGGAGC 249 * * *** * * ** *** consensus_10214#1 ATAGAAATAGA--AGCAAT--AGCAGTTCAA-GAAGAATCAGGATCTCAAGGAAATGAAA 533 consensus_10214#2 ATAGAAATAGA--AGCAAT--AGCAGTTCAA-GAAGAATCAGGATCTCAAGGAAATGAAA 315 consensus_10214#0 ATAGAAATAGA--AGCAAT--AGCAGTTCAA-GAAGAATCAGGATCTCAAGGAAATGAAA 387 consensus_10214#3 TTGTACCTCGTCCAGTTATTCACCAGTCAAATGATTCACTGGAGTTACCCACTATTGTTT 309 * * * * ** ** * **** ** ** * * * * * ** consensus_10214#1 GCCTAGAATA-ATCTGGCT----------------------------------------- 551 consensus_10214#2 GCCTAGAATA-ATCTGGCTC---------------------------------------- 334 consensus_10214#0 GCCTAGAATA-ATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAGTAAAGTTCTAAAT 446 consensus_10214#3 CTTCTTTACATGTACGGAT----------------------------------------- 328 * * * ** * consensus_10214#1 ------------------------------------------------------------ consensus_10214#2 ------------------------------------------------------------ consensus_10214#0 TTTAGTAATGAATAAAGAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGC 506 consensus_10214#3 ------------------------------------------------------------ consensus_10214#1 ------------------------------------------------------------ consensus_10214#2 ------------------------------------------------------------ consensus_10214#0 AGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAAGTATCTTGTAACAGGCACTTTGAAGC 566 consensus_10214#3 ------------------------------------------------------------ consensus_10214#1 ----------------- consensus_10214#2 ----------------- consensus_10214#0 TAATCATTTGACGAAAA 583 consensus_10214#3 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||