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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 846 fasta sequence
[CCTCGAGGCCANAATTCGGCACGAGGGAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAACTTCAAAAAAAGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAATCGTATTGTGTAATATTACATGTGCATAGCCTTTTTCTATACATGATCTTAC]
[+] EMBL CD080176 [CCTCGAGGCCANAATTCGGCACGAGGGAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAACTTCAAAAAAAGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTT ]
[-] EMBL CD149440 [ ATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAACTTCAAAAAAAGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAATCGTATTGTGTAATATTACATGCGCACAGCCTTTTTC ]
[-] EMBL CD149338 [ tatnnnAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAACTTCAAAAAAAGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAATCGTATTGTGTAATATTACATGTGCATAGCCTTTTTC ]
[-] EMBL CD131352 [ AAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAGCTTCAAAAAAGGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAATCGTATTGTGTAATATTACATGTGCATAGCCTTTTTCTATACATGATCTTAC]
[-] EMBL SMT14524 [ AATNCTNCCTGTTTATCANCGNGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAANCGTATTGTGTAATATTACATGTGCATAGCCTTTTTCTATACATGATCTTAC]
consensusID : consensus_10215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 713 fasta sequence
[AAGNCTCTCGGCACGAGGCTATGGGAGGTGGTGTTGAACATGATGATCATGATGATATTACCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTNTAGTAGAGATTTACCANAAGAAATTCATATGTAGTTTACTGGTAGGCAACCT-ACCNTTTATACTGNTGNTAGTCT-ATGAAAATAT]
[+] EMBL CD082255 [AAGNCTCTCGGCACGAGGCTATGGGAGGTGGTGTTGAACATGATGATCATGATGATATTACCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTNTAGTAGAGATTTACCANAAGAAATTCATATGTAGTTTACTGGTAGGCAACCT ACCNTTTATACTGNTGNTAGTCT ATGAAAAT ]
[+] EMBL AI975544 [ cattcgctaCTATGGGAGGTGGTGTTGAACATGATGATCATGATGATATTACCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAA ]
[+] EMBL CD084367 [ gCCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATACAGCAAC ]
[-] EMBL CD147654 [ ATACAGAGAGCTCAAACCAAGTTTTAAATACCAATTTACAAGCATCGTTTCGTCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGA ]
[-] EMBL CD075862 [ AATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGGCAACCTAACCTTTAATACTGTTGTTAGTCTAATGAAAATAT]
[+] EMBL CD077596 [ CCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGACAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATA ]
[-] EMBL CD147727 [ TCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGA ]
consensusID : consensus_10215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 508 fasta sequence
[TCATAGGGACCGGAGGAACATTTCAAATGTTTGTTTAGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCCGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATTGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATG]
[-] EMBL CD097354 [TCATAGGGACCGGAGGAACATTTCAAATGTTTGTTTAGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCCGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATTGTTTACTATGGGAAAAACGTTATGG ]
[+] EMBL CD199517 [ ACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10215#0 ----------------------------------------------CCTCGAGGCCANAA 14
consensus_10215#1 AAGNCTCTCGGCACGAGGCTATGGGAGGTGGTGTTGAACATGATGATCATGATGATATTA 60
consensus_10215#2 ------------------------------------------------------------
consensus_10215#0 TTCGGCACGAG----GGAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTA 70
consensus_10215#1 CCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTA 120
consensus_10215#2 ------------------------------------------------------------
consensus_10215#0 TTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTC 130
consensus_10215#1 TTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTC 180
consensus_10215#2 ------------------------------------------------------------
consensus_10215#0 GCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTT 190
consensus_10215#1 GCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTT 240
consensus_10215#2 ------------------------------------------------------------
consensus_10215#0 TAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGG 250
consensus_10215#1 TAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGG 300
consensus_10215#2 ------------TCATAGGGACCGGAGGAACATTTCA--AATGTTT---GTTTAGGTTGG 43
* * * ** * * *** *** * * ******
consensus_10215#0 TGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACA 310
consensus_10215#1 TGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACA 360
consensus_10215#2 TGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACA 103
************************************************************
consensus_10215#0 AGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATG 370
consensus_10215#1 AGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATG 420
consensus_10215#2 AGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATG 163
************************************************************
consensus_10215#0 CAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATG 430
consensus_10215#1 CAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATG 480
consensus_10215#2 CAGCCGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATG 223
**** *******************************************************
consensus_10215#0 CTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAA 490
consensus_10215#1 CTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAA 540
consensus_10215#2 CTTTTATGAAACAGAAACATTGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAA 283
******************** ***************************************
consensus_10215#0 CCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATT 550
consensus_10215#1 CCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATT 600
consensus_10215#2 CCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATT 343
************************************************************
consensus_10215#0 TCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGT 610
consensus_10215#1 TCGTTACGAAAATGCGAGAACTTGGCTNTAGTAGAGATTTACCANAAGAAATTCATATGT 660
consensus_10215#2 TCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGT 403
*************************** **************** ***************
consensus_10215#0 AGTTTACTGGTAGCT--CCAAGTGTTT--ACCGAACTTCAAAAAAAGATGGACATGATAT 666
consensus_10215#1 AGTTTACTGGTAGGCAACCTACCNTTT--ATACTGNTGNTAGTCTATGAAAATAT----- 713
consensus_10215#2 AGTTTACTGGTAGCT--CCAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTAT 461
************* ** * * * * * *
consensus_10215#0 AATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTG 726
consensus_10215#1 ------------------------------------------------------------
consensus_10215#2 GTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATG------------- 508
consensus_10215#0 AATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGA 786
consensus_10215#1 ------------------------------------------------------------
consensus_10215#2 ------------------------------------------------------------
consensus_10215#0 CTTTCTAATCGTATTGTGTAATATTACATGTGCATAGCCTTTTTCTATACATGATCTTAC 846
consensus_10215#1 ------------------------------------------------------------
consensus_10215#2 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||