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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1157 fasta sequence
[CTCGNAGGCCANNATTCGGCACGAGGTTTAATAATGAACGATACGTTTGAGAGGCGACTCAGACAAGTCTCTGTAAAAAGACGACTAG-GAAAGACTAATTCTTCAGCAATCAACGGT-CGAAATGATCTCAGAAACAAGCTTAATCTTACCGTACGAACACCTGATGCACGGACGTTGCTTCGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACGATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATCCACGAAAACCACGTCCAACATCCTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCTCTTCCTAATCCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCGTTTAATGAAGTTCCAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAATACAAGGTTTCCGTGTGGAAATCCGTAACCTTCAACCGTCCGTTACGCTAGATGATGTATTCGAGCTATTTAGCAGCGTTGGAAGTTTACGTCTGTGTACTGTTACACGGCCTGGCCAGGCAGAAGTAATTTATAATCATTCTTCAGATGCGCTTGAAGCAATTGAACGTTATAATGGTCGTGAACTAGATGGTCGTCCAATGCGTGTAAGCCTTACTACACCAGTTAGTGATTTACCCAGTGAACGTGACACTTCTGCTCGCATGGCCTCAAGACTTGGACCAAATTATGGAAGAAAGCAAACTGAAACACAAGCTAAACAAGTTATTCGTGAGTCTCTGAACAAATCAGGCATTCCGGTCGAAGTAGACGCAGATGTTGTCCGCAAAGCTTTGTTCAACGTTAGTTCATCTGGTAGCGTTCAATCTAGAAGACCTGTTGATTTCAGCGTTAGTTTACGTTAAAAAGATATACCAGAAGTTAGGTGTTTTACATTACGTTCTACTCACCGCTCATTTTTCAGTCATTAATGTGTGTATAACCAAAAAGTGTATGTTACTTTGTTGATTTGTTAATTTATAAATATAACACTGGATTTTCGGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD080313 [CTCGNAGGCCANNATTCGGCACGAGGTTTAATAATGAACGATACGTTTGAGAGGCGACTCAGACAAGTCTCTGTAAAAAGACGACTAG GAAAGACTAATTCTTCAGCAATCAACGGT CGAAATGATCTCAGAAACAAGCTTAATCTTACCGTACGAACACCTGATGCACGGACGTTGCTTCGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACGATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATCCACGAAAACCACGTCCAACATCCTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCTCTTCCTAATCCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCGTTTAATGAAGTTCCAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAATACAAGGTTTCCGTGTGGAAATCCGTAACCTTCAACCGTCCGTTACGCTAGATGATGTATTCGAGCTATTTAGCAGCGTTGGAAGTTTACGTCTGTGTACTGTTACACGGCCTGGCCAGGCAGAAGTAATTTAT ]
[+] EMBL CD141642 [ CAAGTCTCTGTAAAAAGACGACTAG GAAAGACTAATTCTTCAGCAATCAACGGT CGAAATGATCTCAGAAACAAGCTTAATCTTACCGTACGAACACCTGATGCACGGATGTTGCTTCGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACGATTAAAAATGAACTTTTTGGAGGTCAAAT AACAATCTACGAAAT CACGAAAA CACGTCC ACATCC TTCGTCCA GTATT NTGATCT CTGAG TTA CGTTGC ]
[-] EMBL CD141239 [ AAGTCTCTGTAAAAAGACGCCTAG GAAAGACTAAATCTTCAGCAATCAACGGT CGAAATGATCTCAGAAACAAGCCTAATCTTTCCGTACGAACACCTGATGCACGGGCGGTGCTTCGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACGATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATCCACGAAAACCACGTCCAACATCCTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCT ]
[-] EMBL BG931677 [ TCTCTGTAAAAAGACGACTAG GAAAGACTAATTCTTCAGCAATCAACGGT CGAAATGATCTCAGAAACAAGCTTAATCTTACTGTACGAACACCTGATGCACGGACGTTGCTTCGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACGATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATTCACGAc ]
[+] EMBL CD112984 [ TAAAAAGACGACTAG GAAAGACTAATTCTTCAGCAATCAACGGT CGAAATGATCTCAGAAACAAGCTTAATCTTACTGTACGAACACCTGATGCACGGACGTTGCTTCGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTTCCGTAAGAACGATTAAAAATGAACTCTTTGGAGGTCAAATAAACAATCTACGAAATTCACGAAAACCACGTCCAACATCTTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCTCTTCCTAATCCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCGTTTAATGAAGTTCCAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAAT ]
[+] EMBL CD080324 [ ACGACTAGTGAAAGACTAATTCTTCAGCAATCAACGGTACGAAATGATCTCACAAACAAGCTTAATCTTACCGTACGAACACCTGATGCACGGACGTTGCTTCGCAACCGTACTCGTAAACGTAACTCGACATTTCGCGACGCTATAAATGTATTGAGGTCTAGGAATATACCTCATCCACTTCGAAATCCCATGGTCCCGGTCTTCATTCCCGTTAGAACGATTAATAATGAACTTTTTGGAGGTCAAATTATCAATCTACGAAATCCACGAAAACCACGTCCAACATCCTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGACTATTCCTAATCCTCTTGATTTTCTCAATAACCATACACCCCCTTCTGGGTTATTAGCTAACT ]
[+] EMBL CD098376 [ CGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACGATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATCCACGAAAACCACGTCCAACATCCTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCTCTTCCTAATCCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCGTTTAATGAAGTTCCAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAATACAAGGTTTCCGTGTGGAAATCCGTAACCTTCAACCGTCCGTTACGCTAGATGATGTATTCGAGCTATTTAGCAGCGTTGGAAGTTTACGTCTGTGTACTGTTACACGGCCTGGCCAGGCAGAAGTAATTTATAATCATTCTTCAGATG ]
[+] EMBL AI977127 [ TGGAGGGCAAATAAACAATCTACGAAATCCACGAAAACCACGTCCAACATCCTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCAGTGCCTCTTACTAATCCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCGATTAATGAAGATCCAGGGTCTGCTTGTTCA ]
[+] EMBL CD119442 [ CAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAATACAAGGTTTCCGTGTGGAAATCCGTAACCTTCAACCGTCCGTTACGCTAGATGATGTATTCGAGCTATTTAGCAGCGTTGGAAGTTTACGTC ]
[-] EMBL CD074233 [ CAGGGCNTAAGATTAGTCCAATACAAGGTTTCCGTGTGGAAATCCGTAACCTTCAACCGTCCGTTACGCTAGATGATGTATTCGAGCTATTTAGCAGCGTTGGAAGTTTACGTCTGTGTACTGTTACACGGCCTGGCCAGGCAGAAGTAATTTATAATCATTCTTCAGATGCGCTTGAAGCAATTGAACGTTATAATGGTCGTGAACTAGATGGTCGTCCAATGCGTGTAAGCCTTACTACACCAGTTAGTGATTTACCCAGTGAACGTGACACTTCTGCTCGCATGGCCTCAAGACTTGGACCAAATTATGGAAGAAAGCAAACTGAAACACAAGCTAAACAAGTTATTCGTGAGTCTCTGAACAAATCAGGCATTCCGGTCGAAGTAGACGCAGATGTTGTCCGCAAAGCTTTGTTCAACGTTAGTTCATCTGGTAGCGTTCAATCTAGAAGACCTGTTGATTTCAGCGTTAGTTTACGTTAAAAAGATATACCAGAAGTTAGGTGTTTTACATTACGTTCTACTCACCGCTCATTTTTCAGTCATTAATGTGTGTATAACCAAAAAGTGTATGTTACTTTGTTGATTTGTTAATTTATAAATATAACACTGGAT ]
[-] EMBL CD199991 [ GATGATGTATTCGAGCTATTTAGCAGCGTTGGAAGTTTACGTCTGTGTACTGTTACACGGCCTGGCCAGGCAGAAGTAATTTATAATCATTCTTCAGATGCGCTTGAAGCAATTGAACGTTATAATGGT ]
[-] EMBL AI394753 [ ggTGATGTATTCGAGCTATTTAGCAGCGTTGGAAGTTTACGTCTGTGTACTGTTACACGACCTGGCCAGGCAGAAGTAATTTATAATCATTCTTCAGATGCGCTTGAAGCAATTGAACGTTATAATGGTCGTGAACTAGATGGTCGTCCAATGCGTGTAAGCCTTACTACACCAGTTAGTGATTTACCCAGTGAACGTGACATTTCTGCTCGCATGGCCTCAAGACTTGGACCAAATTATGGAAGAAAGCAAACTGAAACACAAGCTAAACAAGTTATTCGTGAGTCTCTGAACAAATCAGGCATTCCGGTCGAAGTAGACGCAGATGTTGTCCGCAAAGCTTTGTTCAACGTTAGTTCATTTGGTAGCGTTCAATTTAGAAGACCTGTTGATTTCAGCGTTAGTTTACGTTAAAAAGATATACCAGAAGTTAGGTGTTTTACATTACGTTTTACTCACCGCTCATTTTTCAGTCATTAATGTGTGTATAACCAAAAAGTGTATGTTACTTTGTTGATTTGTTAATTTATAAATATAACACTGGATTTTCGGAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395528 [ TTNGTGATTTACCCAGTGAACGTGACACTTCTGCTCGCATGGCCTCAAGACTTGGACCAAATTATGGAAGAAAGCAAACTGAAACACAAGCTAAACAAGTTATTCGTGAGTCTCTGAACAAATCAGGCATTCCGGTCGAAGTAGACGCAGATGTTGTCCGCAAAGCTTTGTTCAACGTTAGTTCATCTGGTAGCGTTCAATCTAGAAGACCTGTTGATTTCAGCGTTAGTTTACGTTAAAAAGATATACCAGAAGTTAGGTGTTTTACATTACGTTCTACTCACCGCTCATTTTTCAGTCATTAATGTGTGTATAACCAAAAAGTGTATGTTACTTTGTTGATTTGTTAATTTATAAATATAACACTGGATTTTCGAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_10219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[AATTTGGCCCTCGAGGCAGATCGGCACGAGGACGGTCGAAATGATCTCAGAAACAAGCTTAATCTTACTGTACGAACACCTGATGCACGGACGTTGCTTCGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACGATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATTCACGAAAACCACGTCCAACATCTTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCTCTTCCTAATCCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCGTTTAATGAAGTTCCAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAAT]
[+] EMBL CD084008 [AATTTGGCCCTCGAGGCAGATCGGCACGAGGACGGTCGAAATGATCTCAGAAACAAGCTTAATCTTACTGTACGAACACCTGATGCACGGACGTTGCTTCGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCGAGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACGATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATTCACGAAAACCACGTCCAACATCTTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCTCTTCCTAATCCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCGTTTAATGAAGTTCCAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10219#0 CTCGNAGGCCANNATTCGGCACGAGGTTTAATAATGAACGATACGTTTGAGAGGCGACTC 60
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 AGACAAGTCTCTGTAAAAAGACGACTAGGAAAGACTAATTCTTCAGCAATCAACGGTCGA 120
consensus_10219#1 -----------------AATTTGGCCCTCGAGG--CAGATCGGCACGAG--GACGGTCGA 39
** * * * * * ** ** * ********
consensus_10219#0 AATGATCTCAGAAACAAGCTTAATCTTACCGTACGAACACCTGATGCACGGACGTTGCTT 180
consensus_10219#1 AATGATCTCAGAAACAAGCTTAATCTTACTGTACGAACACCTGATGCACGGACGTTGCTT 99
***************************** ******************************
consensus_10219#0 CGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCG 240
consensus_10219#1 CGCAACCGTACTCGTCAACGTAACTCGACATTTCGCGACGCTAGAAATGTCTTGAGGTCG 159
************************************************************
consensus_10219#0 AGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACG 300
consensus_10219#1 AGGAATATACCTCAGCCACGTCGAAATCCCAGGGTCCCGTTCTTCATTCCCGTAAGAACG 219
************************************************************
consensus_10219#0 ATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATCCACGAAAACCACGT 360
consensus_10219#1 ATTAAAAATGAACTTTTTGGAGGTCAAATAAACAATCTACGAAATTCACGAAAACCACGT 279
********************************************* **************
consensus_10219#0 CCAACATCCTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCTCTTCCTAAT 420
consensus_10219#1 CCAACATCTTTTCGTCCAGGTATTCCTGATCTGCTGAGCTTACCGTTGCCTCTTCCTAAT 339
******** ***************************************************
consensus_10219#0 CCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCG 480
consensus_10219#1 CCTCTTGATTTTCTCAATAACCCTACACCCCCTTCTGGGTTATTTGCTAACTTATTACCG 399
************************************************************
consensus_10219#0 TTTAATGAAGTTCCAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAATACAAGGT 540
consensus_10219#1 TTTAATGAAGTTCCAGTGTCTGCTTCTTCATCAGGGCCTAAGATTAGTCCAAT------- 452
*****************************************************
consensus_10219#0 TTCCGTGTGGAAATCCGTAACCTTCAACCGTCCGTTACGCTAGATGATGTATTCGAGCTA 600
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 TTTAGCAGCGTTGGAAGTTTACGTCTGTGTACTGTTACACGGCCTGGCCAGGCAGAAGTA 660
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 ATTTATAATCATTCTTCAGATGCGCTTGAAGCAATTGAACGTTATAATGGTCGTGAACTA 720
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 GATGGTCGTCCAATGCGTGTAAGCCTTACTACACCAGTTAGTGATTTACCCAGTGAACGT 780
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 GACACTTCTGCTCGCATGGCCTCAAGACTTGGACCAAATTATGGAAGAAAGCAAACTGAA 840
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 ACACAAGCTAAACAAGTTATTCGTGAGTCTCTGAACAAATCAGGCATTCCGGTCGAAGTA 900
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 GACGCAGATGTTGTCCGCAAAGCTTTGTTCAACGTTAGTTCATCTGGTAGCGTTCAATCT 960
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 AGAAGACCTGTTGATTTCAGCGTTAGTTTACGTTAAAAAGATATACCAGAAGTTAGGTGT 1020
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 TTTACATTACGTTCTACTCACCGCTCATTTTTCAGTCATTAATGTGTGTATAACCAAAAA 1080
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 GTGTATGTTACTTTGTTGATTTGTTAATTTATAAATATAACACTGGATTTTCGGAAAAAA 1140
consensus_10219#1 ------------------------------------------------------------
consensus_10219#0 AAAAAAAAAAAAAAAAA 1157
consensus_10219#1 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||