|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 782 fasta sequence
[TCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGCACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCACGAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCATT]
[+] EMBL CD136362 [TCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTT ]
[-] EMBL CD136184 [ CCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC ]
[-] EMBL CD136275 [ TAGAGT GTTAT GGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC ]
[-] EMBL CD145896 [ GTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGCAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATATACAACCCAGTTCTCCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCCATGCTCTGTTCGG ]
[-] EMBL CD136190 [ AAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAGGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC ]
[-] EMBL CD136226 [ AAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC ]
[+] EMBL CD170718 [ GATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTC ]
[+] EMBL CD136386 [ gcggTTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACCTACATGTT ]
[-] EMBL CD135809 [ acaatatcgTGTTCGGTACACCCTTTAAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGACGCTACATCAATTG ]
[-] EMBL CD134587 [ TGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGCACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCACGAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAA ]
[+] EMBL CD120262 [ TGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCAT ]
[-] EMBL CD120309 [ GATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAGGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGGTACATCTTGTTCATATTGGTTAGCCATT]
[-] EMBL CD120227 [ GATTAAAAACATAAACGAACCAAACATAAACATATGTGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAGCACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCATT]
consensusID : consensus_10229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACACCCAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCGGGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAATCGACTAATGGAGAAATGAATTCATTATAGTCCCTAAATACCAGAGGGGGGCCGGTACCAATCCCCTATGTAGTCGTATAAATTVCTGGCCGTCGTTAACCGTCTACTGGAAACCTGGCTAACCAATTAATCGTTGAACCTTCCTTTCGAGTGTAATAAGAGGCCCGACGTCCTTACAAGTG]
[+] EMBL AI764919 [CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACACCCAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCGGGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAATCGACTAATGGAGAAATGAATTCATTATAGTCCCTAAATACCAGAGGGGGGCCGGTACCAATCCCCTATGTAGTCGTATAAATTVCTGGCCGTCGTTAACCGTCTACTGGAAACCTGGCTAACCAATTAATCGTTGAACCTTCCTTTCGAGTGTAATAAGAGGCCCGACGTCCTTACAAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10229#0 ----------------------------TCCTCATCTAGAGTGGTTATGGGTTTGTAAAT 32
consensus_10229#1 CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAAT 60
********************************
consensus_10229#0 CGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAA 92
consensus_10229#1 CGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAA 120
************************************************************
consensus_10229#0 TGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACC 152
consensus_10229#1 TGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACA-CC 179
****************** ******** ** * ******* ************ **
consensus_10229#0 CAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGT-A 211
consensus_10229#1 CAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCG 239
********** * ** ** * * **** * * ** * ** * * *
consensus_10229#0 TTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTC 271
consensus_10229#1 GGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAAT---------C 290
** * *** ** * ** * * **** **** ** *
consensus_10229#0 AAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCT 331
consensus_10229#1 GACTAATGGAGAAATGAATTCATTAT-AGTCCCTAAATACCAGAGGGGGGCCGGTACCAA 349
* * * * **** *** * * ** * ** ** * ** * *
consensus_10229#0 TTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTAT 391
consensus_10229#1 TCCC----CTATGTAGT-CGTATAAATTVC--TGGC--CGTCGTTAACCGTCTACTGGAA 400
* ** * * * * *** * *** ** * * * *** * * * *
consensus_10229#0 AGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGC 451
consensus_10229#1 ACCTGGCTAACCAATTAATCGTTGAACCT-TCCTTTCGAGTGTAATAAGAGGCCCGACGT 459
* * * * * ** *** *** * * * * * ** * * * ****** *
consensus_10229#0 ACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCAC 511
consensus_10229#1 CCTTAC---AAGTG---------------------------------------------- 470
* * ** *
consensus_10229#0 GAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACAT 571
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 AAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGG 631
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 GAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGC 691
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 AAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATT 751
consensus_10229#1 ------------------------------------------------------------
consensus_10229#0 AGTTACATCTTGTTCATATTGGTTTGCCATT 782
consensus_10229#1 -------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||