These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1281 fasta sequence [CGAGGCCAAAAATTGCGGCACGAGGTCCAATCAGCGTTTAAAAATGTAAATTTAGCCTTAAATTATATGACAAAAGGTGATTATCAACAGTCAGCTGACTATTCAATGAAAGCTGTTAATTTATTCGAAAGAATCTTATCGGGTAAGTCGTTCTCAGATGTAAAGAATTTGATTAATTCATCGTCTCAACTAGACGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCCCGCCTCTGTTGAGTCTAATGAACATAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCAC-ATCG-GGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAATTAAAAGTATGTGAACAATATAAAATATCAATACCGGATGTATTATCAAGTATACAACATGAACAACAAAGATTCTTGATGGCTATGCAAG] [+] EMBL CD081300 [CGAGGCCAAAAATTGCGGCACGAGGTCCAATCAGCGTTTAAAAATGTAAATTTAGCCTTAAATTATATGACAAAAGGTGATTATCAACAGTCAGCTGACTATTCAATGAAAGCTGTTAATTTATTCGAAAGAATCTTATCGGGTAAGTCGTTCTCAGATGTAAAGAATTTGATTAATTCATCGTCTCAACTAGACGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCCCGCCTCTGTTGAGACTAATGAACATAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCCTTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATA ] [+] EMBL CD154057 [ ctcttCAATCAGCGTTTAAAAATGTAAATTTAGCCTTAAATTATATGACAAAAGGTGATTATCAACAGTCAGCTGACTATTCAATGAAAGCTGTTAATTTATTCGAAAGAATCTTATCGGGTAAGTCGTTCTCAGATGTAAAGAATTTGATTAATTCATCGTCTCAACTAGACGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCCCGCCTCTGTTGAGTCTAATGAACATAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTT ] [+] EMBL AI976318 [ GATGTAAAGAATTTGATTAATTCATCGTCTCAACTAGACGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCCCGCCTCTGTTGAGTCTAATGAACATAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGC ] [-] EMBL CD158479 [ GCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGA ] [-] EMBL CD066265 [ ATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTAAGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCA ] [-] EMBL CD162139 [ AAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATTTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCG ] [-] EMBL CD183167 [ TCGCGTTAATGCATTGATTAAATCTGCATGCNTATCAATGTCAGTTGATCAAGATGTAGCTGCTGNCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGNCCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAATGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAG ] [+] EMBL CD077829 [ GTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCG ] [+] EMBL AI976871 [ TGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCACAATCG GGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAACGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAA ] [+] EMBL AW017108 [ GTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCAC ATCGTGGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAATTAAAAGTATGTGAACAATATAAAA ] [+] EMBL BF936321 [ AAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCACAATCG GGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAAGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACANAATGATTTATCACATTTAAT ] [-] EMBL CD075130 [ ATTNTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCAC ATCGTGGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAATTAAAAGTATGTGAACAATATAAAATATCAATACCGGATGTATTATCAAGTATACAACATGAACAACAAAGATTCTTGATGGCTATGCAAG] [+] EMBL AI977661 [ TTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCAC ATCGTGGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAATTAAAAGTATGTGAACAATATAAAATATCAATACCGGATGTATTATCAAGTATACAACATGAACAACANAAATTCTTGATGGCTATGCAA ] consensusID : consensus_10230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [CCACACGTGAAACCGTAGATCAGACAGACAAGTAACTCCTTATGATCGCGATGAAGTTTCTTCTAATCCAGCTCAAAACAACAATGAAACACTAACTACTAATAGTACTATACGAAATACAATAAAACAAATCAAGTGCAACATTTCAAATTATTTATTCACTAGCCGAACTGAATCAAATCAAATGAAATTAAATTCCAATATGCACATAAATGATACTACTAATAAATCATCTTCTAAATTATCTAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAGTTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGG] [+] EMBL CD061537 [CCACACGTGAAACCGTAGATCAGACAGACAAGTAACTCCTTATGATCGCGATGAAGTTTCTTCTAATCCAGCTCAAAACAACAATGAAACACTAACTACTAATAGTACTATACGAAATACAATAAAACAAATCAAGTGCAACATTTCAAATTATTTATTCACTAGCCGAACTGAATCAAATCAAATGAAATTAAATTCCAATATGCACATAAATGATACTACTAATAAATCATCTTCTAAATTATCTAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAGTTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10230#0 CGAGGCCAAAAATTGCGGCACGAGGTCCAATCAGCGTTTAAAAATGTAAATTTAGCCTTA 60 consensus_10230#1 ---------------CCACACGTGA---AACCGTAGATCAGACAGACAAGTAACTCCTTA 42 * **** * ** * * * * * * ** * ***** consensus_10230#0 AATTATATGACAAAAGGTGATT--ATCAACAGTCAGCTGACTATTCAATGAAAGCTGTTA 118 consensus_10230#1 TGAT-CGCGATGAAGTTTCTTCTAATCCAGCTCAAAACAACAATGAAACACTAACTACTA 101 * ** ** * * *** * * ** ** ** * ** ** consensus_10230#0 ATT-TATTCGAAAGAATCTTATCGGGTAAGTCGTTCTCAGATGTAAAGAATTTGATTAAT 177 consensus_10230#1 ATAGTACTATACGAAATACAATAAAACAAATCAAGTGCA-ACATTTCAAATT--ATTTAT 158 ** ** * * *** ** ** ** ** * * **** *** ** consensus_10230#0 TCATCGTCTCAACTAGA-CGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCC 236 consensus_10230#1 TCACTAGCCGAACTGAATCAAATCAAATG--AAATTAAATTCCAATATGCACATAAATGA 216 *** * **** * * * ***** ** ** *** ** * *** consensus_10230#0 CGCCTCTGTTGAGTC------TAATGAACATAATCAAAATGAAAATGAGTTGGATGACAA 290 consensus_10230#1 TACTACTAATAAATCATCTTCTAAATTATCTAATCAAAATGAAAATGAGTTGGATGACAA 276 * ** * * ** *** * ****************************** consensus_10230#0 AGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAAC 350 consensus_10230#1 AGAAAGCAATAGCATCACCACAAGTTCAAATAATACTGACACCCTCAATAAAAATAAAAC 336 *********************** ************************************ consensus_10230#0 AAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGC 410 consensus_10230#1 AAATGAATCTATTCAAGTGG---------------------------------------- 356 ******************* consensus_10230#0 TACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGG 470 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 TATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATG 530 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 CTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACA 590 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 AAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGC 650 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 TGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATT 710 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 TTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGA 770 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 TATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAA 830 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 TTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGA 890 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 AAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGC 950 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 ACATCGGGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTT 1010 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 ATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTA 1070 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 TCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAA 1130 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 GCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAA 1190 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 TTAAAAGTATGTGAACAATATAAAATATCAATACCGGATGTATTATCAAGTATACAACAT 1250 consensus_10230#1 ------------------------------------------------------------ consensus_10230#0 GAACAACAAAGATTCTTGATGGCTATGCAAG 1281 consensus_10230#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||