These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 849 fasta sequence [TAAGTGGCTACTTGACTCCCACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT-GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAATGTTAAATTACATAAAAAAAAAAAAAAAAAAAACTCGTTTGAGCTTGGATAGTTGTCTCACAACGGCTTCAAGTGGTCCAACTCTAACTTTTTCTAATCAGTGCTTGATTACTGATCCAGTTGATCTAACACAAACAGTTCAGTGTGAAAATGGACAAATTGGTTGTATGTTCACTGTTGGATTGGTCGAACTAATCGGTTTTCGTGATCTCTAAACTGTTTGAAATTACATAAATTATTCACTCTTATGATATTTTTTTAAAAAAAAGTTTCCCTTGATCTGTTTATTTATCACGCAGTCAGCCTGTTTTACCTACGCGTGTATGAGAGAGATATATAGAGGTCGTTTTTGTCTCCAATTGGTTATACG] [+] EMBL CD111103 [TAAGTGGCTACTTGACTCCCACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGCTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAA ] [-] EMBL CD136527 [ CACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAG ] [+] EMBL CD146011 [ CATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCT ] [+] EMBL AI976848 [ GCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAATGT ] [+] EMBL AA999409 [ TTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTTGGGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATA ] [+] EMBL CD145949 [ CTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAACTGGCT ] [+] EMBL AW017430 [ TGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAATT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTNTAATAAATGT ] [+] EMBL CD145907 [ TGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTACGCCAAAGGATATCCAATTGGCT ] [+] EMBL CD145886 [ AAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCT ] [+] EMBL CD145906 [ CTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCT ] [-] EMBL CD192463 [ GCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTCGGT ] [-] EMBL CD139065 [ GCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGT ] [+] EMBL AI739734 [ TACAATTATGCCANAGGATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAATGTTAAATTACATAAAAAAAAAAAAAAAAAAAACTCGTTTGAGCTTGGATAGTTGTCTCACAACGGCTTCAAGTGGTCCAACTCTAACTTTTTCTAATCAGTGCTTGATTACTGATCCAGTTGATCTAACACAAACAGTTCAGTGTGAAAATGGACAAATTGGTTGTATGTTCACTGTTGGATTGGTCGAACTAATCGGTTTTCGTGATCTCTAAACTGTTTGAAATTACATAAATTATTCACTCTTATGATATTTTTTTAAAAAAAAGTTTCCCTTGATCTGTTTATTTATCACGCAGTCAGCCTGTTTTACCTACGCGTGTATGAGAGAGATATATAGAGGTCGTTTTTGTCTCCAATTGGTTATACG] consensusID : consensus_10231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence [TTTTTTTTTTTTTTTTGATTGGCGTTTTGGTTTGGACTAATGGCTACGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAACC] [+] EMBL AI395828 [TTTTTTTTTTTTTTTTGATTGGCGTTTTGGTTTGGACTAATGGCTACGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10231#0 TAAGTGGCTACTTGACTCCCACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGG 60 consensus_10231#1 ------------TTTTTTTTTTTTTTTTGATTGGCGTTTTGGTTTGGACTAATGGCTACG 48 * * ************************ ********* * consensus_10231#0 ACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACC 120 consensus_10231#1 ACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACC 108 ************************************************************ consensus_10231#0 AAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGT 180 consensus_10231#1 AAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAACC------------- 155 ******************************************** ** consensus_10231#0 CCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATA 240 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 CGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTA 300 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 CGTTTTCAAAGCGCTGCAGTTGGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGT 360 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 CTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAG 420 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 GATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAAT 480 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 GTTAAATTACATAAAAAAAAAAAAAAAAAAAACTCGTTTGAGCTTGGATAGTTGTCTCAC 540 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 AACGGCTTCAAGTGGTCCAACTCTAACTTTTTCTAATCAGTGCTTGATTACTGATCCAGT 600 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 TGATCTAACACAAACAGTTCAGTGTGAAAATGGACAAATTGGTTGTATGTTCACTGTTGG 660 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 ATTGGTCGAACTAATCGGTTTTCGTGATCTCTAAACTGTTTGAAATTACATAAATTATTC 720 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 ACTCTTATGATATTTTTTTAAAAAAAAGTTTCCCTTGATCTGTTTATTTATCACGCAGTC 780 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 AGCCTGTTTTACCTACGCGTGTATGAGAGAGATATATAGAGGTCGTTTTTGTCTCCAATT 840 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 GGTTATACG 849 consensus_10231#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||