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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 802 fasta sequence
[CTTCCCATTGGACCCATTAGTGAGGCACCAAGCCCCATGCTTCTCGTAGGGGAAGTTGGTGCACTTGGATAAGCACCACGTCCTCGACCTACAGATCCAGGAATGTGATTAGCTGCAGTTGTGGCTGTCTGAGAACTAGAGAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGGTTGAATAACTATGCCCCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCAAAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA]
[+] EMBL CD201524 [CTTCCCATTGGACCCATTAGTGAGGCACCAAGCCCCATGCTTCTCGTAGGGGAAGTTGGTGCACTTGGATAAGCACCACGTCCTCGACCTACAGATCCAGGAATGTGATTAGCTGCAGTTGTGGCTGTCTGAGAACTAGAGAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGGTTGAATAACTATGCCCCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCAAAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACA ]
[-] EMBL CD179789 [ AGCGCCACGTCCTCGACATTCAGATCCAGGAATGTGATTAGCTGCAGTTGTGTCTGTCTGAGAACTAGAGAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTGTGCAGGACCTGTAG ]
[+] EMBL CD091803 [ CGCAAACTGATTGGTGTAAGTATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGCTACACCCTGTATGAATACTTTGCACGCGATATGCAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ]
[+] EMBL CD091808 [ CGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ]
[+] EMBL CD091838 [ CGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ]
[+] EMBL CD091843 [ CGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ]
[+] EMBL CD091895 [ CGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGACTCTTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ]
[-] EMBL CD091868 [ GCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA]
[-] EMBL CD091888 [ GCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA]
[-] EMBL CD091815 [ GCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAACTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA]
[-] EMBL CD091866 [ GCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAGTAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA]
consensusID : consensus_10232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[CCAATGGGAAGTTTAACCGGTCAGATATCAAACACACTCATGCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCAAAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCGTCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGAC]
[-] EMBL CD087654 [CCAATGGGAAGTTTAACCGGTCAGATATCAAACACACTCATGCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCAAAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCGTCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGAC]
consensusID : consensus_10232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[ACTCAAAATCTATCCCACAGGTTCAGTTAAATTTACTAATTAAATATGTGTAAAGGTTAACACTTAATTCTCGTTTCAGCTTAATCGTTTCATTATCGACGTGTACTCTTTCCACATTCAACTGTAAAGTGTAACAACTTGAAGTGAAATAAAACTTTGCCAGGTCTATTAATAATAATCCCCTTGAAATAAAACTTCTCGAGTAAAAGTCAACATTTTATTTCGTTTTAAATTAGATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAA]
[+] EMBL CD165114 [ACTCAAAATCTATCCCACAGGTTCAGTTAAATTTACTAATTAAATATGTGTAAAGGTTAACACTTAATTCTCGTTTCAGCTTAATCGTTTCATTATCGACGTGTACTCTTTCCACATTCAACTGTAAAGTGTAACAACTTGAAGTGAAATAAAACTTTGCCAGGTCTATTAATAATAATCCCCTTGAAATAAAACTTCTCGAGTAAAAGTCAACATTTTATTTCGTTTTAAATTAGATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAA]
consensusID : consensus_10232#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence
[GAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGTTTGAATAACTATGCCCTGTAGTTTGAATATTAGAGCTTTGCTGCTGATACTGTTGATGGGATTGTCCA]
[-] EMBL CD095538 [GAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGTTTGAATAACTATGCCCTGTAGTTTGAATATTAGAGCTTTGCTGCTGATACTGTTGATGGGATTGTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10232#0 CTTCCCATTGGACCCATTAGTGAGGCACCAAGCCCCATGCTTCTCGTAGGGGAAGTTGGT 60
consensus_10232#1 ------------------------------------------------------------
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 ------------------------------------------------------------
consensus_10232#0 GCACTTGGATAAGCACCACGTCCTCGACCTACAGATCCAGGAATGTGATTAGCTGCAGTT 120
consensus_10232#1 ------------------------------------------------------------
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 ------------------------------------------------------------
consensus_10232#0 GTGGCTGTCTGAGAACTAGAGAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTC 180
consensus_10232#1 ------------------------------------------------------------
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 ------------------------------------------------------------
consensus_10232#0 ATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGGT-TGAATAACTATG 239
consensus_10232#1 ------------------CCAATGGG---AAGTTTAACCGGTCAGATATCAAACACACTC 39
consensus_10232#3 --------------------------------------------------GAAC-TGTTC 9
consensus_10232#2 ------------------------------------------------------------
consensus_10232#0 CCCCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCA 299
consensus_10232#1 ATGCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCA 99
consensus_10232#3 AGCCATGGTA--GGGGCTGTAGA-TCCGTACCTCATATCATAGTTTGCAGGACCTGTAGA 66
consensus_10232#2 ACTCAAAATCT--ATCCCACAGGTTCAGTTAAATTTACTA-ATT---AAATATGTGTAAA 54
* * * * ** * * * * * * * *
consensus_10232#0 AAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATAT 359
consensus_10232#1 AAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATAT 159
consensus_10232#3 ACTAAAATCTTGGGGTTGGTTTGAATAACT-ATGCCCTGTAGTTTGAATATTAGAGCTTT 125
consensus_10232#2 GGTTAACACTTAATTCTCGTTTCAGC--TTAATCGTTTCATTATCGAC--GTGTACTCTT 110
** * * ** * ** ** * * *
consensus_10232#0 TTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCA 419
consensus_10232#1 TTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCA 219
consensus_10232#3 GCTGCTGATAC--TGTTGATGGGA--TTGTCCA--------------------------- 154
consensus_10232#2 TCCACATTCAA----CTGTAAAGTG--TAACAACTTGAAGTGAAATAAAACT--TTGCCA 162
* ** * * *
consensus_10232#0 GAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAA 479
consensus_10232#1 GAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCGTCGTTAGCATCTATCCTGATCAA 279
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 GGTCTATTAATAATAATCCCCTTGAAATAAAACTTCTCGAGTAAAAGTCAACAT--TTTA 220
consensus_10232#0 ATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCA 539
consensus_10232#1 ATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCA 339
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 TTTCGTTTTAAATT----AGATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCA 276
consensus_10232#0 AGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCC 599
consensus_10232#1 AGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGAC-------------------- 379
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 AGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCC 336
consensus_10232#0 TGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCAT 659
consensus_10232#1 ------------------------------------------------------------
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 TGTATGAATACTTTGCACGCGATATACAATATGAA------------------------- 371
consensus_10232#0 TTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTAT 719
consensus_10232#1 ------------------------------------------------------------
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 ------------------------------------------------------------
consensus_10232#0 CATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGA 779
consensus_10232#1 ------------------------------------------------------------
consensus_10232#3 ------------------------------------------------------------
consensus_10232#2 ------------------------------------------------------------
consensus_10232#0 GTAGGTCATCGTGGCGAGGGCAA 802
consensus_10232#1 -----------------------
consensus_10232#3 -----------------------
consensus_10232#2 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||