These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 423 fasta sequence [NGCATGAACTAAGAAACTAT-GGCACGTCATTAC-TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA-GCGGAAGCA-CTATCTAT-GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAGAAGAAGGTATAAAAATCGCACAAGAACTTGTTGGAAGC] [-] EMBL CD196302 [NGCATGANCTAAG AACTATGGGCACGTCA TACTTTGTTNCCTGCTGTAAAA TACTCAAGAAGAAATGTCTT CATCCCTCAGT GAATGAAAAGTCAG ATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTGACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAAGCA CTATCTAT GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAGAAGAAGGTA ] [-] EMBL CD196338 [tGCATGANCTAAG AACTATGGGCACGTCATTAC TGTTCCCTGCTGT AAATTACTCAGAAAGAAATGTCTTCCATCCCTCAGT GAATGAAAAGTCAG ATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAAGTATCCTA GCGGAAGCA CTATCTAT GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAGAAGAAGGTA ] [+] EMBL CD140265 [ ATGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTATATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAAGCA CTATCTAT GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAGAAGAAGGTATTAAAATCGCACAAG ] [+] EMBL CD196342 [ ATGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTGAAATTACCCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGNTGTGGTGGAGGTATCCTA GCGGAAGCA CTATCTAT GNTGNGAGCAGAAGTTTTGNGCATAGACCTAATAGAAGAAAGTATAA ] [+] EMBL CD140293 [ ATGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGCTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTCCCAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAA ] [+] EMBL CD140269 [ ATGAACTATGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTATAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCGGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAAGCA CTATCTAT GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAGAAGAAGGT ] [+] EMBL CD140280 [ ATGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCT ATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAAGCA CTATCTAT GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAAAAGAAGGT ] [+] EMBL CD196333 [ ATGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGACTATTTACCTATGAAAGGTATAAAGATTTTAGATGTTGGATGTGGTGGAGGTATCCTA GCGGAAGCA TATCTATAGTT GGAGCAGAAGNTTTGGGCATAGA CTAATAGAAG AGGTAT ] [+] EMBL CD140237 [ ATGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCGTTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAAGCA CTATCTAT GTTGGGAGCCGAAGTTT ] [+] EMBL CD140260 [ ATGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAAGCA CT ] [-] EMBL CD140167 [ TGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTGTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAAGCA CTATCTAT GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAGAAGAAGGTA ] [-] EMBL CD140286 [ TGAACTAAGAAACTAT GGCACGTCATTAC TTGTTCCCTGCTGTAAAATTACTCAAGAAGAAATGTCTTCCATCCCTCAGTGGAATGAAAAGTCAGAATTTTTCCAGTATGCTAATCGACGCAACAGAAGACGCTAACTTCAAACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTA GCGGAAGCA CTATCTAT GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAGAAGAAGGTA ] [+] EMBL CD077805 [ gACTTCATACGTTTCGCCCAGCATTGGTGGGACTATGATGGAGATTTACAGCCATTACATACTATGAATCGTTTACGTGTACCATTTATTCAAAATGGTCTTTGTCCTATAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGNATTTAGATGTTGGTTG ] [+] EMBL BE431222 [ AAAATGGTAATAGTCCAAAAACTTTATTATCTACAATGGATTCAGTCTATTTACCTTTGAAAGGTAAAAAGATTTTAGATGTTGGTTGTGGTGGAGGTATCCTAGGCGGAA CACCTATCTAT GTTGGGAGCAGAAGTTTTGGGCATAGACCTAATAGAAGAAGGTATAAAAATCGCAGAAGAACTTGTTGGAAGC] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||