These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 919 fasta sequence [ATGCTACTGGTCGTCGCCAAAAGGAGTAGCGGACATTTTCAAAAGTGCTTGGATTACCTAGTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGATCATTCATCCGTAATGGTTGTGAA-GATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTG-AAAAAAAAGAAGATAATTACTTGGAAAAT] [+] EMBL CD179256 [ATGCTACTGGTCGTCGCCAAAAGGAGTAGCGGACATTTTCAAAAGTGCTTGGATTACCTAGTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTA ] [-] EMBL CD170889 [ CTACTGGTCGTCGCCAAAAGGAGTAGCGGACATTTTCAAAAGTGCTTGGATTACCTAGTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCGTCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGA ] [+] EMBL CD121065 [ GTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTCGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAAAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGC ] [+] EMBL CD121080 [ GTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGGATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGC ] [+] EMBL CD126756 [ TCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTC ] [+] EMBL CD071552 [ GTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGATCATTCATCCGTAATGGTTGTGAA GATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCACTTATTATCAAAATATCCAT ] [-] EMBL CD194955 [ GATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGATCATTCATCCGTAATGGTTGTGAA GATTTTTTAC ] [+] EMBL CD185401 [ TTCATCCGTAATGGTTGTGAA GATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTG AAAAAAAAGAAGATAATTACTTGGAAAA ] [+] EMBL CD185442 [ TTCATCCGTAATGGTTGTGAA GATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTGAAAAAAAAAGAAGATAATTACTTGGAAAA ] [+] EMBL CD133843 [ TCATCCGTAATGGTTGTGAAGGATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTGAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGACATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAGCTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAGAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTG AAAAAAAAGAAGATTATTACTTGGAAAA ] [-] EMBL CD185368 [ gATCAAAACACCCTTGCATATGTTTCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTG AGAAAAAAGAAGATAATTACTTGGAAAAT] consensusID : consensus_10248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence [GAGCTATTGTTTAGTCTGAAATAAAAATTCTGTAGGTGCGTGTGATTTACGACTTTANTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCANAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCTTCCTTTGCNTGNTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACNTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGAAATGGAAATTAGGCAAACGTGAAGCAGAAACTGACAAATTACAAGGTTTACGTTTTTATTTTGCAGTGGAATCAAAAAGTGGACAAACACCTC] [-] EMBL CD151619 [GAGCTATTGTTTAGTCTGAAATAAAAATTCTGTAGGTGCGTGTGATTTACGACTTTANTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCANAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCTTCCTTTGCNTGNTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACNTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGAAATGGAAATTAGGCAAACGTGAAGCAGAAACTGACAAATTACAAGGTTTACGTTTTTATTTTGCAGTGGAATCAAAAAGTGGACAAACACCTC] [-] EMBL CD151693 [ AGCTATGGTNTAGTCTGGAAT AAAATTCTGTAGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTGACTGTTAGTACTGGAGAGGAACTCACAATCCTGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGGTTACTCAAACACAAGTCAGTAGAAGATATGAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGAAATGGAAATTAGGCAAACGTGAAGCAGAAACTGACAAATTACAAGGTTTACGTTTTTATTTTGCAGTGGAATCAAAAAGTGGACAAACACCTC] consensusID : consensus_10248#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [GATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTAT] [+] EMBL CD114719 [GATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10248#0 ATGCTACTGGTCGTCGCCAAAAGGAGTAGCGGACATTTTCAAAAGTGCTTGGATTACCTA 60 consensus_10248#2 ------------------------------------------------------------ consensus_10248#1 ------------------------------------------------------------ consensus_10248#0 GTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGA 120 consensus_10248#2 ------------------------------------------------------------ consensus_10248#1 ---------------------------GAGCTATTGTTTAGTCTGAAATAAAAATTCTGT 33 consensus_10248#0 GGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTG 180 consensus_10248#2 ------------------------------------------------------------ consensus_10248#1 AGGTGCGTGTGATTTACGACTTTANTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTG 93 consensus_10248#0 GAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACG 240 consensus_10248#2 ------------------------------------------------------------ consensus_10248#1 GAGAGGAACTCACAATCACGAATCANAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACG 153 consensus_10248#0 AATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAAC 300 consensus_10248#2 ------------------------------------------------------------ consensus_10248#1 AATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAAC 213 consensus_10248#0 CACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATG 360 consensus_10248#2 ------------------------------------------------------------ consensus_10248#1 CACCAACCCCACCTCTTCCTTTGCNTGNTACTGAATTCGGGAAGGAGGTTGATCGCTATG 273 consensus_10248#0 ATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAAC 420 consensus_10248#2 --------GATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAA-C 51 consensus_10248#1 ATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAAC 333 ************************************************** * consensus_10248#0 CTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGA 480 consensus_10248#2 CTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGA 111 consensus_10248#1 NTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGA 393 *********************************************************** consensus_10248#0 GGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAA 540 consensus_10248#2 GGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAA 171 consensus_10248#1 GGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAA 453 ************************************************************ consensus_10248#0 GGTTTTTTCACAGATCATTCATCCGTAATGGTTGTGAAGATTTTTTACTGGGTCTTGATC 600 consensus_10248#2 GGTTTTTTCACAG----------------------------------------------- 184 consensus_10248#1 GGTTTTTTCACAGGTTACTCAAACACAAGTCAGTAGAAGATA------------------ 495 ************* consensus_10248#0 CACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGT-GATTCTTTCCAATGG 659 consensus_10248#2 -----------------------------------TATGTATGT-GATTCTTTCCAATGG 208 consensus_10248#1 -----------------------------------TAAACATTTTGATTGGCTTCATTCC 520 ** ** * **** * ** * consensus_10248#0 CGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTT-TCGTAAAGATTCAAAAAT 718 consensus_10248#2 CGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTT-TCGTAAAGATTCAAAAAT 267 consensus_10248#1 CGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACA 580 *** ** *** *** ** ****** ** * ** ** * * * ** * consensus_10248#0 GAAG-GGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACA-A 776 consensus_10248#2 GAAG-GGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACA-A 325 consensus_10248#1 GAAATGGAAATTAGGCAAACGTGAAGCAGAAACTGACAAATTACAAGGTTTACGTTTTTA 640 *** ** * * * * * ** * ** **** * * * consensus_10248#0 GTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCA 836 consensus_10248#2 GTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTAT----------- 374 consensus_10248#1 TTTTGCAGTGGA-ATCAAAAAGTGGACAAACACCTC------------------------ 675 * * ** ** ** ** * * ** * * consensus_10248#0 TGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTGAAAAAA 896 consensus_10248#2 ------------------------------------------------------------ consensus_10248#1 ------------------------------------------------------------ consensus_10248#0 AAGAAGATAATTACTTGGAAAAT 919 consensus_10248#2 ----------------------- consensus_10248#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||