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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1031 fasta sequence
[GATACGAGGATGATCTATGAGAGCGTGAACGTCTACGATTTTTCTGTGTTACGCCTTCATTAGTGCTCTTTGTACGAGAAG-TTCCTCGATTGTTGCAACATTGAGAGACATCAGAACCTCCTGATGAAATAGACTTCCTTCGACAACTTGTGGAGTGGTGACGATCCGAATTCTTTCTACGTCTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTGGGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCACTTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTCTGTATGTACAACTGAAGAGTCAAAATCACTATCACTTGAATCCCACGTAGATCTTGCAGTACCTTTGATAACTCTGACGCTATTTGTCTTCCCAGGAGTTAATTGATTTGACGACGAACTAAGATTGCTAGGACGAGTTTCCGACAAACTATGATCTTTACACTGTGACTGATCATCAACCTTCCGCCTTATTTTACGTTTCACATGTGAATGTTCTTTATTACCATGAGGCAATTCGTCGTCAGTACTATTATAAGCGACAAGAGTATTTGAACCAACTTGGTTCTGTTTTTGATCAGAGTACGATGTATGTTTTTCGGAGTAAGATACACAGGCATCTGAGCTGTGTTTAACCGATACAGAGTATTTACTGGAAGGACTTTTATCGACTGGATTACTTGAAGTATAATCCGTAGCATCGAAACTGCTTTTTGACTTTTCGCGCTCGCGAGAATTAGTAGGAGTATGGTAAGCACTAGTATCACTTTTCCTAGATTTTTTGTACGGCGACTTAGTACTTTTATGATCGCAACAATCATCAGGAATACGAGCTGAAAGAGTGCATCTCGTACTCAGCGAAGATTTAGCTATCGCATTGTTCTTGGTA]
[+] EMBL CD186398 [GATACGAGGATGATCTATGAGAGCGTGAACGTCTACGATTTTTCTGTGTTACGCCTTCATTAGTGCTCTTTGTACGAGAAG TTCCTCGATTGTTGCAACATTGAGAGACATCAGAACCTCCTGATGAAATAGACTTCCTTCGACAACTTGTGGAGCGGTGACGATCCGAATTCTTTCTACGTCTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTGGGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCACTTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTCTGTATGTACCACTGAAGAGTCGAAATCACTAT ]
[-] EMBL CD186520 [ ATACGAGGATGATCTATGAGAGCGTGAACGTCTACGATTTTTCTGTGTTACGCCTTCATTAGTGCTCTTTGTACGAGAAG TTCCTCGATTGTTGCAACATTGAGAGACATCAGAACCTCCTGATGAAATAGACTTCCTTCGACAACTTGTGGAGTGGTGACGATCCGAATTCTTTCTACGTCTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTGGGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCACTTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTCTGTATGTACAACTGAAGAGTCAAAATCACTATC ]
[-] EMBL CD131927 [ ATACGAGNATGATCTATGAGAGCGTGAACGTCTACGANTTTTCTGTGTTACGCCTTCATTAGTGCTCTTTGTACGAGAAGTTTCCTCGATTGTTGCACCATTGAGAGACATCAGAACCTCCTGATGAAATAGACTTCCTTCGACAACTTGTGGAGTGGTGACGATCCGAATTCTTTCTACGACTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTGGGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCACTTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTCTGTATGTACAACTGAAGAGTCAAAATCACTATC ]
[-] EMBL CD186483 [ TCTATGAGAGCGTGAACGTCTACGATTTTTCTGTGTTACGCCTTCATTAGTGCTCTTTGTACGAGAAG TTCCTCGATTGTTGCAACATTGAGAGACATCAGAACCTCCTGATGAAATAGACTTCCTTCGACAACTTGTGGAGTGGTGACGATCCGAATTCTATCTACGTCTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTGGGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCACTTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTCTGTATGTACAACTGAAGAGTCAAAATCACTATC ]
[-] EMBL CD186363 [ AACGTCTACGATTTTTCTGTGTTACGCCTTCATTAGTGCTCTTTGTACGAGAAG TTCCTCGATTGTTGCAACATTGAGAGACATCAGAACCTCCTGATGAAATAGACTTCCTTCGACAACTTGTGGAGTGGTGACGATCCGAATTCTTTCTACGTCTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTGGGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCACTTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTCTGTATGTACAACTGAAGAGTCAAAATCACTATC ]
[+] EMBL CD187948 [ AGTGGTGACGATCCGAATTCTTTCTACGTCTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTGGGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCACTTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTGTGTATGTACAACTGAAGAGTCAAAATCACTATCACTTGAATCCCACGTAGATCTTGCAGTACCTTTGATAACTCTGACGCTATTTGTCTTCCCAGGAGTTAATTGATTTGACGACGAACTAATATTGCTAGGA ]
[+] EMBL CD195150 [ GTGGTGACGATCCGAATTCTTTCTACGTCTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTGGGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCACTTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTCTGTATGTACAACTGAAGAGTCAA ]
[+] EMBL CD133734 [ TGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCTCTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTTTCTCTGTATGTACAACTGAAGAGTCAAAATCACTATCACTTGAATCCCACGTAGATCTTGCAGTACCTTTGATAACTCTGACGCTATTTGTCTTCCCAGGAGTTAATTGATTTGACGACGAACTAAGATTGCTAGGACGAGTTTCCGACAAACTATGATCTTTACACTGTGACTGATCATCAACCTTCCGCCTTATTTTACGTTTCACATGTGAATGTTCTTTATTACCATGAGGCAATTCGTCGTCAGTACTATTATAAGCGACAAGAGTATTTGAACCAACTTGGTTCTGTTTTTGATCAGAGTACGATGTATGTTTTTCGGAGTAAGATACACAGGCATCTGAGCTGTGTTTAACCGATACAGAGTATTTACTGGAAGGACTTTTATCGACTGGATTACTTGAAGTATAATCCGTAGCATCGAAACTGCTTTTTGACTTTTCGCGCTCGCGAGAATTAGTAGGA ]
[+] EMBL CD198160 [ TCCCAGGAGTTAATTGATTTGACGACGAACTAAGATTGCTAGGACGAGTTTCCGACAAACTATGATCTTTACACTGTGACTGATCATCAACCTTCCGCCTTATTTTACGTTTCACATGTGAATGTTCTTTATTACCATGAGGCAATTCGTCGTCAGTACTATTATAAGCGACAAGAGTATTTGAACCAACTTGGTTCTGCTTTTGATCAGAGTACGATGTATGTTTTTCGGAGTAAGATACACAGGCATCTGAGCTGTGTTTAACCGATACAGAGTATTTACTGGAAGGACTTTTATCGACTGGATTACTTGAAGTATAATCCGTAGCATCGAAACTGCTTT ]
[-] EMBL CD189371 [ TTTGACGACGAACTAAGATTGCTAGGACGAGTTTCCGACAAACTATGATCTTTACACTGTGACTGATCATCAACCTTCCGCCTTATTTTACGTTTCACATGTGAATGTTCTTTATTACCATGAGGCAATTCGTCGTCAGTACTATTATAAGCGACAAGAGTATTTGAACCAACTTGGTTCTGTTTTTGATCAGAGTACGATGTATGTTTTTCGGAGTAAGATACACAGGCATCTGAGCTGTGTTTAACCGATACAGAGTATTTACTGGAAGGACTTTTATCGACTGGATTACTTGAAGTATAATCCGTAGCATCGAAACTGCTTTTTGACTTTTCGCGCTCGCGAGAATTAGTAGGAGTATGGTAAGCACTAGTATCACTTTTCCTAGATTTTTTGTACGGCGACTTAGTACTTTTATGATCGCAACAATCATCAGGAATACGAGCTGAAAGAGTGCATCTCGTACTCAGCGAAGATTTAGCTATCGCATTGTTCTTGGTA]
[-] EMBL CD150058 [ TTGGTTCTGTTTTTGATCAGAGTACGATGTATGTTTTTCGGAGTAAGATACACAGGCATCTGAGCTGTGTTTAACCGATACAGAGTATTTACTGGAAGGACTTTTATCGACTGGATTACTTGAAGTATAATCCGTAGCATCGAAACTGCTTTTCGACTTTTCGCGCTCGCGAG ]
consensusID : consensus_10255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 581 fasta sequence
[ATGTACATCGACGATGGAAGGACTTTTATCGACTGGATTACTTGAAGTATAATCCGTAGCATCGAAACTGCTTTTTGACTTTTCGCGCTCGCGAGAATTAGTAGGAGTATGGTAAGCACTAGTATCACTTTTCCTAGATTTTTTGTACGGCGACTTAGTACTTTTATGATCGCAACAATCATCAGGAATACGAGCTGAAAGAGTGCATCTCGTACTCAGCGAAGATTTAGCTATCGCATTGTTCTTGGTATGGGACTCCCTTTGGTTAGATTTAAAATCTGTATGTGACGATTCAGATTTACTATCACATGAGTAAGACTCGATCTCGCTTTGATCGTTTGAATTGTTGCGTTCAAAGTGCGTAGTATGGGAGAGTTTATTTGACAAACCAGAACGTTTAACAGCGAATGATAAAGAACTACGTGTTGACTGTGAACCGTAGTCACTTTCCCTATTACGGGACTTTGTGTGTTTCCCGTTATTATCATCTTCAGGGGTCTGTTATTAGCGAGAAANATAAAAAAGAAAGACCGCAGAATAATAGGAACAATCAGATGAACATTTATTTGAATAGATAGCCA]
[+] EMBL CD178250 [ATGTACATCGACGATGGAAGGACTTTTATCGACTGGATTACTTGAAGTATAATCCGTAGCATCGAAACTGCTTTTTGACTTTTCGCGCTCGCGAGAATTAGTAGGAGTATGGTAAGCACTAGTATCACTTTTCCTAGATTTTTTGTACGGCGACTTAGTACTTTTATGATCGCAACAATCATCAGGAATACGAGCTGAAAGAGTGCATCTCGTACTCAGCGAAGATTTAGCTATCGCATTGTTCTTGGTATGGGACTCCCTTTGGTTAGATTTAAAATCTGTATGTGACGATTCAGATTTACTATCACATGAGTAAGACTCGATCTCGCTTTGATCGTTTGAATTGTTGCGTTCAAAGTGCGTAGTATGGGAGAGTTTATTTGACAAACCAGAACGTTTAACAGCGAATGATAAAGAACTACGTGTTGACTGTGAACCGTAGTCACTTTCCCTATTACGGGACTTTGTGTGTTTCCCGTTATTATCATCTTCAGGGGTCTGTTATTAGCGAGAAANATAAAAAAGAAAGACCGCAGAATAATAGGAACAATCAGATGAACATTTATTTGAATAGATAGCCA]
[+] EMBL CD138886 [ GGTAAGCACTAGTATCACTTTTCCTAGATTTTTTGTACGGCGACTTAGTACTTTTATGATCGCAACAATCATCAGGAATACGAGCTGAAAGAGTGCATCTCGTACTCAGCGAAGATTTAGCTATCGCATTGTTCTTGGTATGGGACTCCCTTTGGTTAGATTTAAAATCTGTATGTGACGATTCAGATTTACTATCACATGAGTAAGACTCGATCTCGCTTTGATCGTTTGAATTGTTGCGTTCAAAGTGCGTAGTATGGGAGAGTTTATTTGACAAACCAGAACGTTTAACAGCGAATGATAAAGAACTACGTGTTGACTGTGAACCGTAGTCACTTTCCC ]
[+] EMBL CD138849 [ GGTAAGCACTAGTATCACTTTTCCTAGATTTTTTGTACGGCGACTTAGTACTTTTATGATCGCAACAATCATCAGGAATACGAGCTGAAAGAGTGCATCTCGTACTCAGCGAAGATTTAGCTATCGCATTGTTCTTGGTATGGGACTCCCTTTGGTTAGATTTAAAATCTGTATGTGACGATTCAGATTTACTATCACATGAGTAAGACTCGATCTCGCTTTGATCGTTTGAATTGTTGCGTTCAAAGTGCGTAGTATGGGAGAGTTTATTTGACAAACCAGAACGTTTAACAGCGAATGATAAAGAACTACGTGTTGACTGTGAACCGTGGTCACTTTCCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10255#0 GATACGAGGATGATCTATGAGAGCGTGAACGTCTACGATTTTTCTGTGTTACGCCTTCAT 60
consensus_10255#1 ------------------------------------------------------------
consensus_10255#0 TAGTGCTCTTTGTACGAGAAGTTCCTCGATTGTTGCAACATTGAGAGACATCAGAACCTC 120
consensus_10255#1 ------------------------------------------------------------
consensus_10255#0 CTGATGAAATAGACTTCCTTCGACAACTTGTGGAGTGGTGACGATCCGAATTCTTTCTAC 180
consensus_10255#1 ------------ATGTACATCGACGATGGAAGGACTTTTATCGACTGGATTACTTGAAGT 48
* * * ***** * *** * * *** ** * ***
consensus_10255#0 GTCTTCTATGATGTGAATTTCTACCAGATAATTTTGAATGCGATTCATTCGAATTGACTG 240
consensus_10255#1 ATAATCCGTAGCATCGAAA-CTGCTTTTTGACTTTTCGCGC---TCGCGAGAATTAGTAG 104
* ** * * * ** * * * *** ** ** ***** *
consensus_10255#0 GGTCACATTTGCTAGAACCGTCTTGGTGCCTACAATCCTTCTTTTTCGTAGTTAAATCAC 300
consensus_10255#1 GAGTATGGTAAGCACTAGTATCACTTTTCCTAGA--TTTTTTGTACGGCGACTTAGTACT 162
* * * * * ** * **** * ** * * * * * *
consensus_10255#0 TTTTTGCTTCTTTTGACAGACTGGACTTGTTTAAGGGACGAGACGCTTTATGTGAAGTCT 360
consensus_10255#1 TTTATGATCGCAACAATCATCAGGAAT-----ACGAGCTGAAAGAGTGCATCTCGTA-CT 216
*** ** * * * *** * * * * ** * * ** * **
consensus_10255#0 CTAAGGAATTTGATTTCTGGTGATTATCTGGGGAGGTGGTATGCTCATTTTCACTAACTT 420
consensus_10255#1 CAGCGAAGATTTAGCTATCGCATTGTTCTTGGTATGGG----ACTCCCTTTGGTTAGATT 272
* * * ** * * * * * *** ** * * * *** *** ** **
consensus_10255#0 TCTCTGTATGTACAACTGAAGAGTCAAAATCACTATCACTTGAATCCCACGTAGATCTTG 480
consensus_10255#1 TA---AAATCTGTATGTGACGATTCAGATTTACTATCACATGAGTAAGAC-TCGATCTCG 328
* ** * * *** ** *** * * ******** *** * ** * ***** *
consensus_10255#0 CAGTACCTTTGATAACTCTGACGCTATTTGT-CTTCCCAGGAGTTAATTGATTTGACGAC 539
consensus_10255#1 CTTTGATCGTTTGAATTGTTGCGTTCAAAGTGCGTAGTATGGGAGAGTTTATTTGACAAA 388
* * * ** * * ** * ** * * * * * * ** ******* *
consensus_10255#0 GAACTAAGATTGCTAGGACGAGTTTCCGACAAACTATGATCTTTACACTGTGACTGATCA 599
consensus_10255#1 CCAGAACGTTTAACAG--CGAAT----GATAAAGAACTACGTGTTGACTGTGAACCGTAG 442
* * * ** ** *** * ** *** * * * * ******* *
consensus_10255#0 TCAACCTTCCGCCTTATTTTACGTTTCACATGTGAATGTTCTTTATTACCATGAGGCAAT 659
consensus_10255#1 TCACTTT----CCCTATTACGGGACTT-----TGTGTGTTTCCCGTTATTATCA------ 487
*** * ** **** * * ** **** *** ** *
consensus_10255#0 TCGTCGTCAGTACTATTATAAGCGACAAGAGTATTTGAACCAACTTGGTTCTGTTTTTGA 719
consensus_10255#1 TCTTCAGGGGT-CTGTTATTAGCGAGAAANATAAAAAAGAAAGACCG--CAGAATAATAG 544
** ** ** ** **** ***** ** ** * * * * *
consensus_10255#0 TCAGAGTACGATGTATGTTTTTCGGAGTAAGATACACAGGCATCTGAGCTGTGTTTAACC 779
consensus_10255#1 GAACAATCAGATGAACATTTATTTGAATA-GATAGCCA---------------------- 581
* * * **** * *** * ** ** **** **
consensus_10255#0 GATACAGAGTATTTACTGGAAGGACTTTTATCGACTGGATTACTTGAAGTATAATCCGTA 839
consensus_10255#1 ------------------------------------------------------------
consensus_10255#0 GCATCGAAACTGCTTTTTGACTTTTCGCGCTCGCGAGAATTAGTAGGAGTATGGTAAGCA 899
consensus_10255#1 ------------------------------------------------------------
consensus_10255#0 CTAGTATCACTTTTCCTAGATTTTTTGTACGGCGACTTAGTACTTTTATGATCGCAACAA 959
consensus_10255#1 ------------------------------------------------------------
consensus_10255#0 TCATCAGGAATACGAGCTGAAAGAGTGCATCTCGTACTCAGCGAAGATTTAGCTATCGCA 1019
consensus_10255#1 ------------------------------------------------------------
consensus_10255#0 TTGTTCTTGGTA 1031
consensus_10255#1 ------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||