cluster # 10258

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Schistosoma mansoni
cluster # 10258 cluster # 10258 Sequences # 14 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10258#0 length = 702 sequences # 10

consensus_10258#1 length = 683 sequences # 4

consensusID : consensus_10258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 702
fasta sequence

                              [AGATATAACGGAGAAAGAGGTACTCTCAGCTTTTGAGAGGTATGGTTATGTTGAACAAATTGATATTAAGCGTTCTCTGAAACCTGGTGCTCATTCTTATGCATTTGTGCGCTTTCAGAATGTTGATATGGCCAGTCGTGCGAAAATGTCCATGTCTGGTCGTTTTATTAGATCCCTACATTGCAAAATAGGTTATGGTAAGGCAATCCCATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTA-TTGCACATNC]

[+] EMBL CD194879             [AGATATAACGGAGAAAGAGGTACTCTCAGCTTTTGAGAGGTATGGTTATGTTGAACAAATTGATATTAAGCGTTCTCTGAAACCTGGTGCTCATTCTTATGCATTTGTGCGCTTTCAGAATGTTGATATGGCCAGTCGTGCGAAAATGTCCATGTCTGGTCGTTTTATTAGATCCCTACATTGCAAAATAGGTTATGGTAAGGCAATCCCATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAGTTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTANTATTANGTCTGATAATGGGATTCCTGNTACCGC AATAACTGTCGTATTCGAAC AATGATCATTTTGATGGNGGACCGTACACGACGAACCAGTATTACATANAAGATCCCGCCCGTG                                            ]
[+] EMBL CD127352             [                                                                                                                                                                                                                CCATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTAC              ]
[+] EMBL CD127462             [                                                                                                                                                                                                                CCATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACT                              ]
[-] EMBL CD127563             [                                                                                                                                                                                                                 CATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGCAGATTTTATAAACCCGAAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCAAAACTGTACGACACCTA CTATTTGCACATNC]
[-] EMBL CD128006             [                                                                                                                                                                                                                 CATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTATATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCACTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCAATACTGTACGACACCTACCTA TTGGAC    ]
[-] EMBL CD128095             [                                                                                                                                                                                                                 CATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGAGATTGATCTCAaaa                             ]
[-] EMBL CD128148             [                                                                                                                                                                                                                 CATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTA                             ]
[-] EMBL CD117712             [                                                                                                                                                                                                                                                                                                                                 TAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGT                         ]
[-] EMBL CD117625             [                                                                                                                                                                                                                                                                                                                                 TAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGT                         ]
[+] EMBL CD127714             [                                                                                                                                                                                                                                                                                                                                           ATCGCCGTTTATGACAGCTGCGAATCATCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACCACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTA           ]




>consensus_10258#0
AGATATAACGGAGAAAGAGGTACTCTCAGCTTTTGAGAGGTATGGTTATGTTGAACAAAT
TGATATTAAGCGTTCTCTGAAACCTGGTGCTCATTCTTATGCATTTGTGCGCTTTCAGAA
TGTTGATATGGCCAGTCGTGCGAAAATGTCCATGTCTGGTCGTTTTATTAGATCCCTACA
TTGCAAAATAGGTTATGGTAAGGCAATCCCATCGCACTGTCTGTATATTGGTGGATTAGA
ATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTA
TCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGC
ACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACT
TCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGAC
GGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTAT
AATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGA
TCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGA
TAAAAATCTCACTACTGTACGACACTTACCTATTGCACATNC

consensusID : consensus_10258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 683
fasta sequence

                              [GTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTTATGTAAAACCACCTTTTCATATATCTAATCGATATCACACATATAATCGGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAGTCCAACTTTACGTATTTCACGCCGGGGCACTCTTGACGCTTCATGGATGGCCGAAGCTACGCATCGTATTCATAATGTACTATCTACAGCACGTCATAACTTATGCCTCATGCTAATATTACCCGATACGGAGCAAACTAATAAGTATCTGCACAAGGAATCTAAACTGAATAATCAGTCGAACACTGAAATTACGAATGTAAAATCAACAATAAATGATTGTTTTTCACTACACGCTTTAATTGCTTATTTAAAATT]

[+] EMBL CD089953             [GTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTTATGTAAAACCACCTTTTCATATATCTAATCGATATCACACATATAATCGGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATCGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAG                                                                                                                                                                                                                                                                  ]
[+] EMBL CD136531             [                                                                       TTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTTATGTAAAACCACCTTTTCATATATCTAATCGATATCACACATATAATCGGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCGTGTAACCTGAAATCGATCGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGNAATAAAGATATTAGTCAA                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD146865             [                                                                                                                                                                             TCGGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAGTCCAACTTTACGTATTTCACGCCGGGGCACTCTTGACGCTTCATGGATGGCCGAAGCTACGCATCGTATTCATAATGTACTATCTACAGCACGTCATAACTTATGCCTCATGCTAATATTACCCGATACGGAGCAAACTAATAAGTATCTGCACAAGGAATCTAAACTGAATAATCAGTCGAACACTGAAATTACGAATGTAAAATCAACAATAAATGATTGTTTTTCACTACACGCTTTAATTGCTTATTTAAAATT]
[+] EMBL CD190615             [                                                                                                                                                                               GGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAGTCCAACTTTACGTATTTCACGCCGGGGCACTCTTGATGCTTCATGGATGGCCGAAGCTACGCATCGTATTCATAATGTACTATCTACAGCACGTCATAACTTATGCCTCATGCTAATATTACCCGATACGGAGCAAACTAATAA                                                                                                                  ]




>consensus_10258#1
GTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACG
ACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACAC
TTACCTTATGTAAAACCACCTTTTCATATATCTAATCGATATCACACATATAATCGGAAC
ACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAAC
CTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAA
GGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAAT
AAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTA
ACTAGTCCAACTTTACGTATTTCACGCCGGGGCACTCTTGACGCTTCATGGATGGCCGAA
GCTACGCATCGTATTCATAATGTACTATCTACAGCACGTCATAACTTATGCCTCATGCTA
ATATTACCCGATACGGAGCAAACTAATAAGTATCTGCACAAGGAATCTAAACTGAATAAT
CAGTCGAACACTGAAATTACGAATGTAAAATCAACAATAAATGATTGTTTTTCACTACAC
GCTTTAATTGCTTATTTAAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10258#0      AGATATAACGGAGAAAGAGGTACTCTCAGCTTTTGAGAGGTATGGTTATGTT-GAACAAA 59
consensus_10258#1      ----------------------------GTAACCGCAAATAACTGTCGTATTCGAACAAA 32
                                                   *     *  *   *  **  * ** *******

consensus_10258#0      T--TGATATTAAGCGTTCTCTGAAACCTGGTGCTCATTCTTATGCATTTGTGCGCTTTCA 117
consensus_10258#1      TGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGG 92
                       *  * ** ** *  *    * * *  *       ** * ***   *   *  * *     

consensus_10258#0      GAATGTTGATATGGCCAGTCGTGCGAAAATGTCC--ATGTCTGGTCGTTTTATTAGATCC 175
consensus_10258#1      TGATAAAAATCTCACTACT-GTACGACACTTACCTTATGTAAAACCACCTTTTCATATAT 151
                         **    ** *  * * * ** *** * *  **  ****     *   ** * * **  

consensus_10258#0      CTA--CATTGCAAAATAGGTTATGGTAAGGCAATCCCATCGCACTGTCTGTATATTGGTG 233
consensus_10258#1      CTAATCGATATCACACATATAATCGGAACACA-TCTCGCTACTCGGACAAC-CACGGTAT 209
                       ***  *  *   * * *  * ** * **  ** ** *    * * * *     *  *   

consensus_10258#0      GATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAAC 293
consensus_10258#1      ACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACT 269
                         * **    ** **      *  **  *        *    * ** *  ***    *  

consensus_10258#0      TAACT--TATCT-TGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCT 350
consensus_10258#1      GGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCT-TATTGAAAAATAACCATT 328
                         **   *****   *  **  *  * **    **  * *  *        ** **   *

consensus_10258#0      GCGAAT--CAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCC 408
consensus_10258#1      TTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGA----TATTAGTCAAGATTTACTG 384
                          * *  *     * ** * **** *  *** ** *    * * **  *  * *     

consensus_10258#0      GAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGAT 468
consensus_10258#1      GATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAGTCCAACT----TTACGTAT 440
                       ** * ***          **   **   ***    ** *********     * **  **

consensus_10258#0      TTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATC 528
consensus_10258#1      TTCACGCCGGGGCACTCTTGACGCTTCATG-GATGGCCGAAGC---TACGCATCGTATTC 496
                       ** *  *  *        * ** *   * * ** ** *    *    *    **  * **

consensus_10258#0      ACGAAATGCTATAATTAGGTC-TGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTA 587
consensus_10258#1      ATAATGTACTATCTACAGCACGTCATAACTT-ATGCCTCATGCTAATATTACCCGATACG 555
                       *  *  * ****    **  * * ****    ** ***    *    * ** * *     

consensus_10258#0      TT-CGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAA 646
consensus_10258#1      GAGCAAACTAATAAGTATCTGCACAAGGAATCTAAACTGAATAATCAGTCGAACACTGAA 615
                          * *** *** *  ** *  *   ** * *  *   **  ** ****   ***  ***

consensus_10258#0      GATCCCGCCG-GTGATAAAAATCTCACTACTGT-----ACGACACTTACCTATTGCACAT 700
consensus_10258#1      ATTACGAATGTAAAATCAACAATAAATGATTGTTTTTCACTACACGCTTTAATTGCTTAT 675
                         * *    *    ** ** *    *  * ***     ** ****      *****  **

consensus_10258#0      NC------ 702
consensus_10258#1      TTAAAATT 683