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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[TTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCAATGCAGTTGCAATATCCGATCAAGATAGTTCTAAAATTCGGATATTTGATGCACGTAGCAAAGGTGAATTATTACATACAATTGAAAAATTACATGAAGCGCCTATAGTATGTTTAGCGTTTAATCCTGTATATGCATGTGCATTAAGCGCTGATTCCGACGGTATGCTAGAATGTTGGTCTGGTCCAAAGAATAATTACAGTTTCCCACAGACACTTAAATGGGAATATAAATCAGATACAGATTTTTATTGTTTACTAGCTGAAAAAACCTTCGCATTCAGTGTTGTGTTCTCTCCATCTGGTGAGATTTTAGCAGTACTTGGAGCAGATCGAAAAATTCGATTATTTCGTTTTTCTACTGGAAAATTAATTCGTGTTTATGATGAAAGCCTTCAACAATATTCCAATTTACAACAGACTAAACAA]
[+] EMBL AI977617 [TTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCAATGCAGTTGCAATATCCGATCAAGATAGTTCTAAAATTCGGATATTTGATGCACGTAGCAAAGGTGAATTATTACATACAATTGAAAAATTACATGAAGCGCCTATAGTATGTTTAGCGTTTAATCCTGTATATGCATGTGCATTAAGCGCTGATTCCGACGGTATGCTAGAATGTTGGTCTGGTCCAAAGAATAATTACAGTTTCCCACAGACACTTAAATGGGAATATAAATCAGATACAGATTTTTATTGTTTACTAGCTGAAAAAACCTTCGCATTCAGTGTTGTGTTCTCTCCATCTGGTGAGATTTTAGCAGTACTTGGAGCAGATCGAAAAATTCGATTATTTCGTTTTTCTACTGGAAAATTAATTCGTGTTTATGATGAAAGCCTTCAACAATATTCCAATTTACAACAGACTAAACAA]
consensusID : consensus_10262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 511 fasta sequence
[TGAAGCAATTTACCTACGTAATATTCCAATAGCTCAATACTACGAAATAAGTTATATGCATAGAAATGTGATAACACACGTTGCCTACTCACAAACTCACTATTTGATGACATGTAGCAATGATGGTCATCTTAAGTTTTGGCGGAAAGCTGATGGTGTTGGACTAGAGTTTATCAAACACTACCGAGCACATTTAGGAGCTATTCTTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCACTGCAGTTGCAATGTATGCTACTTGTTAGTTTATTTGTTTATTCATCCAATCTACTATTTATTAAATACTAATTTTTTCTGAAACCGGTATATTTGGACTTTATATTAATATTGTTGTACAGCGCTTATGAACACTAAAATTT]
[+] EMBL CD079648 [TGAAGCAATTTACCTACGTAATATTCCAATAGCTCAATACTACGAAATAAGTTATATGCATAGAAATGTGATAACACACGTTGCCTACTCACAAACTCACTATTTGATGACATGTAGCAATGATGGTCATCTTAAGTTTTGGCGGAAAGCTGATGGTGTTGGACTAGAGTTTATCAAACACTACCGAGCACATTTAGGAGCTATTCTTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCACTGCAGTTGCAATGTATGCTACTTGTTAGTTTATTTGTTTATTCATCCAATCTACTATTTATTAAATACTAATTTTTTCTGAAACCGGTATATTTGGACTTTATATTAATATTGTTGTACAGCGCTTATGAACACTAAAATT ]
[+] EMBL AA819936 [TGAAGCAATTTACCTACGTAATATTCCAATAGCTCAATACTACGAAATAAGTTATATGCATAGAAATGTGATAACACACGTTGCCTACTCACAAACTCACTATTTGATGACATGTAGCAATGATGGTCATCTTAACTTTTGGCGGAAAGCTGATGGTATTGGACTAGAGTTTATCAAACACT ]
[-] EMBL CD073910 [ GAAGCAATTTACCTACGTAATATTCCAATAGCTCAATACTACGAAATAAGTTATATGCATAGAAATGTGATAACACACGTTGCCTACTCACAAACTCACTATTTGATGACATGTAGCAATGATGGTCATCTTAAGTTTTGGCGGAAAGCTGATGGTGTTGGACTAGAGTTTATCAAACACTACCGAGCACATTTAGGAGCTATTCTTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCACTGCAGTTGCAATGTATGCTACTTGTTAGTTTATTTGTTTATTCATCCAATCTACTATTTATTAAATACTAATTTTTTCTGAAACCGGTATATTTGGACTTTATATTAATATTGTTGTACAGCGCTTATAAACACTAAAATTT]
consensusID : consensus_10262#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence
[GCAAGCAGGATGGTTGATCTCTTCATGTGTTGTAGTAATCCTGTGCTTTTTGAGGTGAGTTGTATACTTCCTATTCTCTCAGCTTTTTGACTTTTACATTTGTCATTGAAGCGTTATCTATAACCAATGCACTACACAAATCTAAATGTCTACGTGTTCGCAAGTTTTTATCGTGTTTAAAAGCTTACTTTGCTTTGGGAGAGTGAAGAGCAGGAAGACAATAAAAGTTTGATTGGTAGAATGTCTAGTGGTACGTCATCGACTCTCTTATATGTTCTTTTTTGAAAAGTTACCACTAGAATTGATCCAAGTGACTTCGAAATTACGGAGAAATACGAGCTTGTTGGTGTTTTCCCTTTTTTAATGCTTCTTTTTCAGGGTCAAATGTCGCTCTTATACTTCGCTGCTGG]
[+] EMBL CD068954 [GCAAGCAGGATGGTTGATCTCTTCATGTGTTGTAGTAATCCTGTGCTTTTTGAGGTGAGTTGTATACTTCCTATTCTCTCAGCTTTTTGACTTTTACATTTGTCATTGAAGCGTTATCTATAACCAATGCACTACACAAATCTAAATGTCTACGTGTTCGCAAGTTTTTATCGTGTTTAAAAGCTTACTTTGCTTTGGGAGAGTGAAGAGCAGGAAGACAATAAAAGTTTGATTGGTAGAATGTCTAGTGGTACGTCATCGACTCTCTTATATGTTCTTTTTTGAAAAGTTACCACTAGAATTGATCCAAGTGACTTCGAAATTACGGAGAAATACGAGCTTGTTGGTGTTTTCCCTTTTTTAATGCTTCTTTTTCAGGGTCAAATGTCGCT ]
[+] EMBL CD084680 [ gTTTGTCATCGAAGCGTCATCTATAACCAATGCACTACACAAATCTAAATGTCTACGTGTTCGCAAGTTTTTATCGTGTTTAAAAGCTTACTTTGCTTTGGGAGAGTGAAGAGCAGGAAGACAATAAAAGTTTGATTGGTAGAATGTCTAGTGGTACGTCATCGACTCTCTTATATGTTCTTTTTTGAAAAGTTACCACTAGAATTGATCCAAGTGACTTCGAAATTACGGAGAAATACGAGCTTGTAGGTGTTTTCCCTTTTTTAATGCTTCTTTTTCAGGGTCAAATGTCGCTCTTATACTTCGCTGCTGG]
consensusID : consensus_10262#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 323 fasta sequence
[AAAGAAGCATTAAAAAAGGGAAAACACCAACAAGCTCGTATTTCTCCGTAATTTCGAAGTCACTTGGATCAATTCTAGTAGTAACACTAGACATTCTACCAATCAAACTTTTATTGTCTTCCTGCTCTTCACTCTCCTAAAGCAAAGTAAGCTTTTAAACACGATAAAAACTTGCGAACACGTAGACCACGACGGACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTCTGTAGCAATCCCTAAAAAGAAACGTAG]
[-] EMBL CD192544 [AAAGAAGCATTAAAAAAGGGAAAACACCAACAAGCTCGTATTTCTCCGTAATTTCGAAGTCACTTGGATCAATTCTAGTAGTAACACTAGACATTCTACCAATCAAACTTTTATTGTCTTCCTGCTCTTCACTCTCCTAAAGCAAAGTAAGCTTTTAAACACGATAAAAACTTGCGAACACGTAGACCACGACGGACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAG ]
[+] EMBL CD192066 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTCTGTAGCAATCCCTAAAAAGAAACGTAG]
[+] EMBL CD192680 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTC ]
[+] EMBL CD192299 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTC ]
[+] EMBL CD192455 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTC ]
[+] EMBL CD191939 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTC ]
consensusID : consensus_10262#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence
[AGAATCACCATTTTCGCTGACATCTTCCTGAAACTGCATCATTTCAGATGGTANAGGACCAACAGTATCTTCTCTAGGTTCATTTTGATCATTATCGTCGGCCTCGTTGGAATTTTCGGNTGGCAAAGGGCCGATGGCTTCATCATTTATCAGACATGATCAATTGATCGGGCCAACTGACCTTGAGATGACGTT]
[+] EMBL CD071508 [AGAATCACCATTTTCGCTGACATCTTCCTGAAACTGCATCATTTCAGATGGTANAGGACCAACAGTATCTTCTCTAGGTTCATTTTGATCATTATCGTCGGCCTCGTTGGAATTTTCGGNTGGCAAAGGGCCGATGGCTTCATCATTTATCAGACATGATCAATTGATCGGGCCAACTGACCTTGAGATGACGTT]
consensusID : consensus_10262#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence
[TGACCAAAGATAACTCATTAATGCTAATCGACTGCAGACAGGATCAACCTATTCGCAAGGTCAAAATGGATTTGAAATTAAATTCATTTTCATGGAATCCAATGGAACCATTCATGCCACGACGGACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCA]
[+] EMBL CD192597 [TGACCAAAGATAACTCATTAATGCTAATCGACTGCAGACAGGATCAACCTATTCGCAAGGTCAAAATGGATTTGAAATTAAATTCATTTTCATGGAATCCAATGGAACCATTCATGCCACGACGGACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10262#0 TTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTG 60
consensus_10262#1 ----------------------------------------------------TGAAGC-- 6
consensus_10262#3 ------------------------------------------------------------
consensus_10262#5 ------------------------------------------------------------
consensus_10262#4 ------------------------------------------------------------
consensus_10262#2 ------------------------------------------------------------
consensus_10262#0 CCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCAC 120
consensus_10262#1 ---AATTTACCTACGTAAT--ATTCCAATA-GCTCAATACTACGAAAT-AAGTTATATGC 59
consensus_10262#3 ------------------------------------------------------------
consensus_10262#5 ------------------------------------------------------------
consensus_10262#4 ------------------------------------------------------------
consensus_10262#2 ------------------------------------------------------------
consensus_10262#0 CTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCA--ATGCAGTTGCAATATC 178
consensus_10262#1 ATAG-AAATGTGATAACACACGT-TGCCTACTCACAAACTCACTATTTGATGACATGTAG 117
consensus_10262#3 ----------------------------------------AAAGAAGCATTAAAAAAGGG 20
consensus_10262#5 ------------------------------------------------------------
consensus_10262#4 ------------------------------------------------------------
consensus_10262#2 -------------------------------------GCAAGCAGGATGGTTGATCTCTT 23
consensus_10262#0 CGATCAAGATAGTTCTAAAATTCGGATATTTGATGCACGTAGCAAAGGTGAATT-ATTAC 237
consensus_10262#1 CAATGATGGTCATCTTAAGTTTTGGCGGAAAGCTGATGGTGTTGGACTAGAGTTTATCAA 177
consensus_10262#3 AAAACACCAACAAGCTCGTATTTCTCCGTAATTTCGAAGTCACTTGGATCAATTCTAGTA 80
consensus_10262#5 ---------------------------------------TGACCAAAGATAACTC----A 17
consensus_10262#4 ------------------------------------------------------------
consensus_10262#2 CATGTGTTGTAGTAATCCTGTGCTTTTTGAGGTGAGTTGTATACTTCCTATTCTCTCAGC 83
consensus_10262#0 ATACAATTGAAAAATTACATGAAGCGCCTATAGTATGTTTAGCGTTTAATCCTGTATATG 297
consensus_10262#1 ACACTACCGAG----CACATTTAGGAGCTATTCTTGGCTTGTCAGTTAGCTGTGATGGTG 233
consensus_10262#3 GTAACACTAGACA-TTCTACCAATCAAACTTTTATTGTCTTCCTGCTCTTCACTCTCCTA 139
consensus_10262#5 TTAATGCTAATCG-ACTG--CAGACAGGATCAACCTATTCGCAAGGTCAAAATGGATTTG 74
consensus_10262#4 ----------------------------------AGAATCACCATTTTCGCTGACATCTT 26
consensus_10262#2 TTTTTGACTTTTACATTTGTCATTGAAGCGTTATCTA-TAACCAATGCACTACACAAATC 142
*
consensus_10262#0 CATGTGCATTAAGCGCTGATTCCGACGGTA-TGCTAGAATGTTGGTCTGGTCCAAAGAAT 356
consensus_10262#1 AATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTT----TGATGTT---ATT 286
consensus_10262#3 AAGCAAAGTAAGCTTTTAAACACGATAAAAACTTGCGAACACG---------------TA 184
consensus_10262#5 AAATTAAATTCATTTTCATGGAATCCAA-----TGGAACCATT---------------CA 114
consensus_10262#4 CCTGAAACTGCATCATTTCAGATGGTANAGGACCAACAGTATCTTCTCTAGGTTCATTTT 86
consensus_10262#2 TAAATGTCTACGTGTTCGCAAGTTTTTATCGTGTTTAAAAGCTTACTTTGCTTT---GGG 199
*
consensus_10262#0 AATTACAGTTTCCCACAGACACTTAAATGGGAATATAAATCAGATACAGATTTTTA-TTG 415
consensus_10262#1 AATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTT--TCA 344
consensus_10262#3 GACCACGACGGACCGACGATAATGA--TCAAAATGAACCTAGAGAAGATACTGTTGGTCC 242
consensus_10262#5 TGCCACGACGGACCGACGATAATGA--TCAAAATGAACCTAGAGAAGATACTGTTGGTCC 172
consensus_10262#4 GATCATTATCGTCGGCCTCGTTGGAATTTTCGGNTGGCAAAGGGCCGATGGCTTCA-TCA 145
consensus_10262#2 AGAGTGAAGAGCAGGAAGACAATAAAAGTTTGATTGGTAGAATGTCTAGTGGTACG-TCA 258
* *
consensus_10262#0 TTTACTAGCTGAAAAAACCTTCGCATTCAGTGTTGTGTTCTCTCCATCTGGTGAGATTTT 475
consensus_10262#1 TTTA-TACTCCAAAGGATGAGGTCACT-GCAGTTGCAATGTATGCTACTTGTTAG--TTT 400
consensus_10262#3 TTTACCATCTGAAATGATGCAGTTTCAGGAAGATG---TCAGCGAAAATGGTGATTCTGT 299
consensus_10262#5 TTTACCATCTGAAATGATGCA--------------------------------------- 193
consensus_10262#4 TTTATCA---GACATGATCAATTGATCGGGCCAACTGACCTTGAGATGACGTT------- 195
consensus_10262#2 TCGACTCTCTTATATGTTCTTTTTT----GAAAAGTTACCACTAGAATTGATCCAAGTGA 314
* * * *
consensus_10262#0 AGCAGTACTTGGAGCAGATCGAAAAATT--CGATTATTTCGTTTTTCTACTGGAAAATTA 533
consensus_10262#1 ATTTGTTTATTCATCCAATCTACTATTTATTAAATACTAATTTTTTCTGAAACCGGTATA 460
consensus_10262#3 AGCAATCCCTAAAAAGAAACGTAG------------------------------------ 323
consensus_10262#5 ------------------------------------------------------------
consensus_10262#4 ------------------------------------------------------------
consensus_10262#2 CTTCGAAATTACGGAGAAATACGAGCTTGTTGGTGTTTTCCCTTTTTTAATGCTTCTTTT 374
consensus_10262#0 ATTCGTGTTTATGATGAAAGCCTTCAACAATATTCCAATTTACAACAGACTAAACAA 590
consensus_10262#1 TTTGGACTTTATATTAATATTGTTGTACAGCGCTTATGAACACTAAAATTT------ 511
consensus_10262#3 ---------------------------------------------------------
consensus_10262#5 ---------------------------------------------------------
consensus_10262#4 ---------------------------------------------------------
consensus_10262#2 TCAGGGTCAAATGTCGCTCTTATACTTCGCTGCTGG--------------------- 410
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||