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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence
[CCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTTTCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTAAGCCGTGGTTCATTTATTTCACTTGTAATTAAGGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGGTAAGTAATATAAATTTAAGACTCTGTTTTGGTTTTATGATTAAGTTAGTTGTAATAATTCCACGACCATTCGAAAAATGAGACTAGGAACTTGAAATTTCATGACAACTCCGATCCCTAATTTTTTAGAAAGTAGATAACGGGAAATCTTCAGCAACTTCTAGGCGAACTTATAGCTACACTTTGAATATCAACCATCACGAATTTGCCTGTCGACTTATAACACAGCANAAAAAGCTGAGACAGCTAGGTAGTAGAACCCTGAAGCAGTAGTTTTGAGTTTAACTAGCAGATTCGGGCCGCTCCAATGCTATAACCTGAGTAGTCAGC]
[-] EMBL CD135534 [CCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTTTCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGAC ]
[+] EMBL CD078958 [ CGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTAAGCCGTGGTTCATTTATTTCACTTGTAATTAAGGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGGTAAGTAATATAAATTTAAGACTCTGTTTTGGTTTTATGATTAAGTTAGTTGTAATAATTCCACGACCATTCGAAAAATGAGACTAGGAACTTGAAATTTCATGACAACTCCGATCCCTAATTTTTTAGAAAGTAGATAACGGGAAATCTTCAGCAACTTCTAGGCGAACTTATAGCTACACTTTGAATATCAACCATCACGAATTTGCCTGTCGACTTATAACACAGCANAAAAAGCTGAGACAGCTAGGTAGTAGAACCCTGAAGCAGTAGTTTTGAGTTTAACTAGCAGATTCGGGCCGCTCCAATGCTATAACCTGAGTAGTCAGC]
consensusID : consensus_10263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 584 fasta sequence
[CCTCCAGCCAAAATTCGGCACGAGGCTTATGAGACTTCTTGTTGTTAGGACATGCAGTCCCATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATAAAATCTT]
[+] EMBL CD079680 [CCTCCAGCCAAAATTCGGCACGAGGCTTATGAGACTTCTTGTTGTTAGGACATGCAGTCCCATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATA ]
[-] EMBL CD073940 [ CTTGTTGTTAGGACATGCAGTCCCATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATTTCTTGCCTTTTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTTTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATTTGAAAGACGAGACTTTAATGACCCGCAACAGTTTGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCCCCGTTATTTGGCCTTTGGTTTTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCCCTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATAA ]
[+] EMBL CD082635 [ GTTGTTAGGACATGCAGTCCCATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATA ]
[+] EMBL AI977724 [ CTCCTCTATGTCGGGGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATAAAATCTT]
[-] EMBL CD135360 [ TATGGCATATAATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGA ]
[+] EMBL CD079180 [ gCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATA ]
[-] EMBL CD135998 [ CGCTACAATCTCTCGCCTTCTGATTACAAACCATATGAGAAAGATGGTCAAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATA ]
[-] EMBL CD135990 [ CTATTTCTATGTAGAACCATATAGTACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGGCTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCGCCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATA ]
[+] EMBL CD135937 [ CCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAAT ]
[-] EMBL CD135983 [ CATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATA ]
[+] EMBL CD135392 [ tctacTCTGAAAGA GAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTG ]
consensusID : consensus_10263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[TTATTGCTTTCTATTCGAACATATGGATCTACCCAAGCTTTTCAAAAGTATAGTGATTTTCTTTGTCCACTGCATGTGGGTATTGTTTCGCTTTCTGTAAAAAGAAGAGGAAAAACAATTAGCAACCGTTTTTGGATAACTAGCTAACGTTTACCTAAATGTCCATGATAACTGCGGCCGTATCATACTATAAGCAGTCTACTTTGTGTTATCACCAATAAGGAAATATACACATCTGTAGTCAAGCCACTTGGTGGACGATGTGGAGGCAAGTGCTAAACTAAATAAGCGAATTTGTTCAGTCAGCTAATGCTCAACGGCTTTCGCAAGGTGTGATTTCGAAACGACCTACTTTATTCAGTTATAGCTTAATGTATAACCCACCACATACCTGACGTTTTCGGGGTCACTCATACATGCACACAATGGTCATTACGAAATACAAATCTGCTGATATAGCTGCCTACTGGCATGTTTTGGCCTAACTTTGACAAAACGCATTTAGTGGTTTTGCG]
[+] EMBL CD073412 [TTATTGCTTTCTATTCGAACATATGGATCTACCCAAGCTTTTCAAAAGTATAGTGATTTTCTTTGTCCACTGCATGTGGGTATTGTTTCGCTTTCTGTAAAAAGAAGAGGAAAAACAATTAGCAACCGTTTTTGGATAACTAGCTAACGTTTACCTAAATGTCCATGATAACTGCGGCCGTATCATACTATAAGCAGTCTACTTTGTGTTATCACCAATAAGGAAATATACACATCTGTAGTCAAGCCACTTGGTGGACGATGTGGAGGCAAGTGCTAAACTAAATAAGCGAATTTGTTCAGTCAGCTAATGCTCAACGGCTTTCGCAAGGTGTGATTTCGAAACGACCTACTTTATTCAGTTATAGCTTAATGTATAACCCACCACATACCTGACGTTTTCGGGGTCACTCATACATGCACACAATGGTCATTACGAAATACAAATCTGCTGATATAGCTGCCTACTGGCATGTTTTGGCCTAACTTTGACAAAACGCATTTAGTGGTTTTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10263#0 ------------------------------------------------------------
consensus_10263#1 CCTCCAGCCAAAATTCGGCACGAGGCTTATGAGACTTCTTGTTGTTAGGACATGCAGTCC 60
consensus_10263#2 ------------------------------------------------------------
consensus_10263#0 ---CCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACC 57
consensus_10263#1 CATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACC 120
consensus_10263#2 -----TTATTGCTTTCTATTCGAACATATGGATCTACCCAAGCTTTTCAAAAGTATAGTG 55
* * ** * * * ** ** ** * * ** *** * *
consensus_10263#0 GTTTCCCTGCACAAAGGCCGAACGGGAAGCGGCT-GCTAAACGCTACAATCTCTTGCCTT 116
consensus_10263#1 GTATCCCTGCACAAAGGCCGAACGGGAAGCGGCT-GCTAAACGCTACAATCTCTTGCCTT 179
consensus_10263#2 ATTTTCTTTGTCCACTGC-ATGTGGGTATTGTTTCGCTTTCTGTAAAAAGAAGAGGAAAA 114
* * * * * * ** *** * * * *** * * ** *
consensus_10263#0 CTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAAC 176
consensus_10263#1 CTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAAC 239
consensus_10263#2 ACAATTAGCAACCGTTTTTGGATAACTAGCTAACGTT-------TACCTAAATGT----C 163
**** **** *** * ** * ** * ** * * ** *
consensus_10263#0 CAT-ATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGA 235
consensus_10263#1 CAT-ATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGA 298
consensus_10263#2 CATGATAACTGCGGCCGTATCATACTATAAGCAGTCTACTTTGTGTTATCACCAATAAGG 223
*** **** * * ** * ** * * *** *** ** * *
consensus_10263#0 GACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCT 295
consensus_10263#1 GACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCT 358
consensus_10263#2 AAATATACACATCTGTAGT-------CAAGCCACTTGGTGGACGATGTGGAGGCAA--GT 274
* * ** * * * * * * *** * * * *** ** *
consensus_10263#0 GCGAAATTAAAGGAA--ATTTTAAAAGGCCAGCCAGTGTAAGCCGTGGTTCATTTATTTC 353
consensus_10263#1 GCGAAATTAAAGGAA--ATTTTAAAAGGCCAGCCAGTGT--------------------- 395
consensus_10263#2 GCTAAACTAAATAAGCGAATTTGTTCAGTCAGCTAATGCTCAACGGCTTTC--------- 325
** *** **** * * *** * **** * **
consensus_10263#0 ACTTGTAATTAAGGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGT 413
consensus_10263#1 ---------------GGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGT 440
consensus_10263#2 -------------GCAAGGTGTGAT-TTCGAAACGAC--CTACTTTATTCAGT-TATAGC 368
* ** * *** ***** * * ***** * * * *
consensus_10263#0 TCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTC-CCGCTGGTAAGTA-ATATAAA 471
consensus_10263#1 TCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTC-CCGCTGA-AAGCG-AAACAAT 497
consensus_10263#2 TTAATGTATAACCCA-CCACATACCTGACGTTTTCGGGGTCACTCATACATGCACACAAT 427
* *** * * ** ** * * * ** * ** * * * **
consensus_10263#0 TTTAAG-ACTCTGTTTTGGTTTTATGATTAAGTTAGTTGTAATAATTCCACGACCATTCG 530
consensus_10263#1 ACCCAC-ATGCAGTGGACAAAGAA-AATCACTATACTTTTGAAAAGCTTG-GGTAGATCC 554
consensus_10263#2 GGTCATTACGAAATACAAATCTGCTGATATAGCTGCCTACTGGCATGTTTTGGCCTAACT 487
* * * ** * * * * *
consensus_10263#0 AAAAATGAGACTAGGAACTTGAAATTTCATGACAACTCCGATCCCTAATTTTTTAGAAAG 590
consensus_10263#1 ATATGTTCGAATAGAAAGCAATAAAATCTT------------------------------ 584
consensus_10263#2 TTGA---CAAAACGCATTTAGTGGTTTTGCG----------------------------- 515
* * * *
consensus_10263#0 TAGATAACGGGAAATCTTCAGCAACTTCTAGGCGAACTTATAGCTACACTTTGAATATCA 650
consensus_10263#1 ------------------------------------------------------------
consensus_10263#2 ------------------------------------------------------------
consensus_10263#0 ACCATCACGAATTTGCCTGTCGACTTATAACACAGCANAAAAAGCTGAGACAGCTAGGTA 710
consensus_10263#1 ------------------------------------------------------------
consensus_10263#2 ------------------------------------------------------------
consensus_10263#0 GTAGAACCCTGAAGCAGTAGTTTTGAGTTTAACTAGCAGATTCGGGCCGCTCCAATGCTA 770
consensus_10263#1 ------------------------------------------------------------
consensus_10263#2 ------------------------------------------------------------
consensus_10263#0 TAACCTGAGTAGTCAGC 787
consensus_10263#1 -----------------
consensus_10263#2 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||