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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1449 fasta sequence
[TTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTACCA-TTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGA-CCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGCAGCAGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGC-TGCTAGTAAACCATGTCCATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGAAAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGGCTCAGGTAATCATCCTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTCACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGCAGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCACGTGATCATGAGGTACCGTTTTCATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATATGTCACCATCGTCATCGGTTTATCATACAGAGGAAGAAGTACCACATACTGTCAATCCAGTTCATCATTCTCCATTGCCAACACTTGNCAATCATTCACTAATCTCCGGTACTGTTACTGATTTATACCATAGTGGTCATGTGTTACAAGCGACTGTTG-AACATCCTGAAAG-TTC-AATCACGTTTAGAAGAAAATTTACTTCAGTGGATTACTTACGGCCCAGTTATTATTAACGATTTAAATGACTTATCATTCATAACTTCCATTATTATTCTTGACCCAAGGAATTATTTTTATTCCACCCATCGCATTCACCAATTAAATTTAATCTTTTGGGTCAGAAATCTAAAGAATGTCAATTAAAACAACTTAAATGGGCTGGTACAAAGTTATTGGTTAATTGCGATGCTAAGAATATCGAGGCCGTAACGCTTATTCAATC]
[+] EMBL CD186307 [TTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTACCA TTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGACCCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCATTGGATC ]
[+] EMBL CD186319 [TTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTACCA TTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGA CCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCATTGGATCA ]
[+] EMBL CD130708 [ TCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTATCATTTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGA CCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGT ]
[+] EMBL CD148783 [ TCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGTAGCAGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGC TGCTAGTAAACCATGTCCATC ]
[+] EMBL CD110860 [ TCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGCAGCAGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAGCTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGCTTGCTAGTAAACCATGTCCATC ]
[-] EMBL CD094432 [ ACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGCAGCAGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTA ]
[-] EMBL CD193817 [ TGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAAT ]
[+] EMBL CD093796 [ GGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGC TGCTAGTAAACCATGTCCATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGAAAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGGCTCAGGTAATCATCCTAGTGCCTTGACGTTACCG ]
[+] EMBL CD125987 [ TTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGC TGCTAGTAAACCATGTCCATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGAAAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGGCTCAGGTAATCATCCTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTCACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGCAGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCACGTGATCATGAGGTACCGTTTTCATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATATGTCACCATCGTCATCGGTTTATCATACAGAGGAAGAAGTACCACATACTGTCAATC ]
[+] EMBL CD133811 [ ACATGTCATCGGGATTAGTAGATGGTAGCAGTGC TGCTAGTAAACCATGTCCATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGAAAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGGCTCAGGTAATCATCCTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTCACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGCAGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCACGTGATCATGAGGTACCGTTTTCATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATATGTCACCATCGTCATCGGTTTATCATACAGAGGAAGAAGTACCACATACTGTCAATCCAGTTCATCATTCTCCATTGCCAACACTTGNCAATCATTCACTAATCTCCGGTACTGTTACTGATTTATACCATAGTGGTCATGTGTTACAAGCGACTGTTGAAACATCCTGAAAG TTC AATCACGTn ]
[-] EMBL CD066460 [ TTATTCCAGGCTCAGGTAATCATCNTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTCACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGCAGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCATGTGATCAAGAGGTACCGTTTTCATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATAT ]
[+] EMBL CD062574 [ CAGAGGAAGAAGTACCACATACTGTCAATCCAGTTCATCATTCTCCATTGCCAACACTTGCAAATCATTCACTAATCTCCGGTACTGTTACTGATTTATACCATAGTGGTCATGTGTTACAAGCGACTGTTG AACATCCTGAAAGTTTCAAATCACGTTTAGAAGAAAATTTACTTCAGTGGATTACTTACGGCCCAGTTATTATTAACGATTTAAATGACTTATCATTCATAACTTCCATTATTATTCTTGACCCAAGGAATTATTTTTATTCCACCCATCGCATTCACCAATTAAATTTAATCTTTTGGGTCAGAAATCTAAAGAATGTCAATTAAAACAACTTAAATGGGCTGGTACAAAGTTATTGGTTAATTGCGATGCTAAGAATATCGAGGCCGTAACGCTTATTCAATC]
[+] EMBL CD065139 [ TCCGGTACTGTTACTGATTTATACCATAGTGGTCATGTGTTACAAGCGACTGTTG AACATCCTGAAAGTTTCAAATCACGTTTAGAAGAAAATTTACTTCAc ]
consensusID : consensus_10269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[CATTTCATCCTAGAATAATTACTNGGTTTTGTTCTCTAAAATTCATTATCTNAGGGGGTCAGTTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTATCATTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTAATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGACCAGCTGACCTGTTTGAATTAGAACAACAGAAACGGCGGGTAGGTGGTGATCATGTTAATTTTTTAGAGTTGATTGTTTTATGCCGTTAACTAGGGTAGGCTATCACTCTACATCAAATTTACACTTAT]
[-] EMBL CD197719 [CATTTCATCCTAGAATAATTACTNGGTTTTGTTCTCTAAAATTCATTATCTNAGGGGGTCAGTTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTATCATTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTAATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGACCAGCTGACCTGTTTGAATTAGAACAACAGAAACGGCGGGTAGGTGGTGATCATGTTAATTTTTTAGAGTTGATTGTTTTATGCCGTTAACTAGGGTAGGCTATCACTCTACATCAAATTTACACTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10269#0 ------------------------------------------------------------
consensus_10269#1 CATTTCATCCTAGAATAATTACTNGGTTTTGTTCTCTAAAATTCATTATCTNAGGGGGTC 60
consensus_10269#0 --TTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAG 58
consensus_10269#1 AGTTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAG 120
**********************************************************
consensus_10269#0 TTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTACCATTCGGAAGTATA 118
consensus_10269#1 TTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTATCATTCGGAAGTATA 180
********************************************* **************
consensus_10269#0 TTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTC 178
consensus_10269#1 TTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTC 240
************************************************************
consensus_10269#0 GCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTT 238
consensus_10269#1 GCTACATATTTCTTGAGATTAATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTT 300
******************** ***************************************
consensus_10269#0 GGACCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAA 298
consensus_10269#1 GGACCAGCTGACCTGTTTGAATTAGAACAACAGAAACGGCGGG------TAGGTGGTGA- 353
*********** ****************************** ****** * *
consensus_10269#0 TCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGC- 357
consensus_10269#1 TCATGTTAATTTTTTAGAGTTGATTGTTTTATGCCGTTAACTAGGGTAGGCTATCACTCT 413
*** ** * * ** * ** * **** * *** * * *
consensus_10269#0 ACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCAC 417
consensus_10269#1 ACATCAAATTTACACTTAT----------------------------------------- 432
**** * * * *
consensus_10269#0 TGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCG 477
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 TGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGCAGC 537
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 AGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACG 597
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 TTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGCTGCTAGTAAACCATGTCC 657
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 ATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGA 717
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 AAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGG 777
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 CTCAGGTAATCATCCTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTC 837
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 ACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGC 897
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 AGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCACGTGATCATGAGGTACCGTTTTC 957
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 ATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATATGTCACCATC 1017
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 GTCATCGGTTTATCATACAGAGGAAGAAGTACCACATACTGTCAATCCAGTTCATCATTC 1077
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 TCCATTGCCAACACTTGNCAATCATTCACTAATCTCCGGTACTGTTACTGATTTATACCA 1137
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 TAGTGGTCATGTGTTACAAGCGACTGTTGAACATCCTGAAAGTTCAATCACGTTTAGAAG 1197
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 AAAATTTACTTCAGTGGATTACTTACGGCCCAGTTATTATTAACGATTTAAATGACTTAT 1257
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 CATTCATAACTTCCATTATTATTCTTGACCCAAGGAATTATTTTTATTCCACCCATCGCA 1317
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 TTCACCAATTAAATTTAATCTTTTGGGTCAGAAATCTAAAGAATGTCAATTAAAACAACT 1377
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 TAAATGGGCTGGTACAAAGTTATTGGTTAATTGCGATGCTAAGAATATCGAGGCCGTAAC 1437
consensus_10269#1 ------------------------------------------------------------
consensus_10269#0 GCTTATTCAATC 1449
consensus_10269#1 ------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||