These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1449 fasta sequence [TTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTACCA-TTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGA-CCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGCAGCAGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGC-TGCTAGTAAACCATGTCCATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGAAAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGGCTCAGGTAATCATCCTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTCACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGCAGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCACGTGATCATGAGGTACCGTTTTCATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATATGTCACCATCGTCATCGGTTTATCATACAGAGGAAGAAGTACCACATACTGTCAATCCAGTTCATCATTCTCCATTGCCAACACTTGNCAATCATTCACTAATCTCCGGTACTGTTACTGATTTATACCATAGTGGTCATGTGTTACAAGCGACTGTTG-AACATCCTGAAAG-TTC-AATCACGTTTAGAAGAAAATTTACTTCAGTGGATTACTTACGGCCCAGTTATTATTAACGATTTAAATGACTTATCATTCATAACTTCCATTATTATTCTTGACCCAAGGAATTATTTTTATTCCACCCATCGCATTCACCAATTAAATTTAATCTTTTGGGTCAGAAATCTAAAGAATGTCAATTAAAACAACTTAAATGGGCTGGTACAAAGTTATTGGTTAATTGCGATGCTAAGAATATCGAGGCCGTAACGCTTATTCAATC] [+] EMBL CD186307 [TTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTACCA TTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGACCCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCATTGGATC ] [+] EMBL CD186319 [TTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTACCA TTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGA CCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCATTGGATCA ] [+] EMBL CD130708 [ TCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTATCATTTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGA CCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGT ] [+] EMBL CD148783 [ TCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGTAGCAGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGC TGCTAGTAAACCATGTCCATC ] [+] EMBL CD110860 [ TCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAATCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGCAGCAGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAGCTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGCTTGCTAGTAAACCATGTCCATC ] [-] EMBL CD094432 [ ACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGCACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGCAGCAGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTA ] [-] EMBL CD193817 [ TGACTTCTACATTTCATTCAGCGAGCACTGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCGTGACCAGTGTCGAAT ] [+] EMBL CD093796 [ GGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGC TGCTAGTAAACCATGTCCATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGAAAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGGCTCAGGTAATCATCCTAGTGCCTTGACGTTACCG ] [+] EMBL CD125987 [ TTAATTCTCAAACTTCTGTTGGCACAACACGTTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGC TGCTAGTAAACCATGTCCATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGAAAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGGCTCAGGTAATCATCCTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTCACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGCAGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCACGTGATCATGAGGTACCGTTTTCATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATATGTCACCATCGTCATCGGTTTATCATACAGAGGAAGAAGTACCACATACTGTCAATC ] [+] EMBL CD133811 [ ACATGTCATCGGGATTAGTAGATGGTAGCAGTGC TGCTAGTAAACCATGTCCATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGAAAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGGCTCAGGTAATCATCCTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTCACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGCAGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCACGTGATCATGAGGTACCGTTTTCATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATATGTCACCATCGTCATCGGTTTATCATACAGAGGAAGAAGTACCACATACTGTCAATCCAGTTCATCATTCTCCATTGCCAACACTTGNCAATCATTCACTAATCTCCGGTACTGTTACTGATTTATACCATAGTGGTCATGTGTTACAAGCGACTGTTGAAACATCCTGAAAG TTC AATCACGTn ] [-] EMBL CD066460 [ TTATTCCAGGCTCAGGTAATCATCNTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTCACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGCAGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCATGTGATCAAGAGGTACCGTTTTCATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATAT ] [+] EMBL CD062574 [ CAGAGGAAGAAGTACCACATACTGTCAATCCAGTTCATCATTCTCCATTGCCAACACTTGCAAATCATTCACTAATCTCCGGTACTGTTACTGATTTATACCATAGTGGTCATGTGTTACAAGCGACTGTTG AACATCCTGAAAGTTTCAAATCACGTTTAGAAGAAAATTTACTTCAGTGGATTACTTACGGCCCAGTTATTATTAACGATTTAAATGACTTATCATTCATAACTTCCATTATTATTCTTGACCCAAGGAATTATTTTTATTCCACCCATCGCATTCACCAATTAAATTTAATCTTTTGGGTCAGAAATCTAAAGAATGTCAATTAAAACAACTTAAATGGGCTGGTACAAAGTTATTGGTTAATTGCGATGCTAAGAATATCGAGGCCGTAACGCTTATTCAATC] [+] EMBL CD065139 [ TCCGGTACTGTTACTGATTTATACCATAGTGGTCATGTGTTACAAGCGACTGTTG AACATCCTGAAAGTTTCAAATCACGTTTAGAAGAAAATTTACTTCAc ] consensusID : consensus_10269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [CATTTCATCCTAGAATAATTACTNGGTTTTGTTCTCTAAAATTCATTATCTNAGGGGGTCAGTTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTATCATTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTAATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGACCAGCTGACCTGTTTGAATTAGAACAACAGAAACGGCGGGTAGGTGGTGATCATGTTAATTTTTTAGAGTTGATTGTTTTATGCCGTTAACTAGGGTAGGCTATCACTCTACATCAAATTTACACTTAT] [-] EMBL CD197719 [CATTTCATCCTAGAATAATTACTNGGTTTTGTTCTCTAAAATTCATTATCTNAGGGGGTCAGTTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAGTTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTATCATTCGGAAGTATATTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTCGCTACATATTTCTTGAGATTAATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTTGGACCAGCTGACCTGTTTGAATTAGAACAACAGAAACGGCGGGTAGGTGGTGATCATGTTAATTTTTTAGAGTTGATTGTTTTATGCCGTTAACTAGGGTAGGCTATCACTCTACATCAAATTTACACTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10269#0 ------------------------------------------------------------ consensus_10269#1 CATTTCATCCTAGAATAATTACTNGGTTTTGTTCTCTAAAATTCATTATCTNAGGGGGTC 60 consensus_10269#0 --TTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAG 58 consensus_10269#1 AGTTGTGGGAATTCGTCAATATCGAATAACCAGAATGTGCCCGTCAGGTTATTGGATCAG 120 ********************************************************** consensus_10269#0 TTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTACCATTCGGAAGTATA 118 consensus_10269#1 TTGCTCACACAAACAGGTTTCAGAACCATGGGAACGGATTCAGTATCATTCGGAAGTATA 180 ********************************************* ************** consensus_10269#0 TTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTC 178 consensus_10269#1 TTTAACTGCACTGTAATTTCTGGCCAGTCTCGTGCTTATTTAATGGCCCTTCTTCACTTC 240 ************************************************************ consensus_10269#0 GCTACATATTTCTTGAGATTCATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTT 238 consensus_10269#1 GCTACATATTTCTTGAGATTAATGTGCTTGATTCACACGCAGGAATGCCTCCCAGAACTT 300 ******************** *************************************** consensus_10269#0 GGACCAGCTGATCTGTTTGAATTAGAACAACAGAAACGGCGGACTCGTCTAGGTGCTAAA 298 consensus_10269#1 GGACCAGCTGACCTGTTTGAATTAGAACAACAGAAACGGCGGG------TAGGTGGTGA- 353 *********** ****************************** ****** * * consensus_10269#0 TCACGTCGTAAATCTGGATCGGCGACCAGTAGTAACTCAACTGGTCACGGCGGTGATGC- 357 consensus_10269#1 TCATGTTAATTTTTTAGAGTTGATTGTTTTATGCCGTTAACTAGGGTAGGCTATCACTCT 413 *** ** * * ** * ** * **** * *** * * * consensus_10269#0 ACATGATTCTGGTATCAGTTCTCAGGAAGATTTGACTTCTACATTTCATTCAGCGAGCAC 417 consensus_10269#1 ACATCAAATTTACACTTAT----------------------------------------- 432 **** * * * * consensus_10269#0 TGGATCATCTCCTACACACGTTTCTGGTATGGCGTTGTGCATGACACATCGACTAACTCG 477 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 TGACCAGTGTCGAATGGCTGAAGTAGCTGCTCACTTTATGGTTACTCGGGAGGCTGCAGC 537 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 AGCAGCGGCGGCAGCGGCATCCGGTCTAATTAATTCTCAAACTTCTGTTGGCACAACACG 597 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 TTCGACTGACATGTCATCGGGATTAGTAGATGGTAGCAGTGCTGCTAGTAAACCATGTCC 657 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 ATCTAATAATTCACCTCGTTCTTATCGATCTCGGTATACTGAAGTTCCTTTGCTGATAGA 717 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 AAAATTCTTTGATGGTGATGAAGAGTTGTGTAGTTGTTTACCGATTGAAGTTATTCCAGG 777 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 CTCAGGTAATCATCCTAGTGCCTTGACGTTACCGCTAGGAAGAAGCAGCAGTCCAACTTC 837 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 ACCGTGTAATACGTTAGATAATTTTAAAACTCACTGTTTACCAATCTATCCACAGTCTGC 897 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 AGATCGTTCATCAAAACATTTGTGTTCCCTGCAATCACGTGATCATGAGGTACCGTTTTC 957 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 ATCATCATCAAGAGTAGGGGATGGATCTAATGTCTTTAGTATTGATAATATGTCACCATC 1017 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 GTCATCGGTTTATCATACAGAGGAAGAAGTACCACATACTGTCAATCCAGTTCATCATTC 1077 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 TCCATTGCCAACACTTGNCAATCATTCACTAATCTCCGGTACTGTTACTGATTTATACCA 1137 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 TAGTGGTCATGTGTTACAAGCGACTGTTGAACATCCTGAAAGTTCAATCACGTTTAGAAG 1197 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 AAAATTTACTTCAGTGGATTACTTACGGCCCAGTTATTATTAACGATTTAAATGACTTAT 1257 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 CATTCATAACTTCCATTATTATTCTTGACCCAAGGAATTATTTTTATTCCACCCATCGCA 1317 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 TTCACCAATTAAATTTAATCTTTTGGGTCAGAAATCTAAAGAATGTCAATTAAAACAACT 1377 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 TAAATGGGCTGGTACAAAGTTATTGGTTAATTGCGATGCTAAGAATATCGAGGCCGTAAC 1437 consensus_10269#1 ------------------------------------------------------------ consensus_10269#0 GCTTATTCAATC 1449 consensus_10269#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||