These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 444 fasta sequence [AATAACCATC-TT-AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA-TTCAAAGACTGATACTCATA-A-TAATGCGTAGAACA-C-ACGAAAACACTTCGAA-CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA-TACAAAGAATTCCATTCACTAAACCATGTTT] [+] EMBL CD125986 [ ATAACCATC TTCAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATATACTAATGCGTAGAACATCGACGATAACACTTCGAATCGAGCTAAAGATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTT ] [+] EMBL CD125978 [atTAACCATCTTT AGATTGACAGACAAGAA TCTGAATAAACACATCCATGATGAAT TTCATAGACTGATACTCATA A TAATGCGTAGAACA C ACGATATCACTTCGAA CAAACTAAAAATGAAGCAGCCGGATGATGAGCTTCTCCTTCATTCTTACCCTGAGGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAGACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTT ] [+] EMBL CD125938 [ TAACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGTATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTT ] [+] EMBL CD125896 [ TAACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAGGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTATCAGAGTCCGCTTGAAGTACAGATNATGACA TACAAAGAATTCCATTCACTAAACCATGTn ] [-] EMBL CD126026 [ AACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTTT] [-] EMBL CD126131 [ AACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTC CTAAGCCATGTT ] [-] EMBL CD125967 [ AACCATC TT AGATTGACAGACAAGAATTCTGAATAGACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATCTCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACACTACAAAGAATTCCATTCTCTAAACC ] [-] EMBL CD126141 [ AACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGATCA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TAC AAG ATTCCATTCACTAA CATGT ] [+] EMBL CD126109 [ ACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATNATGACA TACAAAGAATTCCATTCACTAAACCATGTT ] [+] EMBL CD126060 [ ATGAAAGTTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAGAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTT ] [-] EMBL CD126174 [ GTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TAC AAGAATTCCA TC CTAAACCATGT ] consensusID : consensus_10270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 327 fasta sequence [AACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCCAACAGGGTCTTGCCC] [-] EMBL CD125880 [AACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCCAACAGGGTCTTGCCC] [+] EMBL CD126068 [ acTCTTAGATTGACAGACAAGAATTCTGAAT AACACATCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAATGAAACAGCCGGATGATCAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACT ] consensusID : consensus_10270#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [AACCATCTTAGAGGGACAGACAAGAATTCGGAATAAACACAGCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACGTCGAACAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTTCAGCACAGGAAAC] [-] EMBL CD125976 [AACCATCTTAGAGGGACAGACAAGAATTCGGAATAAACACAGCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACGTCGAACAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTTCAGCACAGGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10270#0 AATAACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCA 60 consensus_10270#1 ---AACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCA 57 consensus_10270#2 ---AACCATCTTAGAGGGACAGACAAGAATTCGGAATAAACACAGCCATGATGAAATTCA 57 ************ *************** *********** *************** consensus_10270#0 AAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAAT 120 consensus_10270#1 AAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAAT 117 consensus_10270#2 AAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACGTCGAACAAACTAAAAAT 117 ****************************************** ***************** consensus_10270#0 GAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGT 180 consensus_10270#1 GAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGT 177 consensus_10270#2 GAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGT 177 ************************************************************ consensus_10270#0 GAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTT 240 consensus_10270#1 GAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTT 237 consensus_10270#2 GAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTT 237 ************************************************************ consensus_10270#0 ACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATG 300 consensus_10270#1 ACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATG 297 consensus_10270#2 ACTTTCGATCATGTTC-AGCACAGGAAAC------------------------------- 265 ************** * ** ** * consensus_10270#0 AAACTTATCACTCCAAA-GCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAA 359 consensus_10270#1 AAACTTATCACTCCCAACAGGGTCTTGCCC------------------------------ 327 consensus_10270#2 ------------------------------------------------------------ consensus_10270#0 ATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACATACAAA 419 consensus_10270#1 ------------------------------------------------------------ consensus_10270#2 ------------------------------------------------------------ consensus_10270#0 GAATTCCATTCACTAAACCATGTTT 444 consensus_10270#1 ------------------------- consensus_10270#2 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||