cluster # 10270

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Schistosoma mansoni
cluster # 10270 cluster # 10270 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10270#0 length = 444 sequences # 11

consensus_10270#1 length = 327 sequences # 2
consensus_10270#2 length = 265 sequences # 1

consensusID : consensus_10270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 444
fasta sequence

                              [AATAACCATC-TT-AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA-TTCAAAGACTGATACTCATA-A-TAATGCGTAGAACA-C-ACGAAAACACTTCGAA-CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA-TACAAAGAATTCCATTCACTAAACCATGTTT]

[+] EMBL CD125986             [ ATAACCATC TTCAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATATACTAATGCGTAGAACATCGACGATAACACTTCGAATCGAGCTAAAGATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTT ]
[+] EMBL CD125978             [atTAACCATCTTT AGATTGACAGACAAGAA TCTGAATAAACACATCCATGATGAAT TTCATAGACTGATACTCATA A TAATGCGTAGAACA C ACGATATCACTTCGAA CAAACTAAAAATGAAGCAGCCGGATGATGAGCTTCTCCTTCATTCTTACCCTGAGGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAGACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTT ]
[+] EMBL CD125938             [  TAACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGTATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTT ]
[+] EMBL CD125896             [  TAACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAGGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTATCAGAGTCCGCTTGAAGTACAGATNATGACA TACAAAGAATTCCATTCACTAAACCATGTn ]
[-] EMBL CD126026             [   AACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTTT]
[-] EMBL CD126131             [   AACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTC CTAAGCCATGTT ]
[-] EMBL CD125967             [   AACCATC TT AGATTGACAGACAAGAATTCTGAATAGACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATCTCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACACTACAAAGAATTCCATTCTCTAAACC      ]
[-] EMBL CD126141             [   AACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGATCA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TAC AAG ATTCCATTCACTAA  CATGT  ]
[+] EMBL CD126109             [    ACCATC TT AGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAA TTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAAAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATNATGACA TACAAAGAATTCCATTCACTAAACCATGTT ]
[+] EMBL CD126060             [                                                    ATGAAAGTTCAAAGACTGATACTCATA A TAATGCGTAGAACA C ACGAGAACACTTCGAA CAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TACAAAGAATTCCATTCACTAAACCATGTT ]
[-] EMBL CD126174             [                                                                                                                                                                                          GTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACA TAC AAGAATTCCA TC CTAAACCATGT  ]




>consensus_10270#0
AATAACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCA
AAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAAT
GAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGT
GAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTT
ACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATG
AAACTTATCACTCCAAAGCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAAA
TGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACATACAAAG
AATTCCATTCACTAAACCATGTTT

consensusID : consensus_10270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 327
fasta sequence

                              [AACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCCAACAGGGTCTTGCCC]

[-] EMBL CD125880             [AACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAACTTATCACTCCCAACAGGGTCTTGCCC]
[+] EMBL CD126068             [   acTCTTAGATTGACAGACAAGAATTCTGAAT AACACATCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAATGAAACAGCCGGATGATCAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACT                                                                                                                                 ]




>consensus_10270#1
AACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCAAAG
ACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAATGAA
ACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAG
TTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACT
TTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATGAAA
CTTATCACTCCCAACAGGGTCTTGCCC

consensusID : consensus_10270#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [AACCATCTTAGAGGGACAGACAAGAATTCGGAATAAACACAGCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACGTCGAACAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTTCAGCACAGGAAAC]

[-] EMBL CD125976             [AACCATCTTAGAGGGACAGACAAGAATTCGGAATAAACACAGCCATGATGAAATTCAAAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACGTCGAACAAACTAAAAATGAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACTTTCGATCATGTTCAGCACAGGAAAC]




>consensus_10270#2
AACCATCTTAGAGGGACAGACAAGAATTCGGAATAAACACAGCCATGATGAAATTCAAAG
ACTGATACTCATAATAATGCGTAGAACACACGAAAACACGTCGAACAAACTAAAAATGAA
ACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGTGAG
TTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTTACT
TTCGATCATGTTCAGCACAGGAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10270#0      AATAACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCA 60
consensus_10270#1      ---AACCATCTTAGATTGACAGACAAGAATTCTGAATAAACACATCCATGATGAAATTCA 57
consensus_10270#2      ---AACCATCTTAGAGGGACAGACAAGAATTCGGAATAAACACAGCCATGATGAAATTCA 57
                          ************  *************** *********** ***************

consensus_10270#0      AAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAAT 120
consensus_10270#1      AAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACTTCGAACAAACTAAAAAT 117
consensus_10270#2      AAGACTGATACTCATAATAATGCGTAGAACACACGAAAACACGTCGAACAAACTAAAAAT 117
                       ****************************************** *****************

consensus_10270#0      GAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGT 180
consensus_10270#1      GAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGT 177
consensus_10270#2      GAAACAGCCGGATGATAAGCTTCTCCTTCAATCTTACCCTGAAGAATGTCGAAGGAGAGT 177
                       ************************************************************

consensus_10270#0      GAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTT 240
consensus_10270#1      GAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTT 237
consensus_10270#2      GAGTTGAGGAATATATCGACTGTAATTTACTGTAGATGGCTGTATTGTCTTTTTGCTTTT 237
                       ************************************************************

consensus_10270#0      ACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATG 300
consensus_10270#1      ACTTTCGATCATGTAAGAAAACTCTAAGCATTGATAATCGATATGTGGTTTCAGACGATG 297
consensus_10270#2      ACTTTCGATCATGTTC-AGCACAGGAAAC------------------------------- 265
                       **************   *  **   ** *                               

consensus_10270#0      AAACTTATCACTCCAAA-GCCGTCCAGAAAAAACATCTGTAGAACTAGTATCGATTTCAA 359
consensus_10270#1      AAACTTATCACTCCCAACAGGGTCTTGCCC------------------------------ 327
consensus_10270#2      ------------------------------------------------------------
                                                                                   

consensus_10270#0      ATGGAATCAATCTCTCCTGTTTTTCAGAGTCCGCTTGAAGTACAGATAATGACATACAAA 419
consensus_10270#1      ------------------------------------------------------------
consensus_10270#2      ------------------------------------------------------------
                                                                                   

consensus_10270#0      GAATTCCATTCACTAAACCATGTTT 444
consensus_10270#1      -------------------------
consensus_10270#2      -------------------------