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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1141 fasta sequence
[TGTAACGTTACATCCCGTGTCATTCTGGTTGACTT--AATGACACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT-GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC---TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG-GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATATCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAAAGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT-ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA-TCAATGAAGCCTAC-TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACA-CAA-GGAAATTCGGAAAACGTCCTCCAAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCATGCAACCTACGCTTGACCACACTTAGTATTATATACACCACTTCTTTGATAAAATAAAAATAT]
[+] EMBL CD079836 [TGTAACGTTACATCCCGTGTCATTCTGGTTGACTT AATGACACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATATCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAAAGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGG AAACATCCTACGTGACCGCANAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTG ]
[+] EMBL CD079281 [ CCCGTGTCATTCTGGTTGACTTAGAATGACACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAGGTTTAAACAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAGGGGTTATGGAT CACACAAAAAGGGTGATTATGCGCACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGAT GGAAATG ATACTCNTTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATATCTTATCANATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGGTGTGGCTTGCAGCTTTATAACTTTGGTGCG ]
[+] EMBL CD131906 [ aattacagGATTT TATGA A TGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTACGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGG ]
[+] EMBL BF936210 [ ACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATATCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTT ]
[+] EMBL AI975807 [ ACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTA ]
[+] EMBL BF936335 [ ACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTGTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAAGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGCGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTATCTGAGTCG GGGTGATCCTTTGGGAGC ]
[-] EMBL CD096822 [ CTACACACAGTGATATTATATTGAGAGCTGTAGAAAAGAATATATCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAAAGCTTCTACGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATA ]
[+] EMBL CD117890 [ TTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAAAGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTG ]
[-] EMBL CD076994 [ GTCATCCGGAAAGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACA CAA GGAAATTCGGAAAACGTCCTCCAAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCATGCAACCTACGCTTGACCACACTTAGTATTATATACACCACTTCTTTGATAAAATAAAAATAT]
[+] EMBL CD115120 [ CCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAATATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTCACACTACACCAA GGAAATTCNGAAAACGTCCTNCAAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCAT ]
[+] EMBL CD115117 [ CCTACGTGACCGCGAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACA CAANGGAAATCCGG AAACGTCCTTNCAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCAT ]
[-] EMBL CD140184 [ AAGTCTACGAACCATCTCGCTTTATGTCTTGTCGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGCAAATGCAGTTATTACGAAGTCCTTTAATTGTAATTTGCTTATCTCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATACTCAATGAAGCCTACATTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCAACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATAT ]
[-] EMBL CD140115 [ CTACGAACCATCTCGCTTAATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATAT ]
[+] EMBL CD195065 [ GCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACA CAA GGAAATTCGGAAAACGTCCTCCAAATTTGTCAGGACACCATACACCTAC ]
consensusID : consensus_10283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[AAAAGGTCAAGGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGTATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATATCAATGAAGCCTACTTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTG]
[+] EMBL CD087363 [AAAAGGTCAAGGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGTATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATATCAATGAAGCCTACTTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10283#0 TGTAACGTTACATCCCGTGTCATTCTGGTTGACTTAATGACACGGTTATCAGTGTATCGA 60
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 ACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTA 120
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 TACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTATGATGTA 180
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 CTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGG 240
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 TTCAAAACATTGGATATCGATGGGAAATGCATACTTCCAGCCGATCGAGAATTCGTGGAG 300
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 CAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTGGTCGTGGGT 360
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 GATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATA 420
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 TCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAG 480
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 CTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAA 540
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 AGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTG 600
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 GATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAA 660
consensus_10283#1 ---------------AAAAGGTCAAGGGAAAACATCCTACGTGACCGCAAAGTCTACGAA 45
* * ** **********************************
consensus_10283#0 CCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGG 720
consensus_10283#1 CCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGG 105
************************************************************
consensus_10283#0 AAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGTATTGTAATT 780
consensus_10283#1 AAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGTATTGTAATT 165
************************************************************
consensus_10283#0 TGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATATC 840
consensus_10283#1 TGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATATC 225
************************************************************
consensus_10283#0 AATGAAGCCTACTTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGT 900
consensus_10283#1 AATGAAGCCTACTTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGT 285
************************************************************
consensus_10283#0 ATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGA 960
consensus_10283#1 ATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTG----------- 334
*************************************************
consensus_10283#0 AACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACACAAGGAAATTCGGAA 1020
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 AACGTCCTCCAAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCATG 1080
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 CAACCTACGCTTGACCACACTTAGTATTATATACACCACTTCTTTGATAAAATAAAAATA 1140
consensus_10283#1 ------------------------------------------------------------
consensus_10283#0 T 1141
consensus_10283#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||