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Schistosoma mansoni
cluster # 10294 cluster # 10294       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10294#0 length = 625 sequences # 12  
consensus_10294#1 length = 300 sequences # 3  

consensusID : consensus_10294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 625
fasta sequence
                              [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA-GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG-CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAATAAATCTAAGCCAACGATTAAAACAGT]

[+] EMBL AI067183             [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAATAAATCTAAGCCAACGATTAAAACAGT]
[+] EMBL AI067897             [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGATATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACACAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGCACGCATGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCTAATAAATCTAAGCCA              ]
[+] EMBL AI067352             [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACATAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGA TGCGTCTTAAAATGGNACGC                                                                                                                                                        ]
[+] EMBL AI067337             [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAGAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCGTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCCTA TACATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAC ATCGTAAATCGGGCGTG                                                                                                                                                                                                           ]
[+] EMBL AI067713             [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAA                                                                                                                                                                                   ]
[+] EMBL AI067149             [      TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGATATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGATTGCTTTTTCTTATTTAGGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAGTCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAAT                                                                                                                                                               ]
[+] EMBL AI067463             [      TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAA CGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGAGACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAGAATCGTAAATCGGGC                                                                                                                                                                                                              ]
[+] EMBL AI068072             [      TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCG                                                                                                                                                                                                                        ]
[+] EMBL AI067681             [      TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAC                                                                                                                                                                                                                             ]
[+] EMBL AI068058             [      TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTT                                                                                                                                                                                                                                       ]
[+] EMBL AI067146             [      TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGAGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGCTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCAATCGACACAAAAG CCTATTAGATCTGCAGCAAGACGCTTTTTAAACTTGT                                                                                                                                                                                                                                        ]
[+] EMBL AI066978             [      TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGANAAAAACCGTTTGTTTGCTTTTTCTTAT                                                                                                                                                                                                                                                                                                                                         ]


>consensus_10294#0 CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTC CGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTAT AACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAA TTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAA TAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTT AGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTA TTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCG TGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAAC AACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAA CTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAATA AATCTAAGCCAACGATTAAAACAGT



consensusID : consensus_10294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 300
fasta sequence
                              [CATATGTTCAAGTCAACCAAAAATGAGTTAAAGGTTAAGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCAGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAACTTG]

[+] EMBL CD139760             [CATATGTTCAAGTCAACCAAAAATGAGTTAAAGGTTAAGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCAGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAACTTG]
[-] EMBL CD063023             [                                     AGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCTGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTcgga                          ]
[+] EMBL CD145741             [                                                                                                                                                                                                      GCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAA    ]


>consensus_10294#1 CATATGTTCAAGTCAACCAAAAATGAGTTAAAGGTTAAGAAAATGTCAAGGAAACTTAGT GTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCAC AACGTCAGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATT GTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTA GGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAACTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10294#0      CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTC 60
consensus_10294#1      ------------------------------------------------------------
                                                                                   

consensus_10294#0      CGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTAT 120
consensus_10294#1      -----CATATGTTCAAGTCAACCAAAAATGAGTTAA---AGGTTAAGAAAATGTCAAGGA 52
                              * ****    *   * *******   * *   ** *  *    ** *      

consensus_10294#0      AACT-GCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACA 179
consensus_10294#1      AACTTAGTGTCAAATTAGCTGAATTGTTGCAAA-TAACCGAGAAAGCTAGCCAAAGTTCA 111
                       ****   * *  * ** * **** *   *     * * *  *   * *     *    **

consensus_10294#0      ATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTA 239
consensus_10294#1      GT-AAATCACAACGTCAGGTACAAC--CGTCTAAAGTTATCGTTAGCCTTGTTCGAACTA 168
                        * * ** * * * *    *  * *  *  **   ******  *     *  *  *  **

consensus_10294#0      ATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATT 299
consensus_10294#1      CT--TGTGTGTATTGTAAAACT------TGATGAAAACGCTTTGTCTGC----------- 209
                        *   ***   *  * ***  *      ***  *****  ***** ***           

consensus_10294#0      TAGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCT 359
consensus_10294#1      --GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCT 267
                         **********************************************************

consensus_10294#0      ATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGC 419
consensus_10294#1      ATTAGATCTGCAGCACGACGCTTTTTAAACTTG--------------------------- 300
                       *********************************                           

consensus_10294#0      GTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAA 479
consensus_10294#1      ------------------------------------------------------------
                                                                                   

consensus_10294#0      CAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACA 539
consensus_10294#1      ------------------------------------------------------------
                                                                                   

consensus_10294#0      ACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAAT 599
consensus_10294#1      ------------------------------------------------------------
                                                                                   

consensus_10294#0      AAATCTAAGCCAACGATTAAAACAGT 625
consensus_10294#1      --------------------------
                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)