These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 625 fasta sequence [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA-GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG-CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAATAAATCTAAGCCAACGATTAAAACAGT] [+] EMBL AI067183 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAATAAATCTAAGCCAACGATTAAAACAGT] [+] EMBL AI067897 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGATATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACACAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGCACGCATGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCTAATAAATCTAAGCCA ] [+] EMBL AI067352 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACATAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGA TGCGTCTTAAAATGGNACGC ] [+] EMBL AI067337 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAGAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCGTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCCTA TACATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAC ATCGTAAATCGGGCGTG ] [+] EMBL AI067713 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAA ] [+] EMBL AI067149 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGATATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGATTGCTTTTTCTTATTTAGGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAGTCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAAT ] [+] EMBL AI067463 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAA CGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGAGACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAGAATCGTAAATCGGGC ] [+] EMBL AI068072 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCG ] [+] EMBL AI067681 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAC ] [+] EMBL AI068058 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTT ] [+] EMBL AI067146 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGAGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGCTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCAATCGACACAAAAG CCTATTAGATCTGCAGCAAGACGCTTTTTAAACTTGT ] [+] EMBL AI066978 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGANAAAAACCGTTTGTTTGCTTTTTCTTAT ] consensusID : consensus_10294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 300 fasta sequence [CATATGTTCAAGTCAACCAAAAATGAGTTAAAGGTTAAGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCAGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAACTTG] [+] EMBL CD139760 [CATATGTTCAAGTCAACCAAAAATGAGTTAAAGGTTAAGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCAGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAACTTG] [-] EMBL CD063023 [ AGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCTGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTcgga ] [+] EMBL CD145741 [ GCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10294#0 CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTC 60 consensus_10294#1 ------------------------------------------------------------ consensus_10294#0 CGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTAT 120 consensus_10294#1 -----CATATGTTCAAGTCAACCAAAAATGAGTTAA---AGGTTAAGAAAATGTCAAGGA 52 * **** * * ******* * * ** * * ** * consensus_10294#0 AACT-GCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACA 179 consensus_10294#1 AACTTAGTGTCAAATTAGCTGAATTGTTGCAAA-TAACCGAGAAAGCTAGCCAAAGTTCA 111 **** * * * ** * **** * * * * * * * * * ** consensus_10294#0 ATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTA 239 consensus_10294#1 GT-AAATCACAACGTCAGGTACAAC--CGTCTAAAGTTATCGTTAGCCTTGTTCGAACTA 168 * * ** * * * * * * * * ** ****** * * * * ** consensus_10294#0 ATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATT 299 consensus_10294#1 CT--TGTGTGTATTGTAAAACT------TGATGAAAACGCTTTGTCTGC----------- 209 * *** * * *** * *** ***** ***** *** consensus_10294#0 TAGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCT 359 consensus_10294#1 --GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCT 267 ********************************************************** consensus_10294#0 ATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGC 419 consensus_10294#1 ATTAGATCTGCAGCACGACGCTTTTTAAACTTG--------------------------- 300 ********************************* consensus_10294#0 GTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAA 479 consensus_10294#1 ------------------------------------------------------------ consensus_10294#0 CAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACA 539 consensus_10294#1 ------------------------------------------------------------ consensus_10294#0 ACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAAT 599 consensus_10294#1 ------------------------------------------------------------ consensus_10294#0 AAATCTAAGCCAACGATTAAAACAGT 625 consensus_10294#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||