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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 625 fasta sequence
[CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA-GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG-CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAATAAATCTAAGCCAACGATTAAAACAGT]
[+] EMBL AI067183 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAATAAATCTAAGCCAACGATTAAAACAGT]
[+] EMBL AI067897 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGATATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACACAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGCACGCATGAAACAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACAACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCTAATAAATCTAAGCCA ]
[+] EMBL AI067352 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACATAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGA TGCGTCTTAAAATGGNACGC ]
[+] EMBL AI067337 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAGAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCGTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCCTA TACATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAC ATCGTAAATCGGGCGTG ]
[+] EMBL AI067713 [CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAA ]
[+] EMBL AI067149 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGATATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGATTGCTTTTTCTTATTTAGGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAGTCGTAAATCGGGCGTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAAT ]
[+] EMBL AI067463 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAA CGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGAGACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAGAATCGTAAATCGGGC ]
[+] EMBL AI068072 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCG ]
[+] EMBL AI067681 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAAC ]
[+] EMBL AI068058 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAG CCTATTAGATCTGCAGCACGACGCTTTTTAAACTTGTT ]
[+] EMBL AI067146 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGAGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGCTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATTTA GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCAATCGACACAAAAG CCTATTAGATCTGCAGCAAGACGCTTTTTAAACTTGT ]
[+] EMBL AI066978 [ TCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTCCGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTATAACTGCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACAATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTAATAAAGTGAAAACAGGAAAGTTGTATATTGANAAAAACCGTTTGTTTGCTTTTTCTTAT ]
consensusID : consensus_10294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 300 fasta sequence
[CATATGTTCAAGTCAACCAAAAATGAGTTAAAGGTTAAGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCAGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAACTTG]
[+] EMBL CD139760 [CATATGTTCAAGTCAACCAAAAATGAGTTAAAGGTTAAGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCAGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAACTTG]
[-] EMBL CD063023 [ AGAAAATGTCAAGGAAACTTAGTGTCAAATTAGCTGAATTGTTGCAAATAACCGAGAAAGCTAGCCAAAGTTCAGTAAATCACAACGTCTGGTACAACCGTCTAAAGTTATCGTTAGCCTTGTTCGAACTACTTGTGTGTATTGTAAAACTTGATGAAAACGCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTcgga ]
[+] EMBL CD145741 [ GCTTTGTCTGCGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCTATTAGATCTGCAGCACGACGCTTTTTAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10294#0 CTTATCTCCGTTATCTCTCGACATTTAACTTATTACATTATTAAAATGTAGCTGTGATTC 60
consensus_10294#1 ------------------------------------------------------------
consensus_10294#0 CGTGAGTTTTGTTTCGTTTCTCAAAAAATGTTCTGATGTAGTTCGATTCCATCTGCCTAT 120
consensus_10294#1 -----CATATGTTCAAGTCAACCAAAAATGAGTTAA---AGGTTAAGAAAATGTCAAGGA 52
* **** * * ******* * * ** * * ** *
consensus_10294#0 AACT-GCTATAGATTTTGTTGAAATAGCGTTCTCTGAGCACGGCGGTTTAAAGATACACA 179
consensus_10294#1 AACTTAGTGTCAAATTAGCTGAATTGTTGCAAA-TAACCGAGAAAGCTAGCCAAAGTTCA 111
**** * * * ** * **** * * * * * * * * * **
consensus_10294#0 ATTAGATGATATCATTCTCTTGAGCAACTCCTTTGGTTATCAGTCATGATTATACATTTA 239
consensus_10294#1 GT-AAATCACAACGTCAGGTACAAC--CGTCTAAAGTTATCGTTAGCCTTGTTCGAACTA 168
* * ** * * * * * * * * ** ****** * * * * **
consensus_10294#0 ATAAAGTGAAAACAGGAAAGTTGTATATTGAAAAAAACCGTTTGTTTGCTTTTTCTTATT 299
consensus_10294#1 CT--TGTGTGTATTGTAAAACT------TGATGAAAACGCTTTGTCTGC----------- 209
* *** * * *** * *** ***** ***** ***
consensus_10294#0 TAGTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCT 359
consensus_10294#1 --GTTTCTTCAAGATGACATTGTTAAGCTTCTAGGGAAATTTCCATCGACACAAAAGCCT 267
**********************************************************
consensus_10294#0 ATTAGATCTGCAGCACGACGCTTTTTAAACTTGTTGAAAGAGAACAATCGTAAATCGGGC 419
consensus_10294#1 ATTAGATCTGCAGCACGACGCTTTTTAAACTTG--------------------------- 300
*********************************
consensus_10294#0 GTGTTTAATGAATCTGAAAGTCGACAAGAAAGATTGCGTCTTAAAATGGAACGCAAGAAA 479
consensus_10294#1 ------------------------------------------------------------
consensus_10294#0 CAACGTCAACAGAAGCGTAAAGAAAAAGCCTTAATGAAAAAGGAACCGACGAATAAAACA 539
consensus_10294#1 ------------------------------------------------------------
consensus_10294#0 ACTGGACCAAAACGAAATGAAGTCAACGCGAAAAAGAAGTCTCTTAAGAATAATGCCAAT 599
consensus_10294#1 ------------------------------------------------------------
consensus_10294#0 AAATCTAAGCCAACGATTAAAACAGT 625
consensus_10294#1 --------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||