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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 924 fasta sequence
[AGGCCATTAATTCGGCACGAGGGATTACAAATATATTATTTATTGTTTACTAATGATTTTTAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCCTCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA-AATG-A-AACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTAAGTACTTGTAAATGTATATTTTGTAACCAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAANNNNNAAAAAAAAAAAAAAA]
[+] EMBL CD081802 [AGGCCATTAATTCGGCACGAGGGATTACAAATATATTATTTATTGTTTACTAATGATTTTTAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCCTCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTNCAGAAGAGTTAGAACATCCATGAACATACANNATG A AACTTGGTTCTACAGTGTGGCTNTATATGTAACGTTAATCAGTGGTTCTAAGTACTTGTAANTGTAT ]
[+] EMBL CD081710 [gaGCCTTTAATTCGGCACGA CGATTACAAATATATTATTTATTGTTTACTAATGATTTTTAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCCTCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATG ANAACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTAAGTACTTGTAAATGTAT ]
[-] EMBL CD075533 [ TGATTTTTAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCCTCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATGAA AACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTGGGTACTTGTAAATGTAaa ]
[-] EMBL CD097862 [ ATTTAG ATATGCTCGATAGACCATTATGAAATTGCACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACGCGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCAT ]
[-] EMBL CD133210 [ TCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTCTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGG ]
[-] EMBL AI394799 [ GATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTAATATGTCGACCTATTTGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATTTCGCAGTGTTTTAAATTACTACTGGGGTTTTGTTGAAGATGAAGATGCTTTCGATATGGGGAAAGCACTTTCAGCAGATGTGCTTAAACGATTTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATGAA AAATTGGTTTTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTTTAAGTACTTGTAAATGTTTTTTTTGTAACCAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAANNNNNAAAAAAAAAAAAAAA]
[-] EMBL AI395203 [ CGAACGG AACGAT TTACTATGTGGA CTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATGAA AACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTAAGTACTTGTAAATGTATCTTTTGTAACAAAAAAAAAAAAAAAAA ]
[+] EMBL CD198410 [ TAAATAGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTCGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATG A AA ]
consensusID : consensus_10300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 562 fasta sequence
[GTGCCTGCTCCAAGACACATACTT-TTGTAATT-GGATC-GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCANACANACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAAA]
[+] EMBL CD147999 [GTGCCTGCTCCAAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAA ]
[+] EMBL CD187447 [GTGCCTGCTCCAAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGAT ]
[-] EMBL CD186891 [ TGCCTGCTCCAAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATA ]
[+] EMBL AI977659 [ AAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCANACANACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAAA]
[+] EMBL AI977130 [ AAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGATTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTTCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCCGAAGGTCATGTAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGAg ]
[+] EMBL CD148994 [ GACACATACTTATTGTAATTCGTAGCGGGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGATGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATATTCTCCGATTTTATCTGCATTA ]
consensusID : consensus_10300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[ATATATGGTATTGTGATGGGTGGGGGGTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAC]
[-] EMBL BG931003 [ATATATGGTATTGTGATGGGTGGGGGGTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10300#0 AGGCCATTAATTCGGCACGAGGGATTACAAATATATTATTTATTGTTTACTAATGATTTT 60
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 ------------------------------------------------------------
consensus_10300#0 TAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCC 120
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 -----------------------GTGCCTGCTCCAAGACACATACTTTTGTAATTGGATC 37
consensus_10300#0 TCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTT 180
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTG 97
consensus_10300#0 GACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTG 240
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 AAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTG 157
consensus_10300#0 CATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGT 300
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 CATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGT 217
consensus_10300#0 TTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCA 360
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 TTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCA 277
consensus_10300#0 TTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCG 420
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 TTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCG 337
consensus_10300#0 AAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCC 480
consensus_10300#2 ------------------------ATATATGGTATTGTGATGGG-----TGGGGGGTCCC 31
consensus_10300#1 AAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCC 397
***** *** * * * ** ****
consensus_10300#0 GAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAA 540
consensus_10300#2 GAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAA 91
consensus_10300#1 GAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAA 457
************************************************************
consensus_10300#0 CGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGAT 600
consensus_10300#2 CGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGAT 151
consensus_10300#1 CGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCANACANACTGGGCATAGAT 517
****************************************** *** *************
consensus_10300#0 ATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCT 660
consensus_10300#2 ATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCT 211
consensus_10300#1 ATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAAA--------------- 562
********************************************
consensus_10300#0 GTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGA 720
consensus_10300#2 GTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGA 271
consensus_10300#1 ------------------------------------------------------------
consensus_10300#0 TCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATAC 780
consensus_10300#2 TCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAC--------------------- 310
consensus_10300#1 ------------------------------------------------------------
consensus_10300#0 AAATGAAACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTAAGTA 840
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 ------------------------------------------------------------
consensus_10300#0 CTTGTAAATGTATATTTTGTAACCAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAA 900
consensus_10300#2 ------------------------------------------------------------
consensus_10300#1 ------------------------------------------------------------
consensus_10300#0 AAAANNNNNAAAAAAAAAAAAAAA 924
consensus_10300#2 ------------------------
consensus_10300#1 ------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||