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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 834 fasta sequence
[GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATTTCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCGACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA-AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG-CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGGA]
[-] EMBL CD121554 [GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATTTCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCGACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGT ]
[+] EMBL CD200143 [ CATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATA ]
[+] EMBL AI067868 [ CTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGGA]
[+] EMBL AI068134 [ CACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAACAAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAAT ]
[-] EMBL CD190211 [ GGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCGTCTCATGTCTCCGCA ]
[+] EMBL CD148509 [ GAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAGCTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGCCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAAATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTAGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTcg ]
[+] EMBL CD071554 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAA ]
[+] EMBL CD071629 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTAAACATACAA ]
[+] EMBL CD071749 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGT ]
[+] EMBL CD071738 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATG ]
[+] EMBL CD071740 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTNTATC ]
[-] EMBL CD119959 [ AACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAG ]
[-] EMBL CD200795 [ AATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTTGAGTGATCATGAAGTTTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAGAGTGGTACAGAAGAC AGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCT ]
consensusID : consensus_10303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence
[CCAGTAAAGAGGAGACTGCTCAAATACNAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGT-ATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGTACCGTAGACACCATATTTCTTCCCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAA-CTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCAAATATGGTCCTATCTATTAAACTTTGAGTCGCATTTTGTGTGGGGGCTCTCCAATTCAAAGTTGGTGTGGTATGATTCGTACCTGCAACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGCTCCACAG]
[-] EMBL CD201020 [CCAGTAAAGAGGAGACTGCTCAAATACNAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGT ATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGTACCGTAGACACCATATTTCTTCCCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAA CTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCAAATATGGTCCTATCTATTAAACTTTGAGTCGCATTTTGTGTGGGGGCTCTCCAATTCAAAGTTGGTGTGGTATGATTCGTACCTGCAACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGCTCCACAG]
[-] EMBL CD200888 [ aaTAAAGAGGAGCCGGGTCAAATAACAAATCTAGGTACTGGTCAGAATGGAAGGCCCCGTGAAGGTAATTAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATTTTCTCATGTCACCGCAAGGTACGGTAGACACCATATATCTTCNCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAATCTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCCAATATGGTCCTATCTATTAAACTTTGAGTCGCCTTTTGTGTGGGGGCTCTCCAATTCAAAATTGGTGTGGTATGATTCGGACCCGCCACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGGTCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10303#0 GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATT 60
consensus_10303#1 ------------------------------------------------------------
consensus_10303#0 TCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCG 120
consensus_10303#1 ------------------------------------------------------------
consensus_10303#0 ACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAG 180
consensus_10303#1 ----------------------------CCAGTAAAGAGGAGACTGCTCAAA--TACNAA 30
** ** ** ** * * * * *
consensus_10303#0 AGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCA 240
consensus_10303#1 ATCAAGTTACTGGTCAGATTGGATGG--CGCCGTGAAGGTATAAAATACAGAAGGAATGA 88
* *** **** * * * * ** *** * * ** * * *
consensus_10303#0 GCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAA 300
consensus_10303#1 ACTGTTTCTGGATATCATGGAGTCGGTCAA----TCTTCTCATGTCACCGCAAGGTACCG 144
***** * * * * ** * * * ** * * * * ** * *
consensus_10303#0 TATAAAAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATA 360
consensus_10303#1 TAGACACCATA-TTTCTTCCCCGTTTA------TTTTG------TGCTTTAGTCTAGAAA 191
** * * *** *** ** * ** * *** ** ** * * * ** *
consensus_10303#0 TGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCAC 420
consensus_10303#1 ---AAAATATGTTGATAACAAAAAACTAAAACCTGTT-TTTTTCATGGTCTGTCGTTTAT 247
* * * **** ** ***** * ** ** *** * * * * *
consensus_10303#0 TGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCG 480
consensus_10303#1 TTC--GTAAA----AGCTTGC--AGATAGTGACTCTGACATCTGATAGGATTA-ACATCT 298
* * ***** ** *** * *** * ** *** * **** * *
consensus_10303#0 CCGTGAAGGTATAAAATACAGAAGGAATGA--ACTGTTTCTGGATAT-CATGGAGTCGGT 537
consensus_10303#1 TCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGA 358
* * * * *** ** *** ** ** * * ** * * *
consensus_10303#0 CAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCAC---ATGTGGCAGGTCGAGT 594
consensus_10303#1 GAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGT 418
** ** ** * *** * ** ** ** * * * * *** * * ***
consensus_10303#0 -GATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAG 653
consensus_10303#1 TGACTACCTAACATGAATAACCAAATATGGTCCTATCTA--TTAAACTTTGA-GTCGCAT 475
** * * * * * * **** ** ** ** *** * * * *
consensus_10303#0 TCAGTTTGGAAAATAAACAACGATCTACAGCTGGTACAGAAGACAGTAGTGGAGGTATTG 713
consensus_10303#1 TTTGTGTGGGGGCT---CTCCAATTCAAAGTTGGTGTGGTATG-ATTCGTACCTGCAACC 531
* ** *** * * * ** * ** **** * * * * ** * *
consensus_10303#0 CAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATA 773
consensus_10303#1 TAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCT---TCAGCTCCACAG-------- 580
*** * ** *** * ** ***** * ** ** * *
consensus_10303#0 CAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGG 833
consensus_10303#1 ------------------------------------------------------------
consensus_10303#0 A 834
consensus_10303#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||