These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 773 fasta sequence [TGTCCGTTTACATCCATGAGTACTTTTTCAGGTGA---AAGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG-AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACACCCAGATATTAAAAGATAGACCACTGCGTGGGAAGATTGATCGTCAGGGTACCTCTGCTCCAGTAAACATACTTTA] [+] EMBL AI975398 [TGTCCGTTTACATCCATGAGTACTTTTTCAGGTGAAAGAAGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATA ] [+] EMBL CD157446 [ ACTTTTTCAGGTGA AAGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTCCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTCCTA ] [-] EMBL CD157445 [ TTTTTCAGGTGA AAGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTC ] [-] EMBL CD157440 [ AGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACATATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAATACGCAAAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCGTCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTC ] [+] EMBL CD196441 [ GAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTTACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAAGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTAGTTGTTCGACAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAACCCCAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTA ] [+] EMBL CD196618 [ GAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATAATTTAAATTGGCAGAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTTACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAAGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTAGTTGTTCGACAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAACCCCAACGAGTCTGTAAATATTGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCC ] [+] EMBL CD096161 [ TGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTTACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAA ] [+] EMBL CD159442 [ TGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACACCCAGATATTAAAAGATAGACCACTGCGTGGGAAGATTGATCGTCAGGGTACCTCTGCTCCAGTAAACATACTTTA] [+] EMBL CD159384 [ TGAAGGAGTTGTTTAAAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTTTTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGCAACATGGCAGAGGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTATAAGATAGACCAATGCGTGTGAAGATTGATCGTCAGGGTACTTCTGCTCCAGTAAACATACTGTA] [+] EMBL CD162547 [ GGGTTTGATGGACTTCAAGACACTCTAAGGCAGCACCAAAGGCTATTGAGACCCTGCATCGGTTTGAAGTTGGGGACCGAACGTTGGTTGCTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCT ] [+] EMBL CD090578 [ TTCAAGACACTCGAAGG AGCACAAAAAGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTAGTTGTTCGACGAGAGACTGCTCGTGATGCTGCTCGCTTATCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAACCCCAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAAAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAG ] [+] EMBL CD183104 [ gggaGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATT ] [+] EMBL BG932703 [ tgcgGGCCTTCTAAGTGATTCTACAAACCCCAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAAAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACA ] consensusID : consensus_10304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 417 fasta sequence [CAGGATGGATCAGACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATATCTACCGTGGGGTGCACACACGATGTCGACGGCTTTTCTTTCACATCCTTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGATGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTAAAAGATAGACCAATGCGTGTGAAGATTGATCGTCAGGGTACTCCTGCTCCAGTAAACATACTTTATCCTCCATCACAAAGAACAGGCTCATCTGGAATTCTGGGTTCCACTAGTTCAAT] [+] EMBL CD152668 [CAGGATGGATCAGACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATATCTACCGTGGGGTGCACACACGATGTCGACGGCTTTTCTTTCACATCCTTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGATGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTAAAAGATAGACCAATGCGTGTGAAGATTGATCGTCAGGGTACTCCTGCTCCAGTAAACATACTTTATCCTCCATCACAAAGAACAGGCTCATCTGGAATTCTGGGTTCCACTAGTTCAAT] [+] EMBL CD152670 [CAAGATGGATCAGACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATATCTACCGTGGGGTGCACACACGATGTCGACGGCTTTTCTTTCACATCCTTACGTCAGTAATCTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10304#0 TGTCCGTTTACATCCATGAGTACTTTTTCAGGTGAAAGTCAAGACGACCAAAGTTCTACG 60 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 AGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTG 120 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 AGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAG 180 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 GAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGA 240 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 AAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGGAGCACAAAAGGCTATT 300 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 GAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCT 360 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 CGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACA 420 consensus_10304#1 ------------------------------------------------CAGGATGGATCA 12 *** ** consensus_10304#0 AATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTA 480 consensus_10304#1 GACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATATCTACCGTGGGG 72 * * * *** * * ** * ** * ** ** ** ** consensus_10304#0 GGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTAT 540 consensus_10304#1 TGCACACACGATGTCGACGG-CTTTTCTTTCACATCCT-TACGTCAGTAATCTTGACTAT 130 * ** * ***** * ** * * * ********************* consensus_10304#0 AGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCG 600 consensus_10304#1 AGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCG 190 ************************************************************ consensus_10304#0 GTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAAT 660 consensus_10304#1 GTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGATGGCATATTAAAATTTTCGAAT 250 ************************************* ********************** consensus_10304#0 GCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACACCCAGATATTAAAAGATAGACCA 720 consensus_10304#1 GCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTAAAAGATAGACCA 310 ************************************* ********************** consensus_10304#0 CTGCGTGGGAAGATTGATCGTCAGGGTACCTCTGCTCCAGTAAACATACTTTA------- 773 consensus_10304#1 ATGCGTGTGAAGATTGATCGTCAGGGTACTCCTGCTCCAGTAAACATACTTTATCCTCCA 370 ****** ********************* ********************** consensus_10304#0 ----------------------------------------------- consensus_10304#1 TCACAAAGAACAGGCTCATCTGGAATTCTGGGTTCCACTAGTTCAAT 417 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||