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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 424 fasta sequence
[CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT-AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG-ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCGCCAGTT]
[+] EMBL CD132557 [CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTC ]
[+] EMBL AI976828 [ GACCTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAg ]
[+] EMBL CD124003 [ TGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA ]
[+] EMBL CD188170 [ GAAGCGTGGAAGGGGTGGTTCATCTGGCGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCGACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTG ]
[+] EMBL CD132601 [ GAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAAC ]
[+] EMBL CD132586 [ GAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTC ]
[-] EMBL CD180560 [ AAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTT AAGGCTCGGCAATTACCGGTC ]
[+] EMBL CD135706 [ GGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCA ]
[+] EMBL CD113619 [ TGGAAAGTTCCGAATTTCATTGGCTCTTCCCGTTGGAGCTATAATGAACTGTGCTGACAATAGAGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCCTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGCTTGCTCAGTT AAAAAAGGGAAACCAAAACTAAGGACAAAAGTGTTGTATGCTGTACTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCAAGGATAACGCTGGTGTG ATTGTCAACAACTAGGGAGAACTTAAAGGCTCGGCA ]
[-] EMBL CD113582 [ GGAAAGTTCTGAATTTCACTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGGCAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGCATTGTCAACAGCAAGGGAGAACTTAAAGGCTCGGCAA ]
[-] EMBL CD113616 [ GGAAAGTTCTGAATTTCACTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGCATTGTCAACAACAAGGGAGAACTTAAAGGCTTGGCAA ]
[-] EMBL CD141139 [ ATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTCGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGG ]
[-] EMBL CD202485 [ GAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAAGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACCAGGGAGAACTCAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAA ]
[+] EMBL CD148684 [ GTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCGCCAGTT]
consensusID : consensus_10307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAGTGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGATTG]
[+] EMBL CD197884 [CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAGTGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10307#0 CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATT 60
consensus_10307#1 ------------------------------------------------------------
consensus_10307#0 TCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAAT 120
consensus_10307#1 -CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAAT 59
*** * ** * * ** ** * *****************************
consensus_10307#0 TTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCA 180
consensus_10307#1 TTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCA 119
************************************************************
consensus_10307#0 ACTGGTGACCTCATTGTTTGCTCAGTTAAAAAA-GGGAAACCAGAACTAAGGAAAAAA-G 238
consensus_10307#1 ACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAG 179
********************************* ************************ *
consensus_10307#0 TGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA 298
consensus_10307#1 TGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA 239
************* **********************************************
consensus_10307#0 TTTATTTCGAGGATAACGCTGGTGTGATTGTCAACAACAAGGGAGAACTTAAAGGCTCGG 358
consensus_10307#1 TTTATTTCGAGGATAACGCTGGTGTGATTG------------------------------ 269
******************************
consensus_10307#0 CAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCG 418
consensus_10307#1 ------------------------------------------------------------
consensus_10307#0 CCAGTT 424
consensus_10307#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||