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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 648 fasta sequence
[TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATAAAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA-AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAG-AAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGATGACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAACGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG]
[+] EMBL CD147092 [TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATAAAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAG AAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGAT ]
[+] EMBL CD141564 [ GGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAA ]
[-] EMBL CD147179 [ AATCAGCAATTATTTAATTACAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGCCAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGGCAATAAACCATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGATGACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAACGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG]
consensusID : consensus_10312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 502 fasta sequence
[GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[+] EMBL CD122378 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTT ]
[+] EMBL CD122392 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[+] EMBL CD122340 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[+] EMBL CD122412 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTCTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATACATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTNTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[+] EMBL CD122376 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTGAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[+] EMBL CD122268 [GGACAAGAGGACAAATGTTAAACAGTCAAAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGACTCGGCTATATCCATACGTNTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[-] EMBL CD122401 [ GACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[-] EMBL CD122348 [ GACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCAT AAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[-] EMBL CD122414 [ GACAAGAGGACAAATGTTANATAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGGCTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[+] EMBL CD197226 [ TAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTNAGTATTCCAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTAT ]
[-] EMBL CD122405 [ CAGTCAGAATNATCTATGTTTA TTTTCCAGTTTTAAAGTTAAGCTGACCCAACAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAACTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[-] EMBL CD122294 [ ACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATTAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10312#0 TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATA 60
consensus_10312#1 ------------------------------------------------------------
consensus_10312#0 AAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAG 120
consensus_10312#1 ---------------------------------------------------GGACAAGAG 9
*********
consensus_10312#0 GACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTG 180
consensus_10312#1 GACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTG 69
************************************************************
consensus_10312#0 ACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAA 240
consensus_10312#1 ACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAA 129
************************************************************
consensus_10312#0 ATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTG 300
consensus_10312#1 ATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTG 189
************************************************************
consensus_10312#0 AATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTC 360
consensus_10312#1 AATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTC 249
************************************************************
consensus_10312#0 ATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATA 420
consensus_10312#1 ATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATA 309
************************************************************
consensus_10312#0 TTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGA 480
consensus_10312#1 TTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGA 369
************************************************************
consensus_10312#0 TGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGAT 540
consensus_10312#1 TGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGC--TGTA 427
************* * * * * * * * ** * * * ** **
consensus_10312#0 GACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAA 600
consensus_10312#1 GATGAATCGGCTATA------TCCATACGTTTA---TCAGATTCATATGATTTT---AAA 475
** ** * * * * * *** ** * * * ******** * * ***
consensus_10312#0 CGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG 648
consensus_10312#1 CGTA--GACG-AGCGAAATCTTCAAAAATT------------------ 502
**** ** *** * ** ** * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||