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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1160 fasta sequence
[CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTATCAGGTGTTGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAGACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACGTATCAAGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAATTACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACT-AAGAAGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGAAATGGCAGAAGAAAAATTAGAAT]
[-] EMBL CD123011 [CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACGATGGATTTATCTACTTCAAGCGTTCTATCAG ]
[-] EMBL CD161329 [CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAG ]
[-] EMBL CD200963 [ GGGAAAAACAATGGTACGGTTCAAGGAAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGT ]
[+] EMBL CD095997 [ GAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGAATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATACATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGA ]
[+] EMBL CD085995 [ AAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGA ]
[+] EMBL CD178570 [ GGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTT TTCt ]
[+] EMBL CD167757 [ TACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTATCAGGTGTTGTTAGTTCATCT ]
[-] EMBL CD188993 [ CCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATA ]
[+] EMBL CD117227 [ TGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAACCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAcctt ]
[-] EMBL CD117547 [ GGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAccttc ]
[-] EMBL CD117495 [ GGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAccttc ]
[+] EMBL CD068314 [ tgttaCTCCCAACAAATCCACTGAAAGTAAACCTGTAAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTAGTATCAGGTGTAGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAGACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACG ]
[-] EMBL CD132131 [ ATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGGAGATAAAACCAGAATACAAGAATTAGAACGTATCAAGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAATTACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACT AAGAAGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGAAATGGCAGAAGAAAAATTAGAAT]
[+] EMBL CD195610 [ aGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACTAAAGAGGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACTTTA ]
consensusID : consensus_10314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence
[CCTGAAATCAGAAAAGCGTCACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA]
[+] EMBL CD071643 [CCTGAAATCAGAAAAGCGTCACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10314#0 CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAG 60
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 TGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTG 120
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 GAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAG 180
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 GGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTA 240
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 CTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTAT 300
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 CAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTA 360
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 AACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTC 420
consensus_10314#1 -----------------------------------------CCTGAAATCAGAAAAGCGT 19
******** *****
consensus_10314#0 CAC--CTGAAATCAGAAAAGCGTCACA-AATCCCATCAACTGGATCCAATCCAGACCTGG 477
consensus_10314#1 CACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGG 79
*** * ** * * * * *******************************
consensus_10314#0 TACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAA 537
consensus_10314#1 TACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA-------------------------- 113
************************ *******
consensus_10314#0 GTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCAT 597
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 CAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTG 657
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 AAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTG 717
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 AAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTAT 777
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 CAGGTGTTGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAG 837
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 ACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTG 897
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 AAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACGTATCA 957
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 AGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAAT 1017
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 TACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACTAAGAAGCATTTGATCG 1077
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 TTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGA 1137
consensus_10314#1 ------------------------------------------------------------
consensus_10314#0 AATGGCAGAAGAAAAATTAGAAT 1160
consensus_10314#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||