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Schistosoma mansoni
cluster # 10314 cluster # 10314       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10314#0 length = 1160 sequences # 14  
consensus_10314#1 length = 113 sequences # 1  

consensusID : consensus_10314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1160
fasta sequence
                              [CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTATCAGGTGTTGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAGACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACGTATCAAGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAATTACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACT-AAGAAGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGAAATGGCAGAAGAAAAATTAGAAT]

[-] EMBL CD123011             [CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACGATGGATTTATCTACTTCAAGCGTTCTATCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD161329             [CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD200963             [                                                                                                                                                           GGGAAAAACAATGGTACGGTTCAAGGAAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD095997             [                                                                                                                                                             GAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGAATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATACATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD085995             [                                                                                                                                                              AAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD178570             [                                                                                                                                                                       GGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTT TTCt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD167757             [                                                                                                                                                                                            TACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTATCAGGTGTTGTTAGTTCATCT                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD188993             [                                                                                                                                                                                                                                                             CCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATA                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD117227             [                                                                                                                                                                                                                                                                                 TGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAACCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAcctt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD117547             [                                                                                                                                                                                                                                                                                  GGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAccttc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD117495             [                                                                                                                                                                                                                                                                                  GGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAccttc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD068314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               tgttaCTCCCAACAAATCCACTGAAAGTAAACCTGTAAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTAGTATCAGGTGTAGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAGACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACG                                                                                                                                                                                                                 ]
[-] EMBL CD132131             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGGAGATAAAACCAGAATACAAGAATTAGAACGTATCAAGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAATTACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACT AAGAAGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGAAATGGCAGAAGAAAAATTAGAAT]
[+] EMBL CD195610             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                aGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACTAAAGAGGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACTTTA                               ]


>consensus_10314#0 CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAG TGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTG GAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAG GGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTA CTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTAT CAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTA AACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTC CACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTAC AAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTA AACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAA CTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAG TTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAA ATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTATCAG GTGTTGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAGACA CAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAG CCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACGTATCAAGA TTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAATTAC AACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACTAAGAAGCATTTGATCGTTA TCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGAAAT GGCAGAAGAAAAATTAGAAT



consensusID : consensus_10314#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 113
fasta sequence
                              [CCTGAAATCAGAAAAGCGTCACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA]

[+] EMBL CD071643             [CCTGAAATCAGAAAAGCGTCACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA]


>consensus_10314#1 CCTGAAATCAGAAAAGCGTCACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACT GGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10314#0      CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAG 60
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      TGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTG 120
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      GAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAG 180
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      GGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTA 240
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      CTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTAT 300
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      CAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTA 360
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      AACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTC 420
consensus_10314#1      -----------------------------------------CCTGAAATCAGAAAAGCGT 19
                                                                ********   *****   

consensus_10314#0      CAC--CTGAAATCAGAAAAGCGTCACA-AATCCCATCAACTGGATCCAATCCAGACCTGG 477
consensus_10314#1      CACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGG 79
                       ***  *    **   *    * *   *  *******************************

consensus_10314#0      TACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAA 537
consensus_10314#1      TACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA-------------------------- 113
                       ************************   *******                          

consensus_10314#0      GTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCAT 597
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      CAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTG 657
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      AAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTG 717
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      AAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTAT 777
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      CAGGTGTTGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAG 837
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      ACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTG 897
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      AAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACGTATCA 957
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      AGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAAT 1017
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      TACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACTAAGAAGCATTTGATCG 1077
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      TTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGA 1137
consensus_10314#1      ------------------------------------------------------------
                                                                                   

consensus_10314#0      AATGGCAGAAGAAAAATTAGAAT 1160
consensus_10314#1      -----------------------
                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)