These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1160 fasta sequence [CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTATCAGGTGTTGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAGACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACGTATCAAGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAATTACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACT-AAGAAGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGAAATGGCAGAAGAAAAATTAGAAT] [-] EMBL CD123011 [CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACGATGGATTTATCTACTTCAAGCGTTCTATCAG ] [-] EMBL CD161329 [CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAGTGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTGGAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAG ] [-] EMBL CD200963 [ GGGAAAAACAATGGTACGGTTCAAGGAAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGT ] [+] EMBL CD095997 [ GAAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGAATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATACATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGA ] [+] EMBL CD085995 [ AAAAACAATGGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGA ] [+] EMBL CD178570 [ GGTACGGTTCAAGGGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTT TTCt ] [+] EMBL CD167757 [ TACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTACTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTATCAGGTGTTGTTAGTTCATCT ] [-] EMBL CD188993 [ CCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAAGTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATA ] [+] EMBL CD117227 [ TGGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAACCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAcctt ] [-] EMBL CD117547 [ GGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAccttc ] [-] EMBL CD117495 [ GGATTTATCTACTTCAAGCGTTCTATCAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTAAACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTCCACCTGAAATCAGAAAAGCGTCACAAccttc ] [+] EMBL CD068314 [ tgttaCTCCCAACAAATCCACTGAAAGTAAACCTGTAAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCATCAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTGAAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTGAAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTAGTATCAGGTGTAGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAGACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACG ] [-] EMBL CD132131 [ ATCTACGCGCCGAAATAACAACACTACATGATCAAATTGAAGCCTTAAAAATGAAACGAGAAGGAGATAAAACCAGAATACAAGAATTAGAACGTATCAAGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAATTACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACT AAGAAGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGAAATGGCAGAAGAAAAATTAGAAT] [+] EMBL CD195610 [ aGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACTAAAGAGGCATTTGATCGTTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACTTTA ] consensusID : consensus_10314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence [CCTGAAATCAGAAAAGCGTCACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA] [+] EMBL CD071643 [CCTGAAATCAGAAAAGCGTCACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGGTACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10314#0 CTTCAAGGTTATGGGTTAATATGGCTGAAGGGAAGCTAAAAATCGGTTCTCGTGTTGAAG 60 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 TGACGGGAAAGGATGTTGTTGGTACCATAGCATATATTGGAGCAACACAATTTTCTCCTG 120 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 GAAAATGGGTAGGAGTGATACTAGAGGAGTCGAAAGGGAAAAACAATGGTACGGTTCAAG 180 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 GGAAACGCTACTTTACTTGTGAAGAGAACCATGGAATCTTTGTGCGGCCATCCCAGCTTA 240 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 CTCTTCTGGATGACCAAGATGGATCAAGCACAATGGATTTATCTACTTCAAGCGTTCTAT 300 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 CAGAATCAGGCACAACCTCAGAATCTAATGCATCTAAGTTATCATTTGGTGAAACTCCTA 360 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 AACGTACGGGTTCTTCAACTTCTTTGTCCAGCAGTTTAAAACCTGAAATTGCAAAAGGTC 420 consensus_10314#1 -----------------------------------------CCTGAAATCAGAAAAGCGT 19 ******** ***** consensus_10314#0 CAC--CTGAAATCAGAAAAGCGTCACA-AATCCCATCAACTGGATCCAATCCAGACCTGG 477 consensus_10314#1 CACAACCTTCATTGAAGCGACCTAGTATGATCCCATCAACTGGATCCAATCCAGACCTGG 79 *** * ** * * * * ******************************* consensus_10314#0 TACAAGGTAATGTAGCGCCAATTTCGAAAAGTGAAAGTCCTCCCAACAAATCCACTGAAA 537 consensus_10314#1 TACAAGGTAATGTAGCGCCAATTTTCGAAAGTGA-------------------------- 113 ************************ ******* consensus_10314#0 GTAAACCTGTTAAAGAATCCATACAACCTAGTGGTGATACATTACCGAAAACCATTCCAT 597 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 CAACTATAAAAACAAGTGATTCTAAACTACCGACTACTACTGATGGCAGCAAAATACCTG 657 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 AAGTTTCAACCATTACAGGAGCTAGTGATATTAAAATAACTTCACAGAAACTAGAGCTTG 717 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 AAAATATATCTATTAAGCCTAAGGACAGTTCTCATAAAATACCAAGATCTTCTGTTGTAT 777 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 CAGGTGTTGTTAGTTCATCTGCTGTTGTAGCAAGTGACGGTGGTGGTACTCACTCACCAG 837 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 ACACAGAATTGGAGCTAACTAATCTACGCGCCGAAATAACAACACTACATGATCAAATTG 897 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 AAGCCTTAAAAATGAAACGAGAAGAAGATAAAACCAGAATACAAGAATTAGAACGTATCA 957 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 AGATTCAATTTACTCAACTCGAAGAAAATCGACGTCTAATGAGAGAACAAGCAGCCGAAT 1017 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 TACAACGTGAAATCGCACAATTAAAAACAGAAAAAGCTGAAACTAAGAAGCATTTGATCG 1077 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 TTATCGTGATGAAGTAGCTGAAATGGTTGAAAGTGTAGAAATGGCTACATTAGATAAAGA 1137 consensus_10314#1 ------------------------------------------------------------ consensus_10314#0 AATGGCAGAAGAAAAATTAGAAT 1160 consensus_10314#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||