cluster # 10318

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Schistosoma mansoni
cluster # 10318 cluster # 10318 Sequences # 15 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10318#0 length = 798 sequences # 14

consensus_10318#1 length = 511 sequences # 1

consensusID : consensus_10318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 798
fasta sequence

                              [GGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTACGAATTTGGATAATAATACTTTTTGTGGATCAAAACATACATCATTTCACTGGTCAGAAGAGTTCAAAATTTTAACAACTTTCCCAATGGCAATTGTTTCTCCTTTATCACGTAAAGTGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCTAGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATAAACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAGACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAGGATTGATATCTTCCTCGTCAATATTCCTCAGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCTCCAATATACACCTGCATAACTTCCACGTTCACTTTATTGGGTAATAATACTATCGTTTGGCCTTTCGATACTGATCCAGATTCAACTTTTCCAGAGGCAAATGTACCCATTTCTTTGTATCTATCGGTGACAGTAAATCTTAAAGGGCCGTCCGTATTCCGTGGAAAGCTGGGGAGATTATCGAGGTGCTCCAGTAAACTAGGACCTCTATACCACGAGCAAACTGATTCGTCGTGGAATATCTCGAAGTACGCTCCA]

[+] EMBL AI067974             [GGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTACGAATTTGGATAATAATACTTTTTGTGGATCAAAACATACATCAGTTCACTGGTCAGAAGAGTTCAAAATTTTAACAACTTTCCCAATGGCAATTGTTTCTCCTTTATCACGTAAAGTGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCTAGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATAAACCTGGGATATAGTTTTGTTTTTTCATTAGTCATTTTGTCTAATAGACAGATGATCTTACGTATGGATACTTCGTTCAGACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATACATTTGAAACCTGGCAGAAATTATTCGGGGAACATAATCAAAAGCCAGGATTGATATCTTCCTCGTCAATATTCCTCAGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCTCCAATATACACCTGCATAACTTCCACGTTCACT                                                                                                                                                                                                                                 ]
[+] EMBL AI067070             [                                          GATAATAATACTTTTTGTGGATCAAAACATACATCATTTCACTGGTCAGAAGAGTTCAAAATTTTAACAACTTTCCCAATGGCAATTGTTTCTCCTTTATCACGTAAAGTGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCTAGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AI066971             [                                          GATAATAATACTTTTTGTGGATCAAAACATACATCATTTCACTGGTCAGAAGAGTTCAAAATTTTAACAACTTTCCCAATGGCAATTGTTTCTCCTTTATCACGTAAAGTGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCTAGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD084158             [                                                 ATACTTTTTGTGGATCAAAACATACATCATTTCACTGGTCAGAAGAGTTCAAAATTTTAACAACTTTCCCAATGGCAATTGTTTCTCCTTTATCACGTAAAGTGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCTAGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATAAACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAGACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAGGATTGATATCTTCCTCGTCAATATTCCTCAGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCTCCAATATACACCTGCATAACTTCCACGTTCACc                                                                                                                                                                                                                                 ]
[+] EMBL CD159639             [                                                                                                   AAAATTTTAACAACTTTCCCAATGGCAATTGTTTCTCCTTTATCACGTAAAGTGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCTAGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATAAACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAGACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAG                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD189468             [                                                                                                                                                                              TTCCGAAATGTTTCTAGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATAAACCTGGGATATAGTTTTG TTTTTCATTAGTCTNTTTGTCTAATAGACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAGGATTGATATCTTCCTCGTCAATATTCCTCAGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCTCCAATATACACCTGCATAACTTCCACGTTCACTTTATTGGGTAATAATACTATCGTTTGGCCTTTCGATACTGATCCAGATTCAACTTTTCCAGAGGCAAATGTACCCATTTCTTTGTATCTATCGGTGACAGTAAATCTTAAAGGGCCGTCCGTATTCCGTGGAAAGCTGGGGAGATTATCG                                                                           ]
[-] EMBL CD122599             [                                                                                                                                                                                                                                   AGCAGCATCACCTGATTTGATAAACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAGACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAGGATTGATATCTTCTTCGTCAATATTCCTCAGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCTCCAATATACACCTGCATAACTTCCACGTTC                                                                                                                                                                                                                                    ]
[-] EMBL CD131902             [                                                                                                                                                                                                                                                                    TAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAGACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTAAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGCAACAAAAACAAAAGCCAGGATTG                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD084270             [                                                                                                                                                                                                                                                                                  CATTAGTCTTTTTGTCTAATAGACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAGGATTGATATCTTCTTCGTCAATATTCCTCAGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCTCCAATATACACCTGCATAACTTCCACGTTCACTTTATTGGGTAATAATACTATCGTTTGGCCTTTCGATACTGATCCAGATTCAACTTTTCCAGAGGCAAATGTACCCATTTCTTTGTATCTATCGGTGACAGTAAATCTTAAAGGGCCGTCCGTATTCCGTGGAAAGCTGGGGGGATTATCGAGGTGCTCCAGTAAACTAGGACCTCTATACCACGAGCAAACTGATTCGTCGTGGAATATCTCGAAGTACGCTCCA]
[+] EMBL AI067270             [                                                                                                                                                                                                                                                                                                            ATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAGGATTGATATCTTCCTCGTCAATATTCCTCAGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCCCCAATATACACCTGCATAACTTCCACGTTCACTTTACTG                                                                                                                                                                                                                           ]
[+] EMBL AI067818             [                                                                                                                                                                                                                                                                                                            ATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCA                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AI067664             [                                                                                                                                                                                                                                                                                                            ATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGC                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AI067741             [                                                                                                                                                                                                                                                                                                            ATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATT                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AI068163             [                                                                                                                                                                                                                                                                                                            ATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTACATGTGCATC                                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_10318#0
GGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTACGAATTTGGATAATAATACTTTTTGT
GGATCAAAACATACATCATTTCACTGGTCAGAAGAGTTCAAAATTTTAACAACTTTCCCA
ATGGCAATTGTTTCTCCTTTATCACGTAAAGTGAAACGTCCTAGTGGTGGAAAGTTCCGA
AATGTTTCTAGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCT
GATTTGATAAACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAGACAG
ATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAAC
CCTGAAGAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAA
ACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAGGATTGATATCTTCCTCGTCA
ATATTCCTCAGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCT
CCAATATACACCTGCATAACTTCCACGTTCACTTTATTGGGTAATAATACTATCGTTTGG
CCTTTCGATACTGATCCAGATTCAACTTTTCCAGAGGCAAATGTACCCATTTCTTTGTAT
CTATCGGTGACAGTAAATCTTAAAGGGCCGTCCGTATTCCGTGGAAAGCTGGGGAGATTA
TCGAGGTGCTCCAGTAAACTAGGACCTCTATACCACGAGCAAACTGATTCGTCGTGGAAT
ATCTCGAAGTACGCTCCA

consensusID : consensus_10318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [AAAATACTTAAATTAGTGCAAGTGGAGACTTGACAATTTCAAATCACATTCAAATGAAAAAGATCAAACATAAATACCATATTTACGAATTTGGATAATAATACTTTTTGGGGATCAAAACATACATCATTTCACTGGTCAAAAAAGTTCAAAATTTTAACAACTTTCCCAATGGCAATTGTTTCTCCCTTATCACGTAAAGGGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCTAAACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATAAACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAAACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAAAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAG]

[+] EMBL CD076560             [AAAATACTTAAATTAGTGCAAGTGGAGACTTGACAATTTCAAATCACATTCAAATGAAAAAGATCAAACATAAATACCATATTTACGAATTTGGATAATAATACTTTTTGGGGATCAAAACATACATCATTTCACTGGTCAAAAAAGTTCAAAATTTTAACAACTTTCCCAATGGCAATTGTTTCTCCCTTATCACGTAAAGGGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCTAAACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATAAACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAAACAGATGATCTTACGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAAAAATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAGAAATTATTCGGGGAACAAAAACAAAAGCCAG]




>consensus_10318#1
AAAATACTTAAATTAGTGCAAGTGGAGACTTGACAATTTCAAATCACATTCAAATGAAAA
AGATCAAACATAAATACCATATTTACGAATTTGGATAATAATACTTTTTGGGGATCAAAA
CATACATCATTTCACTGGTCAAAAAAGTTCAAAATTTTAACAACTTTCCCAATGGCAATT
GTTTCTCCCTTATCACGTAAAGGGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCT
AAACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATA
AACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAAACAGATGATCTTA
CGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAAAA
ATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAG
AAATTATTCGGGGAACAAAAACAAAAGCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10318#0      --------------------------------------------------GGCATGTTTT 10
consensus_10318#1      AAAATACTTAAATTAGTGCAAGTGGAGACTTGACAATTTCAAATCACATTCAAATGAAAA 60
                                                                            ***    

consensus_10318#0      TTTTTTTTTTTTTTTTTTTT-TTTACGAATTTGGATAATAATACTTTTTGTGGATCAAAA 69
consensus_10318#1      AGATCAAACATAAATACCATATTTACGAATTTGGATAATAATACTTTTTGGGGATCAAAA 120
                          *      *   *    * ***************************** *********

consensus_10318#0      CATACATCATTTCACTGGTCAGAAGAGTTCAAAATTTTAACAACTTTCCCAATGGCAATT 129
consensus_10318#1      CATACATCATTTCACTGGTCAAAAAAGTTCAAAATTTTAACAACTTTCCCAATGGCAATT 180
                       ********************* ** ***********************************

consensus_10318#0      GTTTCTCCTTTATCACGTAAAGTGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCT 189
consensus_10318#1      GTTTCTCCCTTATCACGTAAAGGGAAACGTCCTAGTGGTGGAAAGTTCCGAAATGTTTCT 240
                       ******** ************* *************************************

consensus_10318#0      AGACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATA 249
consensus_10318#1      AAACAAATCGGTCCGCCTAAAACCTCAAATCGTACAATAGCAGCATCACCTGATTTGATA 300
                       * **********************************************************

consensus_10318#0      AACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAGACAGATGATCTTA 309
consensus_10318#1      AACCTGGGATATAGTTTTGTTTTTTCATTAGTCTTTTTGTCTAATAAACAGATGATCTTA 360
                       ********************************************** *************

consensus_10318#0      CGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAGAA 369
consensus_10318#1      CGTATGGATACTTCTTTCATACATGTGTGAATGTGAAGCACAGCCATAAACCCTGAAAAA 420
                       ********************************************************* **

consensus_10318#0      ATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAG 429
consensus_10318#1      ATTATGGAGTCGTACTGCATAATCAGTAGATGTGCATCAAATAGATTTGAAACCTGGCAG 480
                       ************************************************************

consensus_10318#0      AAATTATTCGGGGAACAAAAACAAAAGCCAGGATTGATATCTTCCTCGTCAATATTCCTC 489
consensus_10318#1      AAATTATTCGGGGAACAAAAACAAAAGCCAG----------------------------- 511
                       *******************************                             

consensus_10318#0      AGTTTTAACTTACAATGTTCTCCAGCAGAAGCACAATTGACTTCTACATCTCCAATATAC 549
consensus_10318#1      ------------------------------------------------------------
                                                                                   

consensus_10318#0      ACCTGCATAACTTCCACGTTCACTTTATTGGGTAATAATACTATCGTTTGGCCTTTCGAT 609
consensus_10318#1      ------------------------------------------------------------
                                                                                   

consensus_10318#0      ACTGATCCAGATTCAACTTTTCCAGAGGCAAATGTACCCATTTCTTTGTATCTATCGGTG 669
consensus_10318#1      ------------------------------------------------------------
                                                                                   

consensus_10318#0      ACAGTAAATCTTAAAGGGCCGTCCGTATTCCGTGGAAAGCTGGGGAGATTATCGAGGTGC 729
consensus_10318#1      ------------------------------------------------------------
                                                                                   

consensus_10318#0      TCCAGTAAACTAGGACCTCTATACCACGAGCAAACTGATTCGTCGTGGAATATCTCGAAG 789
consensus_10318#1      ------------------------------------------------------------
                                                                                   

consensus_10318#0      TACGCTCCA 798
consensus_10318#1      ---------