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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1030 fasta sequence
[TNNTGCGGCCGCCTCCAACATCAGAATGGTAACAGTCAAACATAATTCGAAATGTTTGCAAGAAGCGATAAAATTACATTTTGAGAGCCTGAGATTAAAAACATGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGAAAAT-CAGTTGAAAAATTATTTA-GTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCCTGCAAGCAATTACATAGAAGTTTGTTTTAATATCTTTAGAAGTGGAAAGTAAAAGTCTGAATCTTCTTTTAGAACGCACTATGAAAAAACGCTTGAAAAGGTTCGATCTTAGTTATGTCAGCCAGTCAGTCGTAACGTTCTAGCCAAATAAACAAAAGTTTCTGTTACTGTATTTGAGTTACAAGTTTGACGGAAATTTAGGAAGGAGCGTTGTAATTACATTCACAACTAGCATAATGTGTTTATGTCCACTGTGTTTTGATATAAATCGATTCATTTTCGGTCAAATCAGGAAAACATTGTTTTGAGATTAGTTGGCATATAAGCTCAATTACTGCTTTGTGCCACTTTTATAAAAGTTTTTATTGGGGTTTGCGAACAGTTAATCTCATTTTGGATCGTATTCAGATTGAC]
[+] EMBL CD077096 [TNNTGCGGCCGCCTCCAACATCAGAATGGTAACAGTCAAACATAATTCGAAATGTTTGCAAGAAGCGATAAAATTACATTTTGAGAGCCTGAGATTAAAAACATGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGAAAAT CAGTTGAAAAATTATTTA GTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCANATCAAATTGTGTTTTG ]
[-] EMBL CD161790 [ TGTGAGTAAATGTTGAAAATTACGCGATATATCTTATAATGCATGAAAAT CAGTTGAAAAATTATNTA GTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTCCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAAT ]
[-] EMBL CD161837 [ TGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGANAAT CAGTTGAAAAATTATTTA GTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAAT ]
[-] EMBL CD161778 [ tgGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGAAAATCCAGTTGAANAATTATTTAGGTCCAAGAACTTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCGTCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAAT ]
[+] EMBL CD076174 [ AAATTACACAATATATCTTATAATGCATGAAAAT CAGTTGAAAAATTATTTA GTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTA ]
[-] EMBL CD082576 [ GGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTT TNTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCCTGCAAGCAATTACATAGAAGTTTGTTTTAATATCTTTAGAAGTGGAAAGTAAAAGTCTGAATCTTCTTTTAGAACGCACTATGAAAAAACGCTTGAAAAGGTTCGATCTTAGTTATGTCAGCCAGTCAGTCGTAACGTTCTAGCCAAATAAACAAAAGTTTCTGTTACTGTATTTGAGTTACAAGTTTGACGGAAATTTAGGAAGGAGCGTTGTAATTACATTCACAACTAGCATAATGTGTTTATGTCCACTGTGTTTTGATATAAATCGATTCATTTTCGGTCAAATCAGGAAAACATTGTTTTGAGATTAGTTGGCATATAAGCTCAATTACTGCTTTGTGCCACTTTTATAAAAGTTTTTATTGGGGTTTGCGAACAGTTAATCTCATTTTGGATCGTATTCAGATTGAC]
[+] EMBL CD076175 [ CCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCCTGCAAGCAATTACATAGAAGTTTGTTTTAATATCTTTAGAAGTGGAAAGTAAAAGTCTGAATCTTCTTTTAGAACGCACTATGAAAAAACGCTTGAAAAGGTTC ]
[-] EMBL CD161947 [ AAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAAT ]
consensusID : consensus_10319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 647 fasta sequence
[AGTTATAGATTATTACAGTCAAACATAATTCGAAAATGTTTGCAAGAAGCGATAAAATTACATTTTGAGAGCCTGAGATTAAAAACATGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGAAAATCAGTTGAAAAATTATTTAGTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCC-TGTGTAACAATCTAAATTGTACTAGGTGGAGTTAGTTCCAGATGGCC]
[+] EMBL CD073727 [AGTTATAGATTATTACAGTCAAACATAATTCGAAAATGTTTGCAAAAAGCGATAAAATTACATTTTGAGAGCCTGAAATTAAAAACATGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGAAAATCAGTTGAAAAATTATTTAGTCCAAAAAACTTTCTGGATATCGAAGTGTTCAGTGAAAGTGCTCAAATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTTTACGTTTCTCCCACTCTACTTGAAACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTTTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAAAGGTATTGACAGCCACTTCAAGATCGTTCGGGGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAG ]
[-] EMBL CD079456 [ GTTATAGATTATTACAGTCAAACATAATTCGANAATG TTGCAAGAAGCGATANAATTACATTTTGAGAGCCTGAGATTAAAAACATGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGAAAATCAGTTGAAAAATTATTTAGTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCCNTGTGTAACAATCTAAATTGTACTAGGccctc ]
[+] EMBL CD073179 [ TACAGTCAAACATAATTCGAAAATGTTTGCAAGAAGCGATAAAATTACATTTTGAGAGCCTGAGATTAAAAACATGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGAAAATCAGTTGAAAAATTATTTAGTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTT ]
[-] EMBL CD078716 [ CAGTC AACATAATTCG AAATGTTTGCAAGAAGCGATAAAATTACATTTTGAGAGCCTGAGATTAAAAACATGTGAGTAAATGTTGGAAATTACACAATATATCTTATAATGCATGAAAATCAGTTGAAAAATTATTTAGTCCAAGAAACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCC TGTGTAACAATCTAAATTGTACTAGGTGG ]
[-] EMBL CD083913 [ AGTGCTCAGATAGTTGTTAAATTCAATTATCCTTTGTTTATGCGATTTATCTGCCGTTGGTAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTCTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCC TGTGTAACAATCTAAATTGTACTAGGTGGAGTTAGTTCCAGATGGCC]
[+] EMBL CD194601 [ ATTATCCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCTACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCC TGTGTAACAATCTAAATTGTACTAGGTGGAGTTAGT ]
[+] EMBL CD135183 [ ACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTTCTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAGATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGATTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGCCAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTTTGGTTCTTGTATCAGCC TGTGTAACAATCTAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10319#0 TNNTGCGGCCGCCTCCAACATCAGAATGGTAACAGTCAAACATAATTCGAAA-TGTTTGC 59
consensus_10319#1 -----------------AGTTATAGATTATTACAGTCAAACATAATTCGAAAATGTTTGC 43
* * ** * ********************* *******
consensus_10319#0 AAGAAGCGATAAAATTACATTTTGAGAGCCTGAGATTAAAAACATGTGAGTAAATGTTGG 119
consensus_10319#1 AAGAAGCGATAAAATTACATTTTGAGAGCCTGAGATTAAAAACATGTGAGTAAATGTTGG 103
************************************************************
consensus_10319#0 AAATTACACAATATATCTTATAATGCATGAAAATCAGTTGAAAAATTATTTAGTCCAAGA 179
consensus_10319#1 AAATTACACAATATATCTTATAATGCATGAAAATCAGTTGAAAAATTATTTAGTCCAAGA 163
************************************************************
consensus_10319#0 AACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTAT 239
consensus_10319#1 AACTTTCTGGATATCGAAGTGTTCAGTGAGAGTGCTCAGATAGTTGTTAAATTCAATTAT 223
************************************************************
consensus_10319#0 CCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCT 299
consensus_10319#1 CCTTTGTTTATGCGATTTATCTGCCTTTGATAGTACAGATTCCAATATACGTTTGTCTCT 283
************************************************************
consensus_10319#0 ACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTT 359
consensus_10319#1 ACGTTTCTCCCACTCTACTTGAGACTTAGTTAGGTTTGTATATGTAGGCTTTGAATTCTT 343
************************************************************
consensus_10319#0 CTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAG 419
consensus_10319#1 CTCTTCTTTGACAGTTTCATCGTTTGGATTTATTTCAGAGGTATTGACAGCCACTTCAAG 403
************************************************************
consensus_10319#0 ATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGA 479
consensus_10319#1 ATCGTTCGGTGCTAACTTTTTGCTACGCTTTTTCTTTTTCTTTTTTATTCCTTGCCCAGA 463
************************************************************
consensus_10319#0 TTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGC 539
consensus_10319#1 TTTCAGTTTTAGAGAACTACATAAAACATCGTCATAATCTGACATCTCTTGGGCAACAGC 523
************************************************************
consensus_10319#0 CAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTT 599
consensus_10319#1 CAAAATCCAATTTTATAGAACAAGAGCACTGAGACACTCGAATCAAATCAAATTGTGTTT 583
************************************************************
consensus_10319#0 TGGTTCTTGTATCAGCCTGCA-AGCAAT-TACATAGAAGTTTGTTTTAATATCTTTAGAA 657
consensus_10319#1 TGGTTCTTGTATCAGCCTGTGTAACAATCTAAATTGTACTAGGTGGAGTTAGTTCCAGAT 643
******************* * **** ** ** * * * ** ** * ***
consensus_10319#0 GTGGAAAGTAAAAGTCTGAATCTTCTTTTAGAACGCACTATGAAAAAACGCTTGAAAAGG 717
consensus_10319#1 GGCC-------------------------------------------------------- 647
*
consensus_10319#0 TTCGATCTTAGTTATGTCAGCCAGTCAGTCGTAACGTTCTAGCCAAATAAACAAAAGTTT 777
consensus_10319#1 ------------------------------------------------------------
consensus_10319#0 CTGTTACTGTATTTGAGTTACAAGTTTGACGGAAATTTAGGAAGGAGCGTTGTAATTACA 837
consensus_10319#1 ------------------------------------------------------------
consensus_10319#0 TTCACAACTAGCATAATGTGTTTATGTCCACTGTGTTTTGATATAAATCGATTCATTTTC 897
consensus_10319#1 ------------------------------------------------------------
consensus_10319#0 GGTCAAATCAGGAAAACATTGTTTTGAGATTAGTTGGCATATAAGCTCAATTACTGCTTT 957
consensus_10319#1 ------------------------------------------------------------
consensus_10319#0 GTGCCACTTTTATAAAAGTTTTTATTGGGGTTTGCGAACAGTTAATCTCATTTTGGATCG 1017
consensus_10319#1 ------------------------------------------------------------
consensus_10319#0 TATTCAGATTGAC 1030
consensus_10319#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||