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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 572 fasta sequence
[GAAATTTTTGTTATAAAGTTGATGGTAGTGATAAGCGATGACAAGCACCTGTGATTGTTGAAAAACTTAAATTATTTAGCGTTATGAATGTAATTGAAGTAATGTATTTTAAATATATCAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAAACTGGAAAGAAAAATAACAAAAGGAAAAATAGAAAAAATACTGGGAAGAAAACTGCGAAAGAAACTAACAAAAAAACTGGGAAAGAAACTGGAAAGANAACTAACAGGNTCAAAGCTGNTGATGCTGTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTCGAAAACAAACTNCTGACGTGTAATTCCATTCATTATTTNCACATATGNTTCANTTTACATAAA]
[+] EMBL CD149396 [GAAATTTTTGTTATAAAGTTGATGGTAGTGATAAGCGATGACAAGCACCTGTGATTGTTGAAAAACTTAAATTATTTAGCGTTATGAATGTAATTGAAGTAATGTATTTTAAATATATCAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACg ]
[+] EMBL CD165099 [ atAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAAACTGGAAAGAAAAATAACAAAAGGAAAAATAGAAAAAATACTGGGAAGAAAACTGCGAAAGAAACTAACAAAAAAACTGGGAAAGAAACTGGAAAGANAACTAACAGGNTCAAAGCTGNTGATGCTGTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTCGAAAACAAACTNCTGACGTGTAATTCCATTCATTATTTNCACATATGNTTCANTTTACATAAA]
[+] EMBL CD150535 [ aacACGGA CGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAACCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGG AAAAAACTGGAAAGAAAAATAACAAAAGGAAAAATAGAAAAAta ]
consensusID : consensus_10320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 381 fasta sequence
[ACCCAGTGTTACTACAATCCTTGAAATGATGATGAAGAATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGAAGGATGAAG]
[-] EMBL CD097596 [ACCCAGTGTTACTACAATCCTTGAAATGATGATGAAGAATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGCGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCAC ]
[-] EMBL CD160288 [ ttcATCCTT CAGGATGATGAAGAATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGAAGGATGAAG]
[-] EMBL CD163085 [ AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCAC ]
[-] EMBL CD159905 [ AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCAC ]
[-] EMBL CD159361 [ AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAA ]
[-] EMBL CD159153 [ GCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAA ]
consensusID : consensus_10320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 347 fasta sequence
[AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTGACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAACTGG]
[-] EMBL CD159888 [AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTGACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAACTGG]
[-] EMBL CD113471 [ TTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGCGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAGGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAACCACAGGGAATACGAATACCGCAC ]
[+] EMBL CD150263 [ TTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCCACGGTAGCTGTAAACACGGGCTCAGAAGTG ]
consensusID : consensus_10320#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[TTTCTCTGTATTGTTTTGGAGGNGTCTTGGCACTAGCTCTTGTAGACCAGGCTGGCCTTGAACTCGCGAAAAATAACAAAAGGAAAAATAGAAAAAATACTGGGGAAGAAAACTGGAAAGAAAACTAACAAAAAACTGGGAAGAAACTGGAAAGAAACTAACAAGGTCAAGCTGTTGATCGTCTCGGGATGCATGACAGACTCGAGGATCGTCGTACTTCCTTGAAAACAACTCGGCGGTTGTAATCCCATCATTATTCCACAA]
[+] EMBL AW497756 [TTTCTCTGTATTGTTTTGGAGGNGTCTTGGCACTAGCTCTTGTAGACCAGGCTGGCCTTGAACTCGCGAAAAATAACAAAAGGAAAAATAGAAAAAATACTGGGGAAGAAAACTGGAAAGAAAACTAACAAAAAACTGGGAAGAAACTGGAAAGAAACTAACAAGGTCAAGCTGTTGATCGTCTCGGGATGCATGACAGACTCGAGGATCGTCGTACTTCCTTGAAAACAACTCGGCGGTTGTAATCCCATCATTATTCCACAA]
consensusID : consensus_10320#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 255 fasta sequence
[AGAAAAATAACAAAAGGAAAAATAGAAAAAATNCTGGGAAGAAAACTGGAAAGAAAACTAACAAAAAAAACTGGGAAGAAAACTGGAAAGAAAACTAACAAGGTCAAAGCTGTTGATGCT--GTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTTGAAAACAAACTCTGACGTTGTAATTCCATTCATTATTTCAACATAATGTTTCATTTTACATAAATAAAATTAGATTAGTCAGAAACAGAAAA]
[-] EMBL CD165065 [AGAAAAATAACAAAAGGAAAAATAGAAAAAATNCTGGGAAGAAAACTGGAAAGAAAACTAACAAAAAAAACTGGGAAGAAAACTGGAAAGAAAACTAACAAGGTCAAAGCTGTTGATGCT GTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTTGAAAACAAACTCTGACGTTGTAATTCCATTCATTATTTCAACATAATGTTTCATTTTACATAAAT ]
[+] EMBL AI820481 [ AAC AAAAAAACTGGGAAGAAAACTGGAAAGAAAACTAACAAGGTCAAAGCTGTTGATGCTAGGTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTTGAGAACAAACTCTGACGTTGTAATTCCATTCATTATTTCAACATAATGTTTCATTTTACATAAATAAAATTAGATTAGTCAGAAACAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10320#3 ------------------------------------------------------------
consensus_10320#4 ------------------------------------------------------------
consensus_10320#0 GAAATTTTTGTTATAAAGTTGATGGTAGTGATAAGCGATGACAAGCACCTGTGATTGTTG 60
consensus_10320#1 ------------------------------------------------------------
consensus_10320#2 ------------------------------------------------------------
consensus_10320#3 ------------------------------------------------------------
consensus_10320#4 ------------------------------------------------------------
consensus_10320#0 AAAAACTTAAATTATTTAGCGTTATGAATGTAATTGAAGTAATGTATTTTAAATATATCA 120
consensus_10320#1 ------------------------------------------------------------
consensus_10320#2 ------------------------------------------------------------
consensus_10320#3 ------------------------------------------------------------
consensus_10320#4 ------------------------------------------------------------
consensus_10320#0 GCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTT 180
consensus_10320#1 ------------------------------------------------------------
consensus_10320#2 ------------------------------------------------------------
consensus_10320#3 ------------------------------------------------------------
consensus_10320#4 ------------------------------------------------------------
consensus_10320#0 GAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGT 240
consensus_10320#1 ------------------------------------------------------------
consensus_10320#2 ------------------------------------------------------------
consensus_10320#3 -----------------------------------------TTTCTCTGTATTGTTTTGG 19
consensus_10320#4 ------------------------------------------------------------
consensus_10320#0 GAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACA 300
consensus_10320#1 ---ACCCAGTGTTACTACAATCCTTGAAATGATGATGAAGAATTCTTGGTTGTTGTCGGC 57
consensus_10320#2 ----------------------------------------AATTCTTGGTTGTTGTCGGC 20
consensus_10320#3 AGGNGTCTTGGCACTAGCTCTTGTAGACCAGGCTGGCCTTGAACTCGCGAAAAATAACAA 79
consensus_10320#4 -----------------------------------------------AGAAAAATAACAA 13
consensus_10320#0 GGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAAACTGGAAAGAAAAATAACAA 360
consensus_10320#1 CATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTA-TCTTACACAGTGCCGA 116
consensus_10320#2 CATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTA-TCTGACACAGTGCCGA 79
* * * * *
consensus_10320#3 AAGGAAAAATAGAAAAAATACTGGGGAAGAAAACTGGAAAGAAAACTAACAAAAA--ACT 137
consensus_10320#4 AAGGAAAAATAGAAAAAATNCTGGG-AAGAAAACTGGAAAGAAAACTAACAAAAAAAACT 72
consensus_10320#0 AAGGAAAAATAGAAAAAATACTGGG-AAGAAAACTGCGAAAGAAACTAACAAAAAA-ACT 418
consensus_10320#1 AAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGA-ACAGACTGCC 175
consensus_10320#2 AAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGA-ACAGACTGCC 138
*** **** * * * *** * ** * ** * * * * *
consensus_10320#3 GGGAAGAAA-CTGGAAAGAAA-CTAACAAGGTCAA-GCTGTTGATCGTCTCGGGATGCAT 194
consensus_10320#4 GGGAAGAAAACTGGAAAGAAAACTAACAAGGTCAAAGCTGTTGATGCTGTCGGGATGCAT 132
consensus_10320#0 GGGAAAGAAACTGGAAAGANAACTAACAGGNTCAAAGCTGNTGATGCTGTCGGGATGCAT 478
consensus_10320#1 GTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCT 235
consensus_10320#2 GTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCT 198
* * ** ** ** * *** ** * * * * * * * * *
consensus_10320#3 G-----ACAGACTC-GAGG--ATCGTCG-TACTT-CCTTGAAAACAA-C--TCGGCGGTT 241
consensus_10320#4 G-----ACAGACTCTGAGG--ATCGTCG-TACTTTCCTTGAAAACAAAC--TCTGACGTT 182
consensus_10320#0 G-----ACAGACTCTGAGG--ATCGTCG-TACTTTCCTCGAAAACAAAC--TNCTGACGT 528
consensus_10320#1 GTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTT 295
consensus_10320#2 GTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTT 258
* ** * *** ** * ** ** ** *** * * * *
consensus_10320#3 GTAATCCCAT-CATTATTCCACAA------------------------------------ 264
consensus_10320#4 GTAATTCCATTCATTATTTCAACATAATGTTTCATTTTACATAAATAAAATTAGATTAGT 242
consensus_10320#0 GTAATTCCATTCATTATTTNCACATA-TGNTTCANTTTACATAAA--------------- 572
consensus_10320#1 ACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACT 355
consensus_10320#2 ACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACT 318
* ** * **** *
consensus_10320#3 -----------------------------
consensus_10320#4 CAGAAACAGAAAA---------------- 255
consensus_10320#0 -----------------------------
consensus_10320#1 GCACAACAAAATACTGAAGGATGAAG--- 381
consensus_10320#2 GCACAACAAAATACTGGGGAAAAAACTGG 347
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||