These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 572 fasta sequence [GAAATTTTTGTTATAAAGTTGATGGTAGTGATAAGCGATGACAAGCACCTGTGATTGTTGAAAAACTTAAATTATTTAGCGTTATGAATGTAATTGAAGTAATGTATTTTAAATATATCAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAAACTGGAAAGAAAAATAACAAAAGGAAAAATAGAAAAAATACTGGGAAGAAAACTGCGAAAGAAACTAACAAAAAAACTGGGAAAGAAACTGGAAAGANAACTAACAGGNTCAAAGCTGNTGATGCTGTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTCGAAAACAAACTNCTGACGTGTAATTCCATTCATTATTTNCACATATGNTTCANTTTACATAAA] [+] EMBL CD149396 [GAAATTTTTGTTATAAAGTTGATGGTAGTGATAAGCGATGACAAGCACCTGTGATTGTTGAAAAACTTAAATTATTTAGCGTTATGAATGTAATTGAAGTAATGTATTTTAAATATATCAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACg ] [+] EMBL CD165099 [ atAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAAACTGGAAAGAAAAATAACAAAAGGAAAAATAGAAAAAATACTGGGAAGAAAACTGCGAAAGAAACTAACAAAAAAACTGGGAAAGAAACTGGAAAGANAACTAACAGGNTCAAAGCTGNTGATGCTGTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTCGAAAACAAACTNCTGACGTGTAATTCCATTCATTATTTNCACATATGNTTCANTTTACATAAA] [+] EMBL CD150535 [ aacACGGA CGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAACCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGG AAAAAACTGGAAAGAAAAATAACAAAAGGAAAAATAGAAAAAta ] consensusID : consensus_10320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 381 fasta sequence [ACCCAGTGTTACTACAATCCTTGAAATGATGATGAAGAATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGAAGGATGAAG] [-] EMBL CD097596 [ACCCAGTGTTACTACAATCCTTGAAATGATGATGAAGAATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGCGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCAC ] [-] EMBL CD160288 [ ttcATCCTT CAGGATGATGAAGAATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGAAGGATGAAG] [-] EMBL CD163085 [ AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCAC ] [-] EMBL CD159905 [ AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCAC ] [-] EMBL CD159361 [ AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAA ] [-] EMBL CD159153 [ GCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTTACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAA ] consensusID : consensus_10320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 347 fasta sequence [AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTGACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAACTGG] [-] EMBL CD159888 [AATTCTTGGTTGTTGTCGGCCATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTATCTGACACAGTGCCGAAAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAACTGG] [-] EMBL CD113471 [ TTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGAACAGACTGCCGCGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCTGTAAACACGGGCTCAGAGGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAACCACAGGGAATACGAATACCGCAC ] [+] EMBL CD150263 [ TTACAAAATAGCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCCACGGTAGCTGTAAACACGGGCTCAGAAGTG ] consensusID : consensus_10320#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [TTTCTCTGTATTGTTTTGGAGGNGTCTTGGCACTAGCTCTTGTAGACCAGGCTGGCCTTGAACTCGCGAAAAATAACAAAAGGAAAAATAGAAAAAATACTGGGGAAGAAAACTGGAAAGAAAACTAACAAAAAACTGGGAAGAAACTGGAAAGAAACTAACAAGGTCAAGCTGTTGATCGTCTCGGGATGCATGACAGACTCGAGGATCGTCGTACTTCCTTGAAAACAACTCGGCGGTTGTAATCCCATCATTATTCCACAA] [+] EMBL AW497756 [TTTCTCTGTATTGTTTTGGAGGNGTCTTGGCACTAGCTCTTGTAGACCAGGCTGGCCTTGAACTCGCGAAAAATAACAAAAGGAAAAATAGAAAAAATACTGGGGAAGAAAACTGGAAAGAAAACTAACAAAAAACTGGGAAGAAACTGGAAAGAAACTAACAAGGTCAAGCTGTTGATCGTCTCGGGATGCATGACAGACTCGAGGATCGTCGTACTTCCTTGAAAACAACTCGGCGGTTGTAATCCCATCATTATTCCACAA] consensusID : consensus_10320#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 255 fasta sequence [AGAAAAATAACAAAAGGAAAAATAGAAAAAATNCTGGGAAGAAAACTGGAAAGAAAACTAACAAAAAAAACTGGGAAGAAAACTGGAAAGAAAACTAACAAGGTCAAAGCTGTTGATGCT--GTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTTGAAAACAAACTCTGACGTTGTAATTCCATTCATTATTTCAACATAATGTTTCATTTTACATAAATAAAATTAGATTAGTCAGAAACAGAAAA] [-] EMBL CD165065 [AGAAAAATAACAAAAGGAAAAATAGAAAAAATNCTGGGAAGAAAACTGGAAAGAAAACTAACAAAAAAAACTGGGAAGAAAACTGGAAAGAAAACTAACAAGGTCAAAGCTGTTGATGCT GTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTTGAAAACAAACTCTGACGTTGTAATTCCATTCATTATTTCAACATAATGTTTCATTTTACATAAAT ] [+] EMBL AI820481 [ AAC AAAAAAACTGGGAAGAAAACTGGAAAGAAAACTAACAAGGTCAAAGCTGTTGATGCTAGGTCGGGATGCATGACAGACTCTGAGGATCGTCGTACTTTCCTTGAGAACAAACTCTGACGTTGTAATTCCATTCATTATTTCAACATAATGTTTCATTTTACATAAATAAAATTAGATTAGTCAGAAACAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10320#3 ------------------------------------------------------------ consensus_10320#4 ------------------------------------------------------------ consensus_10320#0 GAAATTTTTGTTATAAAGTTGATGGTAGTGATAAGCGATGACAAGCACCTGTGATTGTTG 60 consensus_10320#1 ------------------------------------------------------------ consensus_10320#2 ------------------------------------------------------------ consensus_10320#3 ------------------------------------------------------------ consensus_10320#4 ------------------------------------------------------------ consensus_10320#0 AAAAACTTAAATTATTTAGCGTTATGAATGTAATTGAAGTAATGTATTTTAAATATATCA 120 consensus_10320#1 ------------------------------------------------------------ consensus_10320#2 ------------------------------------------------------------ consensus_10320#3 ------------------------------------------------------------ consensus_10320#4 ------------------------------------------------------------ consensus_10320#0 GCTGAACAGACTGCCGTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTT 180 consensus_10320#1 ------------------------------------------------------------ consensus_10320#2 ------------------------------------------------------------ consensus_10320#3 ------------------------------------------------------------ consensus_10320#4 ------------------------------------------------------------ consensus_10320#0 GAGCCAACGGTAGCTGTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGT 240 consensus_10320#1 ------------------------------------------------------------ consensus_10320#2 ------------------------------------------------------------ consensus_10320#3 -----------------------------------------TTTCTCTGTATTGTTTTGG 19 consensus_10320#4 ------------------------------------------------------------ consensus_10320#0 GAACAATTGAAAGTTACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACA 300 consensus_10320#1 ---ACCCAGTGTTACTACAATCCTTGAAATGATGATGAAGAATTCTTGGTTGTTGTCGGC 57 consensus_10320#2 ----------------------------------------AATTCTTGGTTGTTGTCGGC 20 consensus_10320#3 AGGNGTCTTGGCACTAGCTCTTGTAGACCAGGCTGGCCTTGAACTCGCGAAAAATAACAA 79 consensus_10320#4 -----------------------------------------------AGAAAAATAACAA 13 consensus_10320#0 GGGAATACGAATACTGCACAACAAAATACTGGGGAAAAAAACTGGAAAGAAAAATAACAA 360 consensus_10320#1 CATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTA-TCTTACACAGTGCCGA 116 consensus_10320#2 CATAATAGCTGTATCCGCAGTCTTCGTTCAATCTGACGATCTA-TCTGACACAGTGCCGA 79 * * * * * consensus_10320#3 AAGGAAAAATAGAAAAAATACTGGGGAAGAAAACTGGAAAGAAAACTAACAAAAA--ACT 137 consensus_10320#4 AAGGAAAAATAGAAAAAATNCTGGG-AAGAAAACTGGAAAGAAAACTAACAAAAAAAACT 72 consensus_10320#0 AAGGAAAAATAGAAAAAATACTGGG-AAGAAAACTGCGAAAGAAACTAACAAAAAA-ACT 418 consensus_10320#1 AAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGA-ACAGACTGCC 175 consensus_10320#2 AAGATTTGGCAGAATACGTGTACTTTGACAAATGTTACAAAATAGCTGA-ACAGACTGCC 138 *** **** * * * *** * ** * ** * * * * * consensus_10320#3 GGGAAGAAA-CTGGAAAGAAA-CTAACAAGGTCAA-GCTGTTGATCGTCTCGGGATGCAT 194 consensus_10320#4 GGGAAGAAAACTGGAAAGAAAACTAACAAGGTCAAAGCTGTTGATGCTGTCGGGATGCAT 132 consensus_10320#0 GGGAAAGAAACTGGAAAGANAACTAACAGGNTCAAAGCTGNTGATGCTGTCGGGATGCAT 478 consensus_10320#1 GTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCT 235 consensus_10320#2 GTGGTGAAAAATGATAACCAACCTATCAAGAACGAACCGATCGTTGAGCCAACGGTAGCT 198 * * ** ** ** * *** ** * * * * * * * * * consensus_10320#3 G-----ACAGACTC-GAGG--ATCGTCG-TACTT-CCTTGAAAACAA-C--TCGGCGGTT 241 consensus_10320#4 G-----ACAGACTCTGAGG--ATCGTCG-TACTTTCCTTGAAAACAAAC--TCTGACGTT 182 consensus_10320#0 G-----ACAGACTCTGAGG--ATCGTCG-TACTTTCCTCGAAAACAAAC--TNCTGACGT 528 consensus_10320#1 GTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTT 295 consensus_10320#2 GTAAACACGGGCTCAGAAGTGATTAGCGACACACAATCAAAAAGTGAACAATTGAAAGTT 258 * ** * *** ** * ** ** ** *** * * * * consensus_10320#3 GTAATCCCAT-CATTATTCCACAA------------------------------------ 264 consensus_10320#4 GTAATTCCATTCATTATTTCAACATAATGTTTCATTTTACATAAATAAAATTAGATTAGT 242 consensus_10320#0 GTAATTCCATTCATTATTTNCACATA-TGNTTCANTTTACATAAA--------------- 572 consensus_10320#1 ACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACT 355 consensus_10320#2 ACAGAGTCAAACCCTATTATCACAAATCAAGAGAGAATAATCACAGGGAATACGAATACT 318 * ** * **** * consensus_10320#3 ----------------------------- consensus_10320#4 CAGAAACAGAAAA---------------- 255 consensus_10320#0 ----------------------------- consensus_10320#1 GCACAACAAAATACTGAAGGATGAAG--- 381 consensus_10320#2 GCACAACAAAATACTGGGGAAAAAACTGG 347 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||