These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 538 fasta sequence [TTGAGTGTAGATGAAAAATCTCGTCCGCTTCCACGTATTCGTGTATGTGATCTACGTGAACGTGGTAACGACTCTAATCTGGATGATTCTTCTGCTCAAGAGAAAATCGATGAAAGTAAAGATATAATGATGGAATCCTCTAGTGGTGGTGATCAATTATCTGTACGACGTATGAATACTTTTAGTATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAAAATGTCCATTATCTAGAGCACCACCAATGTCAAATATACCAAACTCATTAACTACTCCAACAACTAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTTCCATATTCAGAAGAGAATCCCTTCCTCGGGTGGTTACGAAGAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCA] [+] EMBL CD111358 [TTGAGTGTAGATGAAAAATCTCGTCCGCTTCCACGTATTCGTGTATGTGATCTACGTGAACGTGGTAACGACTCTAATCTGGATGATTCTTCTGCTCAAGAGAAAATCGATGAAAGTAAAGATATAATGATGGAATCCTCTAGTGGTGGTGATCAATTATCTGTACGACGTATGAATACTCTTAGTATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAAAATGTCCATTATCTAGAGCACCACCAATGTCAAATATACCAAACTCATTAACTACTCCAACAACTAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATCAGCGTCATCTTC ] [+] EMBL CD117759 [ TCTGTACGACGTATGAATACTTTTAGTATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAAAATGTCCATTATCTAGAGCACCACCAATGTCAAATATACCAAACTCATTAACTACTCCAACAACTAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTTCCATATTCAGAAGAGAATCCCTTCCTCGGGTGGTTACGAAGAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCA] [+] EMBL CD117454 [ TCTGTACGACGTATGAATACTTTTAGTATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAAAATGTCCATTATCTAGAGCACCACCAATGTCAAATATACCAAACTCATTAACTACTCCAACAACTAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTTCCATATTCAGAAGAGAATCCCTTCCTCGGGTGGTTACGAAGAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCA] consensusID : consensus_10321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 537 fasta sequence [TCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT--TCTTCAACATTAGAT--CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] [-] EMBL CD200086 [TCATCAGCGTCATCTTCATCATCATCNCCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATCCAAAAACATTTTTCGACCACCAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] [-] EMBL CD200056 [TCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] [-] EMBL CD200029 [TCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAAT CCAAAACATTTTTCGAACGACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTGGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] [-] EMBL CD200033 [TCATCAGCGTCATCTTCATCATCATCACNTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATCCAAAAAC TTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATA TCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAGCAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATTCAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] [-] EMBL CD200084 [TCATCAGCGTCATCTTCATCATCATCNCCTAGT AGCAGAATAGTAATGAT AAAAAGAGAAT CAAAAACA TTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTTTCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTATACAA] [+] EMBL CD118728 [ CATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAGATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT C ] [+] EMBL CD118742 [ CATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAGATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT C ] [+] EMBL CD118795 [ CATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAGATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT C ] [-] EMBL CD200036 [ TTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCCGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] [-] EMBL CD200073 [ TACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] [-] EMBL CD200038 [ TTCTATCATTGATATAATACATACCAATGATCGTCAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] [-] EMBL CD200085 [ ATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCATACTCTTC ACA TAGATNCCCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10321#0 TTGAGTGTAGATGAAAAATCTCGTCCGCTTCCACGTATTCGTGTATGTGATCTACGTGAA 60 consensus_10321#1 --------------TCATCAGCGTCATCTTCATCATCATCACCTA-GTAAGCAGAATAGT 45 * **** **** * * ** ** ** * * * consensus_10321#0 CGTGGTAACGACTCTAATCTGGATGATTCTTCTGCTCAAGAGAAAATCGATGAAAGTAAA 120 consensus_10321#1 AATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAA 105 ** *** * *** * * ** * *** * * *** * ** * ** consensus_10321#0 GATATAATGATGGAATCCTCTAGTGGTGGTGATCAATTATCTGTACGA-CGTATGAATAC 179 consensus_10321#1 GCTGTCCCATATTCAGAAGAGAATC-CAACACTTCCTTATCAAAAGAAGCATAAAGATAC 164 * * * * * * * ***** * * * ** **** consensus_10321#0 TTTTAGT-ATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAA 238 consensus_10321#1 TTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAA 224 ** * * ** ** * * * * * * * ** * * * * *** consensus_10321#0 AATGTCCATTATCTAGAGCA---CCACCAATGTCAAAT-ATACCAAACTCATTAACTACT 294 consensus_10321#1 AGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAA 284 * * ** * * * * * * ** ** * ** * * ** * ** ** * consensus_10321#0 CCAACAAC-TAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATC 353 consensus_10321#1 GCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCA-TTATTTAATAGTAATA 343 ** **** ** * * * * *** ** * *** * *** * ** consensus_10321#0 AGCGTCATC--TTCA-----TCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAG 406 consensus_10321#1 AAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAA 403 * ** * ** * * *** *** *** * * ** * ** * **** * consensus_10321#0 AGAATACAAAAACAT---TTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTTCCAT 463 consensus_10321#1 ATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCA--TTCTTCAAC 461 * **** ** *** * * *** * *** * * * *** * *** * consensus_10321#0 ATTCAGAAGAGAATCCCTTCCTCGGGTGGTTACGAAGAACACTTC-CTTATCAAAAGA-A 521 consensus_10321#1 ATT--AGATCCAACATCATCGTCGGGT----ACAATGAATTCTGCGCAAATTAAACAACA 515 *** * ** * ** ****** ** * *** ** * * ** *** * * consensus_10321#0 GCATAAAGATACTTCCA----- 538 consensus_10321#1 ACACAATAATAATACTAAACAA 537 ** ** *** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||