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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 538 fasta sequence
[TTGAGTGTAGATGAAAAATCTCGTCCGCTTCCACGTATTCGTGTATGTGATCTACGTGAACGTGGTAACGACTCTAATCTGGATGATTCTTCTGCTCAAGAGAAAATCGATGAAAGTAAAGATATAATGATGGAATCCTCTAGTGGTGGTGATCAATTATCTGTACGACGTATGAATACTTTTAGTATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAAAATGTCCATTATCTAGAGCACCACCAATGTCAAATATACCAAACTCATTAACTACTCCAACAACTAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTTCCATATTCAGAAGAGAATCCCTTCCTCGGGTGGTTACGAAGAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCA]
[+] EMBL CD111358 [TTGAGTGTAGATGAAAAATCTCGTCCGCTTCCACGTATTCGTGTATGTGATCTACGTGAACGTGGTAACGACTCTAATCTGGATGATTCTTCTGCTCAAGAGAAAATCGATGAAAGTAAAGATATAATGATGGAATCCTCTAGTGGTGGTGATCAATTATCTGTACGACGTATGAATACTCTTAGTATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAAAATGTCCATTATCTAGAGCACCACCAATGTCAAATATACCAAACTCATTAACTACTCCAACAACTAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATCAGCGTCATCTTC ]
[+] EMBL CD117759 [ TCTGTACGACGTATGAATACTTTTAGTATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAAAATGTCCATTATCTAGAGCACCACCAATGTCAAATATACCAAACTCATTAACTACTCCAACAACTAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTTCCATATTCAGAAGAGAATCCCTTCCTCGGGTGGTTACGAAGAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCA]
[+] EMBL CD117454 [ TCTGTACGACGTATGAATACTTTTAGTATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAAAATGTCCATTATCTAGAGCACCACCAATGTCAAATATACCAAACTCATTAACTACTCCAACAACTAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTTCCATATTCAGAAGAGAATCCCTTCCTCGGGTGGTTACGAAGAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCA]
consensusID : consensus_10321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 537 fasta sequence
[TCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT--TCTTCAACATTAGAT--CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
[-] EMBL CD200086 [TCATCAGCGTCATCTTCATCATCATCNCCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATCCAAAAACATTTTTCGACCACCAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
[-] EMBL CD200056 [TCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
[-] EMBL CD200029 [TCATCAGCGTCATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAAT CCAAAACATTTTTCGAACGACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTGGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
[-] EMBL CD200033 [TCATCAGCGTCATCTTCATCATCATCACNTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATCCAAAAAC TTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATA TCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAGCAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATTCAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
[-] EMBL CD200084 [TCATCAGCGTCATCTTCATCATCATCNCCTAGT AGCAGAATAGTAATGAT AAAAAGAGAAT CAAAAACA TTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTTTCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTATACAA]
[+] EMBL CD118728 [ CATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAGATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT C ]
[+] EMBL CD118742 [ CATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAGATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT C ]
[+] EMBL CD118795 [ CATCTTCATCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTCCCATATTCAGAAGAGAATCCAACACTTCCTTATCAAAAGAAGCATAAAGATACTTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAGATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT C ]
[-] EMBL CD200036 [ TTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCCGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
[-] EMBL CD200073 [ TACTAATAATAATAGTAAAGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
[-] EMBL CD200038 [ TTCTATCATTGATATAATACATACCAATGATCGTCAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCAT TCTTCAACATTAGAT CCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
[-] EMBL CD200085 [ ATTGATATATTACATACAAATGATCGACAAAAGCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCATTATTTAATAGTAATAAAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAAATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCATACTCTTC ACA TAGATNCCCAACATCATCGTCGGGTACAATGAATTCTGCGCAAATTAAACAACAACACAATAATAATACTAAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10321#0 TTGAGTGTAGATGAAAAATCTCGTCCGCTTCCACGTATTCGTGTATGTGATCTACGTGAA 60
consensus_10321#1 --------------TCATCAGCGTCATCTTCATCATCATCACCTA-GTAAGCAGAATAGT 45
* **** **** * * ** ** ** * * *
consensus_10321#0 CGTGGTAACGACTCTAATCTGGATGATTCTTCTGCTCAAGAGAAAATCGATGAAAGTAAA 120
consensus_10321#1 AATGATAAAAAAGAGAATACAAAAACATTTTTCGAACAACAAACAATTAAATTAAATCAA 105
** *** * *** * * ** * *** * * *** * ** * **
consensus_10321#0 GATATAATGATGGAATCCTCTAGTGGTGGTGATCAATTATCTGTACGA-CGTATGAATAC 179
consensus_10321#1 GCTGTCCCATATTCAGAAGAGAATC-CAACACTTCCTTATCAAAAGAAGCATAAAGATAC 164
* * * * * * * ***** * * * ** ****
consensus_10321#0 TTTTAGT-ATGTCAGATAAAGTTCGTCCAACTGGTTCAGATTCCCAATCACCTAATCTAA 238
consensus_10321#1 TTCCATTCATTCCAAACCTAAAACAGCAACTTTATCCAATACTACTAATAATAATAGTAA 224
** * * ** ** * * * * * * * ** * * * * ***
consensus_10321#0 AATGTCCATTATCTAGAGCA---CCACCAATGTCAAAT-ATACCAAACTCATTAACTACT 294
consensus_10321#1 AGTTTCTACAAATGATGCTAATTCTATCATTGATATATTACATACAAATGATCGACAAAA 284
* * ** * * * * * * ** ** * ** * * ** * ** ** *
consensus_10321#0 CCAACAAC-TAGTAGTAGTGAAAATTCGCCGATCAAACAATCAGCTGACAAATCTTCATC 353
consensus_10321#1 GCATCAACATAATGATGTTAATCGTTCAAGTATTCCTTATTCA-TTATTTAATAGTAATA 343
** **** ** * * * * *** ** * *** * *** * **
consensus_10321#0 AGCGTCATC--TTCA-----TCATCATCACCTAGTAAGCAGAATAGTAATGATAAAAAAG 406
consensus_10321#1 AAAGTAAAAAGTTAAAGAAGTTATCGTCATCTAATCAATCTGATGATCATCAGAAAATAA 403
* ** * ** * * *** *** *** * * ** * ** * **** *
consensus_10321#0 AGAATACAAAAACAT---TTTTCGAACAACAAACAATTAAATTAAATCAAGCTGTTCCAT 463
consensus_10321#1 ATAATATGAATACAAAAATATCTGAATCATTCACATTCACTGATAGTCA--TTCTTCAAC 461
* **** ** *** * * *** * *** * * * *** * *** *
consensus_10321#0 ATTCAGAAGAGAATCCCTTCCTCGGGTGGTTACGAAGAACACTTC-CTTATCAAAAGA-A 521
consensus_10321#1 ATT--AGATCCAACATCATCGTCGGGT----ACAATGAATTCTGCGCAAATTAAACAACA 515
*** * ** * ** ****** ** * *** ** * * ** *** * *
consensus_10321#0 GCATAAAGATACTTCCA----- 538
consensus_10321#1 ACACAATAATAATACTAAACAA 537
** ** *** * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||