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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1120 fasta sequence
[CGGAGCCATTAATTCGGCACGACGCTTGAGAGCGTCCACCTACTGACTAGAACCGTACGAGGGTTATCGACCAGAGTGAGAACTTGGATGCTGATTTACACTTGATGCTGTAATGCCAAAACTCTATTTAGCCAAATAATTATTCACTCGTTCAAATGAGTGAATTTCGGACCGAAATGCGAGACCTCATTGGTTCGTCCATAAATTATAGTCTTGTTTGAAAATTTTCTAATTGATGACTTCTCAATTCGGCTCTCCTGGGTGGAAGCTGTCAAACCATCATGACACTCTCAAGGTCACTTTGACGTCGCTCAAATGTCCCTCTGAATGTAACTGTGTGCAGTCCATCATCTAATTAAATACACTTAATTTGAGTTTGTTATTTACAACTTCAATGTAGCATGAACACACACCTGGTTGAATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAGATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATTTTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAGTTCTGGATTGCACTTGATGGTGTAAAAGTTCTTGTAAATGAAGAAACACACGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCCTGTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTTTATGAAATCCCCAATTCATATGACCTTTTGTGGTGTAATGGGATGTTCTAGAAGTATCAACGAAACCCTAACATTTTTCGAGGATTTGAAAAGCATATTTGAGATCTAAAAATATCCATGAGTCCGATTAGGTGCAAAGTGACCAACTTTCAATAAATTATTGGACCTTTAGAAAAGAA]
[+] EMBL CD081574 [CGGAGCCATTAATTCGGCACGACGCTTGAGAGCGTCCACCTACTGACTAGAACCGTACGAGGGTTATCGACCAGAGTGAGAACTTGGATGCTGATTTACACTTGATGCTGTAATGCCAAAACTCTATTTAGCCAAATAATTATTCACTCGTTCAAATGAGTGAATTTCGGACCGAAATGCGAGACCTCATTGGTTCGTCCATAAATTATAGTCTTGTTTGAAAATTTTCTAATTGATGACTTCTCAATTCGGCTCTCCTGGGTGGAAGCTGTCAAACCATCATGACACTCTCAAGGTCACTTTGACGTCGCTCAAATGTCCCTCTGAATGTAACTGTGTGCAGTCCATCATCTAATTAAATACACTTAATTTGAGTTTGTTATTTACAACTTCAATGTAGCATGAACACACACCTGGTTGAATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAGATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATTTTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAGTTCTGGATTGCACTTGATGGTGTAAAAGTTCTTGTAAATGAAGAAACACACGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCCTGTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTTTATGAAATCCCCAATTCATATGACCTTTTGTGGTGTAATGGGATGTTCTAGAAGTATCAACGAAACCCTAACATTTTTCGAGGATTTGAAAAGCATATTTGAGATCTAAAAATATCCATGAGTCCGATTAGGTGCAAAGTGACCAACTTTCAATAAATTATTGGACCTTTAGAAAAGAA]
consensusID : consensus_10324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 927 fasta sequence
[TTTATGTATTTATGGGTCGCATTGCTTATTTTCTATTCCCTGTATTTTTGTCTCTATTATTTATCATTCATTTGCCATCTTTTTTAGTGAATGTAACTGTGTGCAGTCCATCATCTAATTAAATACACTTAATTTGAGTTTGTTATTTACAACTTCAATGTAGCATGAACACACACCTGGTTGAATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAGATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATTTTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTTTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGATCATTTTTTACTTTAGTAGCTTTTGAAGAGTCGCGTATAGTACTGATTTCTTTACTCAATTTTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAAATCCCCAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTTGTAAGAAGTATTCAACAGAAACACTAAACAATTTTTCGATGGATTTGCAAAAAGCAATATTTGTAGAATTTAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTCGACATAAATATATTGTGATCTTTTATGTAAATAGATGGAC]
[+] EMBL CD078789 [TTTATGTATTTATGGGTCGCATTGCTTATTTTCTATTCCCTGTATTTTTGTCTCTATTATTTATCATTCATTTGCCATCTTTTTTAGTGAATGTAACTGTGTGCAGTCCATCATCTAATTAAATACACTTAATTTGAGTTTGTTATTTACAACTTCAATGTAGCATGAACACACACCTGGTTGAATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAGATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATTTTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTCTGGATTGCACTTGATGGTGTAGAAGTTCTTGNTAATGAAG AAACACACG ]
[-] EMBL CD075400 [ AGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTTTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACCCGATCATTTTTTACTTTAGTAGCTTTTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAAATCCCAAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTCGTAAGAAGTATTCAACAGAAACACTAAACAATTTTTCGATGGATTTGCAAAAAGCAATATTTGTAGAATTTAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTCGACATAAATATATTGTGATCTTTTATGTAAATAGATGGAC]
[-] EMBL CD075884 [ CCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATTTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTTTGGATTGCACTTGATGGTGTAGAAGTTTTTGTAAATGAAGAAAACACACGATCATTTTTTACTTTAGTAGCTTTTGAAGAGTCGCGTATAGTACTGATTTCTTTACTCAATTTTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAAATCCCCAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTTGTAAGAAGTATTCAACAGAAACCCTAAACAATTTTTCGATGGATTTGCAAAAAGCAATATTTGTAGAATTTAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTCGACATAAATATATTGTGATCTTTTATGTAAATAGATGGAC]
[-] EMBL CD073250 [ tTCCTCACATAAGTTTGTTGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATTTCGTTGGTAATTTTCGTTTTGCTGTAAAATTTTTTGGAAAGTTTTGGATTGCACTTGATGGTGTAGAAGTTTTTGTAAATGAAGAAAACACACGATCATTTTTTACTTTAGTAGGTTTTGAAGAGTTGGGTATAGTACTGATTTTTTTACTCAATTTTGTTGATCCATGTGTCACTGGGTTTAGAGGACCAAAGTATTATGAAAATCCCCAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTTGTAAGAAGTATTCAACAGAAACACTAAACAATTTTTTGATGGATTTGCAAAAAGCAATATTTGTAGAATTTAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTTGACATAAATATATTGTGATTTTTTATGTAAATAGATGGAC]
consensusID : consensus_10324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 852 fasta sequence
[CGAGGACTTGAGTAGTAAAGTG-AATGTAACTGTGTGCTTTCCATCATCTAATTAACTACACTTAATTTGAGTTTGTTATTTACAA-CTTCAATGTAGCATGAACACACACCTGGTTGAATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAGATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATTTTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTCTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATATGAAAATCCCAAATTCATATGAGCTTTNTGTGGTGTAATGGGAAAATGTCGTAGAAGTATTCAACAGAAACACTAAACAATTTTTCGATGGATTTTGCAAAAAGCATATTTGTAGAATCTAAAAATATTNCATGAAAGTACAGATATAGTGTGCAAAAGTGAAAGCAACATTNCGACATAATTTATTGGGATCTTTATGTAAATAGATGTA]
[+] EMBL CD082279 [CGAGGACTTGAGTAGTAAAGTG AATGTAACTGTGTGCTTTCCATCATCTAATTAACTACACTTAATTTGAGTTTGTTATTTACAA CTTCAATGTAGCATGAACACACACCTGGTTGAATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAGATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATTTTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTCTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATATGAAAATCCCAAATTCATATGAGCTTTNTGTGGTGTAATGGGAAAATGTCGTAGAAGTATTCAACAGAAACACTAAACAATTTTTCGATGGATTTTGCAAAAAGCATATTTGTAGAATCTAAAAATATTNCATGAAAGTACAGATATAGTGTGCAAAAGTGAAAGCAACATTNCGACATAATTTATTGGGATCTTTATGTAAATAGATGTA]
[+] EMBL CD064626 [ taTTGAGT GT CTGTGAAATGTAACTGTGTGCAGTCCATCATCTAATTAAATACACTTAATTTGAGTTTGTTATTTACAAGCTTCAATGTAGCATGAACACACACCTGGTTGAATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAGATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATTTTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTG ]
[-] EMBL CD156046 [ CACCTGGTTGAATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAGATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATTTTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTCTGGATTGCA ]
[+] EMBL CD063393 [ TTCTTAGTAAAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTTATCATTTGCATTCTAAAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAG ]
consensusID : consensus_10324#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 787 fasta sequence
[TCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTAATCATAACAACATCTTGCATTGTACCAAGGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTAAGAATAATTGATACATGCTTAAGCAATTGTAGGTTCTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGGTACCCACCTCCTACCGTTTATAATGTGTAGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAGTGAGACAGTCAATTTCCCTATTATTCCTCAGAATCCCAAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTCGTAAGAAGTATTCAACAGAAACACTAAACAATTTTTCGGTAAGACAACATTTTTCTGTGATTTATTTATGCAGATGGATTTGCAAAAAGCAATATTTGTAGAATCTAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTCGACAT-NATATATTGTGATCTTTTATGTAAATAGATGTAC]
[-] EMBL CD063481 [TCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATGTAATCATAACAACATCTTGCATTGTACCAAGGTTATCATTTGCATTCTAGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCAC ]
[+] EMBL CD082008 [ AGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTAAGAATAATTGATACATGCTTAAGCAATTGTAGGTTCTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGGTACCCACCTCCTACCGTTTATAATGTGTAGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAGTGAGACAGTCAATTTCCCTATTATTCCTCAGAATCCCAAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTCGTAAGAAGTATTCAACAGAAACACTAAACAATTTTTCGGTAAGACAACATTTTTCTGTGATTTATTTATGCAGATGGATTTGCAAAAAGCAATATTTGTAGAATCTAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTCGACAT NATATATTGTGATCTTTTATGTAAATAGATGTA ]
[-] EMBL CD075623 [ TTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTAAGAATAATTGATACATGCTTAAGCAATTGTAGGTTCTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGGTACCCACCTCCTACCGTTTATAATGTGTAGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAGTGAGACAGTCAATTTCCCTATTATTCCTCAGAATCCCAAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTCGTAAGAAGTATTCAACAGAAACACTAAACAATTTTTCGGTAAGACAACATTTTTCTGTGATTTATTTATGCAGATGGATTTGCAAAAAGCAATATTTGTAGAATCTAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTCGACATAAATATATTGTGATCTTTTATGTAAATAGATGTAC]
consensusID : consensus_10324#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 519 fasta sequence
[GAGGCGCTAGAGTGACCTTGAGAGCGTCCACCTACTGACTAGAACCGTACGAGGGTTATCGACCAGAGTGAGAACTTGGATGCTGATTTACACTTGATGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTCTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAAATCCCAAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTCGTAAGAAGTATCAACAGAAACACTAAACAATTTTTCGATGGAT]
[+] EMBL CD077514 [GAGGCGCTAGAGTGACCTTGAGAGCGTCCACCTACTGACTAGAACCGTACGAGGGTTATCGACCAGAGTGAGAACTTGGATGCTGATTTACACTTGATGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGT ]
[+] EMBL CD084167 [ CGCTAGAGTGACCTTGAGAGCGTCCACCTACTGACTAGAACCGTACGAGGGTTATCGACCAGAGTGAGAACTTGGATGCTGATTTACACTTGATGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGGCCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCTTTTGGAAAGTTCTGGATTGCACTTGATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCTCTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAAATCCCAAATTTCATATGAGCTTTTTGTGGTGTAATGGGAATGTTCGTAAGAAGTATCAACAGAAACACTAAACAATTTTTCGATGGAT]
consensusID : consensus_10324#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 138 fasta sequence
[TCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCAC]
[-] EMBL CD063531 [TCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCATAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAATCCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10324#0 CGGAGCCATTAATTCGGCACGACGCTTGAGAGCGTCCACCTACTGACTAGAACCGTACGA 60
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 ------------------------------------------------------------
consensus_10324#1 ------------------------------------------------------------
consensus_10324#3 ------------------------------------------------------------
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 GGGTTATCGACCAGAGTGAGAACTTGGATGCTGATTTACACTTGATGCTGTAATGCCAAA 120
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 ------------------------------------------------------------
consensus_10324#1 ------------------------------------------------------------
consensus_10324#3 ------------------------------------------------------------
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 ACTCTATTTAGCCAAATAATTATTCACTCGTTCAAATGAGTGAATTTCGGACCGAAATGC 180
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 ------------------------------------------------------------
consensus_10324#1 ------------------------------------------------------------
consensus_10324#3 ------------------------------------------------------------
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 GAGACCTCATTGGTTCGTCCATAAATTATAGTCTTGTTTGAAAATTTTCTAATTGATGAC 240
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 ------------------------------------------------------------
consensus_10324#1 ----------------------------------------------------TTTATGTA 8
consensus_10324#3 ------------------------------------------------------------
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 TTCTCAATTCGGCTCTCCTGGGTGGAAGCTGTCAAACCATCATGACACTCTCAAGGTCAC 300
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 ------------------------------------------------------------
consensus_10324#1 TTTATGGGTCGCATTGCTTATTTTCTATTCCCTGTATTTTTGT----CTCTATTATTTAT 64
consensus_10324#3 ------------------------------------------------------------
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 TTTGACGTCGCTCAAATGTCCCTCTGAATGTAACTGTGTGCAGTCCATCATCTAATTAAA 360
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 --CGAGG--ACTTGAGTAGTAAAGTGAATGTAACTGTGTGCTTTCCATCATCTAATTAAC 56
consensus_10324#1 CATTCATTTGC-CATCTTTTTTAGTGAATGTAACTGTGTGCAGTCCATCATCTAATTAAA 123
consensus_10324#3 ------------------------------------------------------------
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 TACACTTAATTTGAGTTTGTTATTTACAACTTCAATGTAGCATGAACACACACCTGGTTG 420
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 TACACTTAATTTGAGTTTGTTATTTACAACTTCAATGTAGCATGAACACACACCTGGTTG 116
consensus_10324#1 TACACTTAATTTGAGTTTGTTATTTACAACTTCAATGTAGCATGAACACACACCTGGTTG 183
consensus_10324#3 ------------------------------------------------------------
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 AATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAG 480
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 AATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAG 176
consensus_10324#1 AATACTCATCTAGCGATGAAGAAAAGACTGAAAAACTGGAGCTGCCTACAACACTCCAAG 243
consensus_10324#3 ------------------------------------------------------------
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 ATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATT 540
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 ATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATT 236
consensus_10324#1 ATTTAAATTCCGATTCCTTTCGTTTTTTTGTTCGTGAAGATGATCCTTCGAAGCATGATT 303
consensus_10324#3 -------------------TCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTA 41
consensus_10324#4 ----------------------------GAGGCGCTAGAGTGACCTTGAGAGC-GTCCAC 31
consensus_10324#0 TTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCAT 600
consensus_10324#5 -TCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCAT 59
consensus_10324#2 TTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCAT 296
consensus_10324#1 TTCGTAGTAGAACTTTTCCTCATGAACCTGGGAGTTGGGCTACTTCCGTTTATATTCCAT 363
consensus_10324#3 CTTCCGTTTATATT---CCATGTAATCATAACAAC------ATCTTGCATTGTACCA-AG 91
consensus_10324#4 CTACTGACTAGAA----CCGTACGAGGGTTATCG-------ACCAGAGTGAGAACTT-GG 79
* * ** * * * *
consensus_10324#0 GTTATCATTTGCATTCTA-GAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAAT 659
consensus_10324#5 --------------------AATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAAT 99
consensus_10324#2 GTTATCATTTGCATTCTA-GAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAAT 355
consensus_10324#1 GTTATCATTTGCATTCTA-GAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAAT 422
consensus_10324#3 GTTATCATTTGCATTCTA-GAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAAT 150
consensus_10324#4 ATGCTGATTTACACTTGATGAATACTTGAGGCGATCAAAGACCCCGTAATTCAATCAAAT 139
****************************************
consensus_10324#0 CCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGG 719
consensus_10324#5 CCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCAC--------------------- 138
consensus_10324#2 CCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGG 415
consensus_10324#1 CCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGG 482
consensus_10324#3 CCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGG 210
consensus_10324#4 CCTGTAATGGCTGATTGTTATACTGTGGATTCTCCTCACATAAGTTTGTCGAAGACATGG 199
***************************************
consensus_10324#0 CCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCT 779
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 CCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCT 475
consensus_10324#1 CCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCT 542
consensus_10324#3 CCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCT 270
consensus_10324#4 CCTATTTATTTCCATTGGATTGAGAATCTCGTTGGTAATCTTCGTTCTGCTGTAAAATCT 259
consensus_10324#0 TTTGGAA-GT-----------------------------------TCTGGATTGCACTTG 803
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 TTTGGAAAGT-----------------------------------TCTGGATTGCACTTG 500
consensus_10324#1 TTTGGAAAGT-----------------------------------TTTGGATTGCACTTG 567
consensus_10324#3 TTTGGAAAGTAAGAATAATTGATACATGCTTAAGCAATTGTAGGTTCTGGATTGCACTTG 330
consensus_10324#4 TTTGGAAAGT-----------------------------------TCTGGATTGCACTTG 284
consensus_10324#0 ATGGTGTAAAAGTTCTTGTAAATGAAGAAA-CACACG----------------------- 839
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 ATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACG----------------------- 537
consensus_10324#1 ATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACG----------------------- 604
consensus_10324#3 ATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACGGTACCCACCTCCTACCGTTTATA 390
consensus_10324#4 ATGGTGTAGAAGTTCTTGTAAATGAAGAAAACACACG----------------------- 321
consensus_10324#0 --------ATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCT 891
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 --------ATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCT 589
consensus_10324#1 --------ATCATTTTTTACTTTAGTAGCTTTTGAAGAGTCGCGTATAGTACTGATTTCT 656
consensus_10324#3 ATGTGTAGATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCT 450
consensus_10324#4 --------ATCATTTTTTACTTTAGTAGCTTCTGAAGAGTCGCGTATAGTACTGATTTCT 373
consensus_10324#0 CTACTCAATTCCTGTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGT-TTATGAA--- 947
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 CTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGT-ATATGAA--- 645
consensus_10324#1 TTACTCAATTTTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAA--- 713
consensus_10324#3 CTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAAGTG 510
consensus_10324#4 CTACTCAATTCTGTTGATCCATGTGTCACTGCGTTTAGAGGACCAAAGTATTATGAA--- 430
consensus_10324#0 -----------------------------A-TCCCCAATT-CATATGA-CCTTTTGTGGT 975
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 -----------------------------AATCCCAAATT-CATATGAGCTTTNTGTGGT 675
consensus_10324#1 -----------------------------AATCCCCAATTTCATATGAGCTTTTTGTGGT 744
consensus_10324#3 AGACAGTCAATTTCCCTATTATTCCTCAGAATCCCAAATTTCATATGAGCTTTTTGTGGT 570
consensus_10324#4 -----------------------------AATCCCAAATTTCATATGAGCTTTTTGTGGT 461
consensus_10324#0 GTAATGGGA---TGTTCTAGAAGTAT-CAAC-GAAACCCTAAC--ATTTTTCGA-GGAT- 1026
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 GTAATGGGAAAATGTCGTAGAAGTATTCAACAGAAACACTAAACAATTTTTCGATGGAT- 734
consensus_10324#1 GTAATGGGAATGTTTGTAAGAAGTATTCAACAGAAACACTAAACAATTTTTCGATGGAT- 803
consensus_10324#3 GTAATGGGAATGTTCGTAAGAAGTATTCAACAGAAACACTAAACAATTTTTCGGTAAGAC 630
consensus_10324#4 GTAATGGGAATGTTCGTAAGAAGTAT-CAACAGAAACACTAAACAATTTTTCGATGGAT- 519
consensus_10324#0 ----------------------------------TT---GAAAAGCATATTTG--AGATC 1047
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 ----------------------------------TTTGCAAAAAGCATATTTGTAGAATC 760
consensus_10324#1 ----------------------------------TTGCAAAAAGCAATATTTGTAGAATT 829
consensus_10324#3 AACATTTTTCTGTGATTTATTTATGCAGATGGATTTGCAAAAAGCAATATTTGTAGAATC 690
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 TAAAAA--TAT-CCATGA--GTCCGATTAG---GTGCAAA---GTGACCAA-CTTTCA-- 1093
consensus_10324#5 ------------------------------------------------------------
consensus_10324#2 TAAAAA--TATTNCATGAAAGTACAGATATAGTGTGCAAAAGTGAAAGCAA-CATTNCGA 817
consensus_10324#1 TAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTCGA 889
consensus_10324#3 TAAAAAAATATTCCATGAAGTTACAGATATAGTGTGCAAAAGTGGAAGCAAACATTTCGA 750
consensus_10324#4 ------------------------------------------------------------
consensus_10324#0 -ATAAAT-TATTGG-ACCTTT-AGAAAAGAA------- 1120
consensus_10324#5 --------------------------------------
consensus_10324#2 CATAATT-TATTGGGATCTTT-ATGTAAATAGATGTA- 852
consensus_10324#1 CATAAATATATTGTGATCTTTTATGTAAATAGATGGAC 927
consensus_10324#3 CATNATA-TATTGTGATCTTTTATGTAAATAGATGTAC 787
consensus_10324#4 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||