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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1120 fasta sequence
[GAAAGAGATTCACACTGCTGCCTTCATAGATTATTTACAACAGTG-GATTCTT-TGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA-GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCACTAATGATAATATGA-CGGCTATATTCAA-GGAGTTTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTTTATCTGAATATGAATGGTCGTTATTACCACTATTATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGATTTTGAGGTGGATTTACATAAGATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGC-CCATTTCTCTAAAAGCGCCTCGTGCCGAATCTTGGCTNCG]
[+] EMBL CD137064 [GAAAGAGATTCACACTGCTGCCTTCATAGATTATTTACAACAGTG GATTCTTNTGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAACGGGAATAAAAAGAATAAGGAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCA ]
[+] EMBL CD076813 [ cgcTCATAGATTATTTACAACAGGG GATTCTT TGAAAAATTATAATGAATTAATTAAATGGTCGGCCGAATGGGAATAAAAAGAATAA AAAAAACAAACAGTCCATACAAAAATAAGCTGAAGTACACCAATTTTATGTAAAGCAAATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAAAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCACTAATGATAATATGA CGGCTATATTCAA GGAGTTTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAAACTAGATCTGCACGAA ]
[+] EMBL CD136895 [ CAACAGTGNGATTCTTNTGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCA ]
[+] EMBL CD137164 [ CAACAGTG GATTCTT TGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTCAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCA ]
[-] EMBL CD137314 [ AACAGTG GATTCTT TGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCAC ]
[+] EMBL CD076392 [ TAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCACTAATGATAATATGA CGGCTATATTCAA GGAGTTTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTA ]
[+] EMBL CD136420 [ TGAGCGGCTATATTCAA GGAGTTTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATG ]
[+] EMBL CD166782 [ cATTCAA GGAG TTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTT ]
[+] EMBL CD166666 [ acCAACGGAG TTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTT ]
[+] EMBL CD166798 [ GAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTT ]
[-] EMBL CD082800 [ AATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTTTATCTGAATATGAATGGTCGTTATTACCACTATTATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGATTTTGAGGTGGATTTACATAAGATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGC CCATTTCTCTAAAAGCGCCTCGTGCCGAATCTTGGCTNCG]
[-] EMBL CD083242 [ ATCAATCTAAAAACCTGAAAGATATCGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTTTATCTGAATATGAATGGTCGTTATTACCACTATTATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGATTTTGAGGTGGATTTACATAACATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTGTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGCGCCATTTgtg ]
[+] EMBL CD181652 [ TACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTTTATCTGAATATGAATGGTCGTTATTACCACTATTATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGATTTTGAGGTGGATTTACATAAGATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGT ATCTATCATCCCTTTTAAATCATACGTAAATTTNGTCA ]
consensusID : consensus_10326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[GTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACCTATAAAAGATAAACATGATTTTCAAAAAATTGCTAAGTACTATTCTTGACGTAGAGCAAACGAAATCTAAGTACTTTATCATCTCCAAGAAAAATGGTACCTTACAACAGACCATTTGTCTTTTGTTTCGAATGAAAAACTAATCATCTGCTCAAATTTGTTTAACATTGGGTTCATTTCTAACGTATTCATAGGATTCTTATACTTGATGAGATATCCCTTCGTGAAATCATTTGTTTGGTGAAAAATATTTGATAACTGAAAGACATCCGGTTTGTAAGTTATTGGCATGGGAGAATATCCTTTATTGTTAAAAACCAAGTGAATACCACTGACACTCATAACGAAGGAAATATAGAATNTTCATCCAATCACTNTGTTTGATTTTAAAAGTTTGTCTTTCTGAATTTAATTGATAACTGACTGCTATTAATAATGCGCTTTTTCAATTGCTGTATCCATCGAATTAGTGCTTTCAATCTCTATACATACT]
[+] EMBL CD091384 [GTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACCTATAAAAGATAAACATGATTTTCAAAAAATTGCTAAGTACTATTCTTGACGTAGAGCAAACGAAATCTAAGTACTTTATCATCTCCAAGAAAAATGGTACCTTACAACAGACCATTTGTCTTTTGTTTCGAATGAAAAACTAATCATCTGCTCAAATTTGTTTAACATTGGGTTCATTTCTAACGTATTCATAGGATTCTTATACTTGATGAGATATCCCTTCGTGAAATCATTTGTTTGGTGAAAAATATTTGATAACTGAAAGACATCCGGTTTGTAAGTTATTGGCATGGGAGAATATCCTTTATTGTTAAAAACCAAGTGAATACCACTGACACTCATAACGAAGGAAATATAGAATNTTCATCCAATCACTNTGTTTGATTTTAAAAGTTTGTCTTTCTGAATTTAATTGATAACTGACTGCTATTAATAATGCGCTTTTTCAATTGCTGTATCCATCGAATTAGTGCTTTCAATCTCTATACATACT]
consensusID : consensus_10326#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[TACTGCCCAAAAGCGAAAGTGTTGTCGCGTGTATAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGCCCATTTCTCTAAAAGCTTCCAATCTTTGAACATATACTTATGACCATAATTGAGAAAATCACTGTGTGTCAGTGACAAGCT]
[+] EMBL CD068411 [TACTGCCCAAAAGCGAAAGTGTTGTCGCGTGTATAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGCCCATTTCTCTAAAAGCTTCCAATCTTTGAACATATACTTATGACCATAATTGAGAAAATCACTGTGTGTCAGTGACAAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10326#0 GAAAGAGATTCACACTGCTGCCTTCATAGATTATTTACAACAGTGGATTCTTTGAAAAAT 60
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 ------------------------------------------------------------
consensus_10326#0 TATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAAGAAAAACAAACA 120
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 ------------------------------------------------------------
consensus_10326#0 GTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATAT 180
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 ------------------------------------------------------------
consensus_10326#0 TATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAAC 240
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 ------------------------------------------------------------
consensus_10326#0 AAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGT 300
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 ------------------------------------------------------------
consensus_10326#0 AACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATT 360
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 ------------------------------------------------------------
consensus_10326#0 AACTTGTATAACAAACACCACTAATGATAATATGACGGCTATATTCAAGGAGTTTGGGAA 420
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 ------------------------------------------------------------
consensus_10326#0 CTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGG 480
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 ---GTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAG 57
consensus_10326#0 GAAATATAAACGCTAATATATT---ATCTACCATGACGAATCAATAAAGGAATGTATAAA 537
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 GGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATT 117
consensus_10326#0 TCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTC 597
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 TGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATC 177
consensus_10326#0 CCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCC 657
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 CCTTTAAAATCATACCTATAAAAGATAAACATGATTTTCAAAAAATTGCTAAGTACTATT 237
consensus_10326#0 ATTTGAAGCAAGCAAACGATCT-TGTTTATCTGAATATGAATGGTCGTTATTACCACTAT 716
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 CTTGACGTAGAGCAAACGAAATCTAAGTACTTTATCATCTCCAAGAAAAATGGTACCTTA 297
consensus_10326#0 TATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGAT 776
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 CAACAGACCATTTGTCTTTTGTTTCGAATGAAAAACTAATCATCTGCTCAA---ATTTGT 354
consensus_10326#0 TTTGAGGTGGATTTACATAAGATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAA 836
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 TTAACATTGGGTTCATTTCTAACG-TATTCATAGGATTCTTATACTTGATGAGATATCCC 413
consensus_10326#0 CCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTT 896
consensus_10326#2 ------------------------------------------------------------
consensus_10326#1 TTCGTGAAATCATTTGTTTGGTGAAAA-----ATATTTGATAACTGAAAGACATCCGGTT 468
consensus_10326#0 CCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAA----GCCGAAAGTGTTGT 952
consensus_10326#2 ------------------------------TACTGCCCAAAA----GC-GAAAGTGTTGT 25
consensus_10326#1 TGTAAGTTATTGGCATGGGAGAATATCCTTTATTGTTAAAAACCAAGTGAATACCACTGA 528
* ** **** * * * **
consensus_10326#0 CGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCA-TACGTAAAATTTGTCAAACA 1011
consensus_10326#2 CGCGTGTATAAA-CGTAATCTATCATCCCTTTAAAATCA-TACGTAAAATTTGTCAAACA 83
consensus_10326#1 CACTCATAACGAAGGAAATATAGAATNTTCATCCAATCACTNTGTTTGATTTTAAAAGTT 588
* * ** * * *** ** ** * ***** * ** **** **
consensus_10326#0 CATGCCCTCAGATTC--TCGATATGC-ACGATTGAAAGTAAAGCGATGTCTTAATGTGTT 1068
consensus_10326#2 CATGCCCTCAGATTC--TCGATATGC-ACGATTGAAAGTAAAGCGATGTCTTAATGTGTT 140
consensus_10326#1 TGTCTTTCTGAATTTAATTGATAACTGACTGCTATTAATAATGCGCTTTTTCAAT-TGCT 647
* *** * **** ** * * *** *** * * * *** ** *
consensus_10326#0 GCCATTTGTCGCCCATTTCTCTAAAAGCGCCTCGTGCCGAATCTTGGCTNCG-------- 1120
consensus_10326#2 GCCATTTGTCGCCCATTTCTCTAAAAGCTTCCAATCTTTGAACATATACTTATGACCATA 200
consensus_10326#1 GT-ATCCATCG---AATT-----AGTGCTTTCAATCTCTATACATACT------------ 686
* ** *** * ** * ** * * *
consensus_10326#0 ---------------------------------
consensus_10326#2 ATTGAGAAAATCACTGTGTGTCAGTGACAAGCT 233
consensus_10326#1 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||