cluster # 10335

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Schistosoma mansoni
cluster # 10335 cluster # 10335 Sequences # 15 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10335#0 length = 867 sequences # 12

consensus_10335#1 length = 505 sequences # 3

consensusID : consensus_10335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 867
fasta sequence

                              [GCCTTCATAGGTAGATCGGTTGATAAAGCAGCTAGCGAAATATATTCGGGATGGCATACCTCCGAACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATCTTCAACAAAAGATAAAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTTTGAAACATGATTGGCTGCCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAATTAGTCTAATAAAAGTTGTTGAAAAGCATTGTTCTTACTGTCCTATGTTCTAACCTAGCTAAAAACCTTTTTTCTTCGCAGAAAATGTCCATTTTAACGATCCACGCTCGTCAAATTTTCGATAGTCGGGGGAATCCCACAGTTGAGGTGGATTTGAAAACATCTAAAGGTATGTTGTTAGACAATAAGTTTATGAACCTTTGTCTTCCTTATTCCACTTGGTACACAAATTTTTCACATGTACTAATGTGATCTCACCACTGTCGTTGTACACTAGTCATGATAGTAGCTTGGTTTTACGTTTGTCTACCACAAATTTCGCTCGTTAGTTGTGGTTTTGTCAAGGTTAATACTCAGTGGAGAATAGATATCATCTAATATCTTATTGTTA]

[+] EMBL CD136819             [GCCTTCATAGGTAGATCGGTTGATAAAGCAGCTAGCGAAATATATTCGGGATGGCATACCTCCGAACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATCTTCAACAAAAGATAAAGATGTTCGGGTTCAACAATGCTTACTATAATCAAGTCGGACTTTTGAAACATGATTGGCTGCCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD197837             [                    TGGTAAAGCAGCTAGCGAAATATATTCGGGATGGCATACCTCCGAACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATCTTCAACAAAAGATAAAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTTTGAAACATGATTGGCTGCCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD133446             [                                                                                ATAGCATCGTATCGTTCCAGTCTTAATCGGATGAGTGATCTTCAACAAAAGATAAAGGTGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTTTGAAACATGATTGGCTGCCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAAT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD155316             [                                                                                                                                                                                                                            AGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAATTAGTCTAATAAAAGTTGTTGAAAAGCATTGTTCTTACTGTCCTATGTTCTAACCTAGCTAAAAACCTTTTTTCTTCGCAGAAAATGTCCATTTTAACGATCCACGCTCGTCAAATTTTCGATAGTCGGGGGAATCCCACAGTTGAGGTGGATTTGAAAACATCTAAAGGTATGTTGTTAGACAATAAGTTTATGAACCTTTGTCTTCCTTATTCCACTT                                                                                                                                                                           ]
[+] EMBL CD167331             [                                                                                                                                                                                                                                         ggctCACG GAACT TTGGAAGCTAGGGAC TTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAAT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD167463             [                                                                                                                                                                                                                                      cccggctCACG GAACT TAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATG TTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAAT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD167321             [                                                                                                                                                                                                                                                                   GGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTA  GTC AATTAGTCTAATAAAAGTccg                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD167244             [                                                                                                                                                                                                                                                                   GGACCTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTNGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAATTAGTCTA                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD128431             [                                                                                                                                                                                                                                                                   GGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAAT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AI976819             [                                                                                                                                                                                                                                                                                                                      GCCGAAGGAACAGTGGACTATTATTGAAGATGATATACCATACTTGGAACCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCAATCCTTAGATATATAGTGAATAAATGTAAATGTTTACATTGTTGGTTAGGGTCAAATTAGTTTAATAAA                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD199903             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tcttgtgatTTGTTG CATGCATTGTTCTTACTGTCCTATGTTCTAACCTAGCTAAAAACCTTTTTTCTTCGCAGAAAATGTCCATTTTAACGATCCACGCTCGT                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD193562             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTCGATAGTCGGGGGAATCCCACAGTTGAGGTGGATTTGAAAACATCTAAAGGTATGTTGTTAGACAATAAGTTTATGAACCTTCGTCTTCCTTATTCCACTTGGTACACAAATTTTTCACATGTACTAATGTGATCTCACCACTGTCGTTGTACACTAGTCATGATAGTAGCTTGGTTTTACGTTTGTCTACCACAAATTTCGCTCGTTAGTTGTGGTTTTGTCAAGGTTAATACTCAGTGGAGAATAGATATCATCTAATATCTTATTGTTA]




>consensus_10335#0
GCCTTCATAGGTAGATCGGTTGATAAAGCAGCTAGCGAAATATATTCGGGATGGCATACC
TCCGAACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATC
TTCAACAAAAGATAAAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTT
TGAAACATGATTGGCTGCCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCAC
GTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGA
AACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGC
CGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCA
ATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAATTAG
TCTAATAAAAGTTGTTGAAAAGCATTGTTCTTACTGTCCTATGTTCTAACCTAGCTAAAA
ACCTTTTTTCTTCGCAGAAAATGTCCATTTTAACGATCCACGCTCGTCAAATTTTCGATA
GTCGGGGGAATCCCACAGTTGAGGTGGATTTGAAAACATCTAAAGGTATGTTGTTAGACA
ATAAGTTTATGAACCTTTGTCTTCCTTATTCCACTTGGTACACAAATTTTTCACATGTAC
TAATGTGATCTCACCACTGTCGTTGTACACTAGTCATGATAGTAGCTTGGTTTTACGTTT
GTCTACCACAAATTTCGCTCGTTAGTTGTGGTTTTGTCAAGGTTAATACTCAGTGGAGAA
TAGATATCATCTAATATCTTATTGTTA

consensusID : consensus_10335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 505
fasta sequence

                              [CGGGACATGGGTCGGTTGGGAGTTTGGCTAGCGAAATATATTCGGGATGGCATACCTCCGAACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATCTTCAACAAAAGATAAAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTTTGAAACATGATTGGCTG-CCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCTGACAAGATGTGTGAAACATGCCAATCCTGAGATACATAGTGAAAAAATGTAAATGTTTACATTATCTGTTAGTGTCAAATTGGTTTAATAAAAGGTGTTGGAANGCAAAAAA]

[-] EMBL CD162087             [CGGGACATGGGTCGGTTGGGAGTTTGGCTAGCGAAATATATTCGGGATGGCATACCTCCGAACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATCTTCAACAAAAGATAAAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTTTGAAACATGATTGGCTG CCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGA                                                                                                                                                                                                  ]
[-] EMBL CD161583             [                                                                                                                                  AAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTTTGAAACATGATTGGCTG CCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCCTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTA                                                                                                                                            ]
[-] EMBL AI395628             [                                                                                                                                                              tTAATCAGGTCGGACTTTGAAAACATGATT GCTGCCCTCATAGTCTTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCTGACAAGATGTGTGAAACATGCCAATCCTGAGATACATAGTGAAAAAATGTAAATGTTTACATTATCTGTTAGTGTCAAATTGGTTTAATAAAAGGTGTTGGAANGCAAAAAA]




>consensus_10335#1
CGGGACATGGGTCGGTTGGGAGTTTGGCTAGCGAAATATATTCGGGATGGCATACCTCCG
AACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATCTTCA
ACAAAAGATAAAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTTTGAA
ACATGATTGGCTGCCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCACGTGA
ACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGAAACA
TGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGCCGTA
CGTTAACGTTGTTGTGAAGGAAATGAGTGACCTGACAAGATGTGTGAAACATGCCAATCC
TGAGATACATAGTGAAAAAATGTAAATGTTTACATTATCTGTTAGTGTCAAATTGGTTTA
ATAAAAGGTGTTGGAANGCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10335#0      GCCTTCATAGGTAGATCGGTTGATAAAGCAGCTAGCGAAATATATTCGGGATGGCATACC 60
consensus_10335#1      ----CGGGACATGGGTCGGTTGGGAGTTTGGCTAGCGAAATATATTCGGGATGGCATACC 56
                               *  * * *******  *     ******************************

consensus_10335#0      TCCGAACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATC 120
consensus_10335#1      TCCGAACTGGTGCGGAATTTATAGCATCGTATCGTTCCAGTCTTAATCGAATGAGTGATC 116
                       ************************************************************

consensus_10335#0      TTCAACAAAAGATAAAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTT 180
consensus_10335#1      TTCAACAAAAGATAAAGATGTTCGGATTCAACAATGCTTACTATAATCAGGTCGGACTTT 176
                       ************************************************************

consensus_10335#0      TGAAACATGATTGGCTGCCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCAC 240
consensus_10335#1      TGAAACATGATTGGCTGCCTCATAGTCCTGTTTGGCTCGAAGCTCTACGTCGACTTCCAC 236
                       ************************************************************

consensus_10335#0      GTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGA 300
consensus_10335#1      GTGAACTACAGGAAGCTAGGGACTTTCGAATCGCACGAGCGTCGCTTCTCTACGCTTCGA 296
                       ************************************************************

consensus_10335#0      AACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGC 360
consensus_10335#1      AACATGTTTTGCCGAAGGAACAGTGGACTACTATTGAAGATGATATCCCATACTTGGAGC 356
                       ************************************************************

consensus_10335#0      CGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCGGTCAAATTGGGATAATTTTGTCA 420
consensus_10335#1      CGTACGTTAACGTTGTTGTGAAGGAAATGAGTGACCTGACAAGATGTGTGAAACATGCCA 416
                       ************************************ * ***  ** *  **   ** **

consensus_10335#0      ATCCTGAGATATATAGTGAATAAATGTAAATGTTTACATTGTCTGTTAGTGTCAAATTAG 480
consensus_10335#1      ATCCTGAGATACATAGTGAAAAAATGTAAATGTTTACATTATCTGTTAGTGTCAAATTGG 476
                       *********** ******** ******************* ***************** *

consensus_10335#0      TCTAATAAAAGTTGTTGAAAAGCATTGTTCTTACTGTCCTATGTTCTAACCTAGCTAAAA 540
consensus_10335#1      TTTAATAAAAGGTGTTGGAANGCAAAAAA------------------------------- 505
                       * ********* ***** ** ***                                    

consensus_10335#0      ACCTTTTTTCTTCGCAGAAAATGTCCATTTTAACGATCCACGCTCGTCAAATTTTCGATA 600
consensus_10335#1      ------------------------------------------------------------
                                                                                   

consensus_10335#0      GTCGGGGGAATCCCACAGTTGAGGTGGATTTGAAAACATCTAAAGGTATGTTGTTAGACA 660
consensus_10335#1      ------------------------------------------------------------
                                                                                   

consensus_10335#0      ATAAGTTTATGAACCTTTGTCTTCCTTATTCCACTTGGTACACAAATTTTTCACATGTAC 720
consensus_10335#1      ------------------------------------------------------------
                                                                                   

consensus_10335#0      TAATGTGATCTCACCACTGTCGTTGTACACTAGTCATGATAGTAGCTTGGTTTTACGTTT 780
consensus_10335#1      ------------------------------------------------------------
                                                                                   

consensus_10335#0      GTCTACCACAAATTTCGCTCGTTAGTTGTGGTTTTGTCAAGGTTAATACTCAGTGGAGAA 840
consensus_10335#1      ------------------------------------------------------------
                                                                                   

consensus_10335#0      TAGATATCATCTAATATCTTATTGTTA 867
consensus_10335#1      ---------------------------