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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 783 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTACATTTGAATATAATTATTTGAAAATCTGGTTTTCAGCCCACATTTGACTTCACATAAAATCACAGGTCCTCGTCACCTTCATCCGGAAGAGGAGCCTCGGCAGCCATCTGAATTTCTTGCTCATATTGCCGAACCAAGTAGGGGTCGATTTGGATTTCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG-TTTTTTTT-CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT-ATCTTGTATGTCAACTTTG-TTTCCACACAAA-ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCTGTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGGTGGTTGGTCTGCCATGCCTACAGCGAATGAAGATAGGCTAAGTCCGAGTTTAAGACCAGCACTT]
[+] EMBL AI395043 [TTTTTTTTTTTTTTTTTTTTTTTACATTTGAATATAATTATTTGAAAATCTGGTTTTCAGCCCACATTTGACTTCACATAAAATCACAGGTCCTCGTCACCTTCATCCGGAAGAGGAGCCTCGGCAGCCATCTGAATTTCTTGCTCATATTGCCGAACCAAGTAGGGGTCGATTTGGATTTCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTTCCCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTGTTTTCCACACAAA ACAATCGGTA ATT ]
[+] EMBL AI395466 [ TTTTTTTTTTTTTTTTACATTTGAATATAATTATTTGAAAATCTGGTTTTCAGCCCACATTTGACTTCACATAAAATCACAGGTCCTCGTCACCTTCATCCGGAAGAGGAGCCTCGGCAGCCATCTGAATTTCTTGCTCATATTGCCGAACCAAGTAGGGGTCGATTTGGATTTCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTTCCCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TT ]
[-] EMBL CD157944 [ CAAGTAGGGGTCGATTTGGATTTCTGGAGGCTGCATTGCAGGCATATCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGG TTATATT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATTGCA ]
[-] EMBL CD179361 [ CTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAG ]
[-] EMBL CD179380 [ CTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAG ]
[+] EMBL CD133134 [ tctgtcCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATATTATTGT ]
[+] EMBL CD063296 [ GCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGGTTTTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACG ]
[+] EMBL CD150636 [ atGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCTAATCTTGTATGTCAACTTTG TTTCCACACAAATACAATCGGTATATTTTCGCAGACGCGAAC ]
[-] EMBL CD130533 [ anGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACCTGTCACATCGAACATAATTATTGCA ]
[+] EMBL CD177699 [ GCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCC ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATTGCA ]
[+] EMBL CD063563 [ TACGAACTCGAGG TTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCTGTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATNTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATC ]
[-] EMBL CD113076 [ CGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCTGTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGAAACCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGG ]
[-] EMBL CD071770 [ CGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCTGTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGATATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGG ]
[+] EMBL CD199392 [ GTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGGTGGTTGGTCTGCCATGCCTACAGCGAATGAAGATAGGCTAAGTCCGAGTTTAAGACCAGCACTT]
consensusID : consensus_10339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence
[CGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCACGTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATTCGTTTCACGAATGTTTCTTTCCTTACCACCTTCCTTCTTTCTCT]
[-] EMBL CD144499 [CGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCACGTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATTCGTTTCACGAATGTTTCTTTCCTTACCACCTTCCTTCTTTCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10339#0 TTTTTTTTTTTTTTTTTTTTTTTACATTTGAATATAATTATTTGAAAATCTGGTTTTCAG 60
consensus_10339#1 ------------------------------------------------------------
consensus_10339#0 CCCACATTTGACTTCACATAAAATCACAGGTCCTCGTCACCTTCATCCGGAAGAGGAGCC 120
consensus_10339#1 ------------------------------------------------------------
consensus_10339#0 TCGGCAGCCATCTGAATTTCTTGCTCATATTGCCGAACCAAGTAGGGGTCGATTTGGATT 180
consensus_10339#1 ------------------------------------------------------------
consensus_10339#0 TCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTA 240
consensus_10339#1 ------------------------------------------------------------
consensus_10339#0 CGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAA 300
consensus_10339#1 ------------------------------------------------------------
consensus_10339#0 TATTGTAGGTTTTTTTTCCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCTATCTTGT 360
consensus_10339#1 ------------------------------------------------------------
consensus_10339#0 ATGTCAACTTTGTTTCCACACAAAACAATCGGTATATTTTCGCAGACGCGAACCAAATCC 420
consensus_10339#1 ------------------------------------------------------------
consensus_10339#0 CTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATT 480
consensus_10339#1 --------------------------CGTGACACGACTTGTCACATCGAACATAATTATT 34
**********************************
consensus_10339#0 GCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCT 540
consensus_10339#1 GCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCC---- 90
********************************************************
consensus_10339#0 GTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGAAATCAAGAGGGTGAACT 600
consensus_10339#1 -----------------------------ACGTGTTGTGTGGAAATCAAGAGGGTGAACT 121
*******************************
consensus_10339#0 TCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACG 660
consensus_10339#1 TCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATAT-TCGTTTCACG 180
************************************************* **********
consensus_10339#0 AATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGGT 720
consensus_10339#1 AATGTT-TCTTTCCT-TACCACC--TTCCTTCTTTCTCT--------------------- 215
****** ******** ******* *** * **
consensus_10339#0 GGTTGGTCTGCCATGCCTACAGCGAATGAAGATAGGCTAAGTCCGAGTTTAAGACCAGCA 780
consensus_10339#1 ------------------------------------------------------------
consensus_10339#0 CTT 783
consensus_10339#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||