These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 382 fasta sequence [TTGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC-AATATGAATACATGTATTTTGGG-TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC-AAAAAATAACAGAACTATGTGATATTTGTTGG-TCT-CTTTGT-CTGGTTGCG-TTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTGTCTTTCCAATGGTTTGTTATCATATGTCTACCTATAAAT] [+] EMBL CD141783 [TTGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTGTCTTTCCAATGGTTTGTTATCATATGTCTAC ] [-] EMBL CD141768 [ TGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTCCCTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTTTCTTTCCAATGGTTTGTTATCATATGTCTACC ] [-] EMBL CD141762 [ TGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTTTCTTTCCAATGGTTTGTTATCATATGTCTACC ] [+] EMBL CD154524 [ ATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGAGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTGTCTTTCCAATGGTTTGTTATCATATGTCTACCTATAAAT] [+] EMBL BG931574 [ tTCTGCTACTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGCGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATATTGGG TCTAATTGTATACGTTGTCTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTCAAAAAAATAACAGAACTATGTGATATCTGTTGG TCT CTTTGT CTGGTTGCG TATCCCCATTTCCTTCATCAAGACtct ] [+] EMBL CD060037 [ CTGCTAGTCAGCGGATGAAAGTACTAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCA ] [+] EMBL CD059781 [ CTGCTAGTCAGCGGATGAAGGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAAACTCTCAGTCC AATATGAATACATGTATca ] [-] EMBL CD157665 [ CGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATCTC AAAAAATAACAGTACTATGTGATATTTGTTGG TCT CTTT ] [-] EMBL CD063077 [ GTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAGAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTa ] [-] EMBL CD062961 [ GTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTAGT CTGG ] [-] EMBL CD063063 [ GTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGGTTCTCCTTTGTNCTGGTTGCGTTTTCCCCATTTa ] [-] EMBL CD062973 [ GTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTagct ] [-] EMBL CD059986 [ gtTCAGTCCAAATATGAATACATGTATTTTGGGTTCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCCACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCAT ] [+] EMBL CD193628 [ GTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTA ] consensusID : consensus_10342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [AGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGGTAATCTATCTGGTTCGTTATAACTCGTGTAGAAGTCCTCAGACTCTCAGTCCAATATGAATACATGTATTTTGGGTCTAATTGTTTTCGT] [+] EMBL CD181366 [AGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGGTAATCTATCTGGTTCGTTATAACTCGTGTAGAAGTCCTCAGACTCTCAGTCCAATATGAATACATGTATTTTGGGTCTAATTGTTTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10342#0 TTGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGA 60 consensus_10342#1 ----------------------------------------------AGTACAAAATGGGA 14 ************** consensus_10342#0 AGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTG------------- 107 consensus_10342#1 AGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGGTAATCTATCTGG 74 *********************************************** consensus_10342#0 -------------------AAGTCCTCAGACTCTCAGTCCAATATGAATACATGTATTTT 148 consensus_10342#1 TTCGTTATAACTCGTGTAGAAGTCCTCAGACTCTCAGTCCAATATGAATACATGTATTTT 134 ***************************************** consensus_10342#0 GGGTCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAG 208 consensus_10342#1 GGGTCTAATTGTTTTCGT------------------------------------------ 152 ****************** consensus_10342#0 AATGGCATTCTGATTCGATAACTCAATGATTTCAAAAAATAACAGAACTATGTGATATTT 268 consensus_10342#1 ------------------------------------------------------------ consensus_10342#0 GTTGGTCTCTTTGTCTGGTTGCGTTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTC 328 consensus_10342#1 ------------------------------------------------------------ consensus_10342#0 AGTACTTTTGTTGTGTCTTTCCAATGGTTTGTTATCATATGTCTACCTATAAAT 382 consensus_10342#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||