These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [CAAAAGTCGTTATATTACTTTTTAAATCACAATGAACTACATACTTCAATTATGCTACGTCATTTGTTTATTCAGCGAGAAAGCCTCTCTCATAAAAAGCAACTTCCTCATTCGTCATCCTTTTCCTCCGAAACTTCGGGTTAATTAGGGAGGGTTCTACTGCCAGCTCTGGTGGCACTGATGATTTTACAACAAAAGTTGAGTTGATGCGAGTTTGTGGATCTCCAAAGTTTCTCGAACTTGAAGAAAACATATGTTAGTCGTATAAATTACATGTTTATGGAGTTTTTCAGCTGACTGCGAAACTTTATTAGTGGCACATGTTTTTTAACCTAAAAGACAGTCATAGTAATCACATTAATCCCACCAATGCGGCTAGATTAGACATTTTCAAGTGACCGCGTGTTTTCTAGAAGGT] [+] EMBL AW016954 [CAAAAGTCGTTATATTACTTTTTAAATCACAATGAACTACATACTTCAATTATGCTACGTCATTTGTTTATTCAGCGAGAAAGCCTCTCTCATAAAAAGCAACTTCCTCATTCGTCATCCTTTTCCTCCGAAACTTCGGGTTAATTAGGGAGGGTTCTACTGCCAGCTCTGGTGGCACTGATGATTTTACAACAAAAGTTGAGTTGATGCGAGTTTGTGGATCTCCAAAGTTTCTCGAACTTGAAGAAAACATATGTTAGTCGTATAAATTACATGTTTATGGAGTTTTTCAGCTGACTGCGAAACTTTATTAGTGGCACATGTTTTTTAACCTAAAAGACAGTCATAGTAATCACATTAATCCCACCAATGCGGCTAGATTAGACATTTTCAAGTGACCGCGTGTTTTCTAGAAGGT] consensusID : consensus_1035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [NANAGTCGTTAGATTGCGNTATNANTCACATGGACTACATACTTCAATTATGCTACGTCANTTGTTTATTCAGACGAGANAGCCTCTCTCAGNGNAAACAACNTCCTCAATCGTNATCCTTTTCCTCCGAAACNTCGGGATAATTAGGGAGGGTTCTACTGCCAACTCTGGTGGCACTGATGATATAACAACNAGAGNTGAGTTGATGCGAGNTGTGGATCNC] [-] EMBL SM7072 [NANAGTCGTTAGATTGCGNTATNANTCACATGGACTACATACTTCAATTATGCTACGTCANTTGTTTATTCAGACGAGANAGCCTCTCTCAGNGNAAACAACNTCCTCAATCGTNATCCTTTTCCTCCGAAACNTCGGGATAATTAGGGAGGGTTCTACTGCCAACTCTGGTGGCACTGATGATATAACAACNAGAGNTGAGTTGATGCGAGNTGTGGATCNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1035#0 CAAAAGTCGTTATATTACTTTTTAAATCACAATGAACTACATACTTCAATTATGCTACGT 60 consensus_1035#1 -NANAGTCGTTAGATTGCGNTATNANTCACA-TGGACTACATACTTCAATTATGCTACGT 58 * ******** *** * * * * ***** ** ************************* consensus_1035#0 CATTTGTTTATTCAG-CGAGAAAGCCTCTCTCATAAAAAGCAACTTCCTCATTCGTCATC 119 consensus_1035#1 CANTTGTTTATTCAGACGAGANAGCCTCTCTCAGNGNAAACAACNTCCTCAATCGTNATC 118 ** ************ ***** *********** ** **** ****** **** *** consensus_1035#0 CTTTTCCTCCGAAACTTCGGGTTAATTAGGGAGGGTTCTACTGCCAGCTCTGGTGGCACT 179 consensus_1035#1 CTTTTCCTCCGAAACNTCGGGATAATTAGGGAGGGTTCTACTGCCAACTCTGGTGGCACT 178 *************** ***** ************************ ************* consensus_1035#0 GATGATTTTACAACAAAAGTTGAGTTGATGCGAGTTTGTGGATCTCCAAAGTTTCTCGAA 239 consensus_1035#1 GATGATATAACAACNAGAGNTGAGTTGATGCGAGNT-GTGGATCNC-------------- 223 ****** * ***** * ** ************** * ******* * consensus_1035#0 CTTGAAGAAAACATATGTTAGTCGTATAAATTACATGTTTATGGAGTTTTTCAGCTGACT 299 consensus_1035#1 ------------------------------------------------------------ consensus_1035#0 GCGAAACTTTATTAGTGGCACATGTTTTTTAACCTAAAAGACAGTCATAGTAATCACATT 359 consensus_1035#1 ------------------------------------------------------------ consensus_1035#0 AATCCCACCAATGCGGCTAGATTAGACATTTTCAAGTGACCGCGTGTTTTCTAGAAGGT 418 consensus_1035#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||