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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1144 fasta sequence
[GAGGCCANAATTTGGCACGAGGCGCACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT-CTAATAAAATCGAT]
[+] EMBL CD081059 [GAGGCCANAATTTGGCACGAGGCGCACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTC AATGTGGCCTAAAGAAG ACGTGGTAGTGTACCCGAAGGCACTG ]
[+] EMBL CD082338 [ tnacatCGGACACTGTATTTAGTGATGAACCTTTACTGAAACTTAATGACCCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGTAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTCTCCTCAATTAANAATACGTGTTGAAAGCAGAGCTGATGATACTTATCCAATTGT ]
[-] EMBL CD073992 [ ACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT CTAATAAAATCGAT]
[-] EMBL CD074882 [ TATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT CTAATAAAATCGAT]
[-] EMBL CD075210 [ ATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATT ]
[-] EMBL CD076636 [ AATC TTTTCCTCAATTAAAAATACGTG TGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT CTAATAAAATCGAT]
[-] EMBL CD077185 [ ATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT CTAATAAAATCGAT]
[-] EMBL CD075937 [ AAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCTAATAATAAAATCGAT]
[-] EMBL CD117143 [ CTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAA ]
consensusID : consensus_10351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[TACGGGCCAANAATTTGGCACGAGGATTTTCGGAACCTTTGTGGCCAGTTGCTTCTGTGTTAGCATATTCATAATAATCGCTTTTTTGCCTTCCTAACAGTCATCTGTCTGTATTTTAGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGGTATATGCATGGTGCCTTGTCACCAATAAGCCAGTTGGAATGGATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGGAAAATCAACGGGGAGAAAACTTCTTAAAAGAAAAGGTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAG]
[+] EMBL CD079735 [TACGGGCCAANAATTTGGCACGAGGATTTTCGGAACCTTTGTGGCCAGTTGCTTCTGTGTTAGCATATTCATAATAATCGCTTTTTTGCCTTCCTAACAGTCATCTGTCTGTATTTTAGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGGTATATGCATGGTGCCTTGTCACCAATAAGCCAGTTGGAATGGATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGGAAAATCAACGGGGAGAAAACTTCTTAAAAGAAAAGG ]
[+] EMBL CD081376 [ gagGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTAT GGTATATGCAT GTGCCTTGTCACCAATAAGCCAGTT GAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAAT GAAAATCAAC GGGAG AAACTTCTT AAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAG]
consensusID : consensus_10351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CTCGAGGCCAATAATTCGGCACGAGGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGTATCATCCATATTTATTAATTTTTAATTATTTAGTTCCACCTTTCTGTTTCACTGAAATACAGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGGCAAGCTGAACATTATGAAACTAA]
[+] EMBL CD082835 [CTCGAGGCCAATAATTCGGCACGAGGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGTATCATCCATATTTATTAATTTTTAATTATTTAGTTCCACCTTTCTGTTTCACTGAAATACAGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGGCAAGCTGAACATTATGAAACTAA]
consensusID : consensus_10351#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[CCGGGCCAAAAATTCGGCACGAGGCGATTTGTTGCATGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCNAAGCTGAACATTATGAAACTAAACTGNCAAATCTTTTTCCTCAATTAAAAATACG]
[+] EMBL CD083064 [CCGGGCCAAAAATTCGGCACGAGGCGATTTGTTGCATGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCNAAGCTGAACATTATGAAACTAAACTGNCAAATCTTTTTCCTCAATTAAAAATACG]
consensusID : consensus_10351#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[TTCTATAGTGTTGTCTTATGCTTAAATATTGTTGCACCTCTATATAATGCGAATCTGACTTTCATCTACCACCACTCGAATTACTCATTTATTTGGCTTAGAATAAATTGGTACTCGTTATTTAGACATTATATGAATAATTATAGCGTGGAACTAAAAAAGGCGTTTTTTGATAGTCTAAATAATATTTCAATGAATTCAGGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAGGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACG]
[-] EMBL CD165434 [TTCTATAGTGTTGTCTTATGCTTAAATATTGTTGCACCTCTATATAATGCGAATCTGACTTTCATCTACCACCACTCGAATTACTCATTTATTTGGCTTAGAATAAATTGGTACTCGTTATTTAGACATTATATGAATAATTATAGCGTGGAACTAAAAAAGGCGTTTTTTGATAGTCTAAATAATATTTCAATGAATTCAGGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAGGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACG]
consensusID : consensus_10351#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[TCGCAGGCAAGAATTCGTCACGAGGCTTTTTCAAAGCTGTTGGGCGATTAATAAAAGTACTTCGTCATGATGTATATTATTGAGAAATGGGAACGTCCACGACAAAGAACGTATACATACGAAACAAGAGCAACGAAAAATGCCTTCTTTGGTACCACCTACAATATTAGTTTAAAGTATTTGTATTTTGTTTTAATAGGTTTGCTGTTATTCTGAAATTCATGTGATTTTTTTTCGAAATTTTTACTCAGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTT]
[+] EMBL CD078143 [TCGCAGGCAAGAATTCGTCACGAGGCTTTTTCAAAGCTGTTGGGCGATTAATAAAAGTACTTCGTCATGATGTATATTATTGAGAAATGGGAACGTCCACGACAAAGAACGTATACATACGAAACAAGAGCAACGAAAAATGCCTTCTTTGGTACCACCTACAATATTAGTTTAAAGTATTTGTATTTTGTTTTAATAGGTTTGCTGTTATTCTGAAATTCATGTGATTTTTTTTCGAAATTTTTACTCAGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10351#1 TACGGGCCAANAATTTGGCACGAGGATTTTCGGAACCTTTGTGGCCAGTTGCTTCTGTGT 60
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 ------------------------------------------------------------
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 TAGCATATTCATAATAATCGCTTTTTTGCCTTCCTAACAGTCATCTGTCTGTATTTTAGG 120
consensus_10351#3 -----------------CCGGGCCAAAAATTCGGCACGAGGCGATTTGTTGCAT----GG 39
consensus_10351#2 -----------------------------CTCGAGGCCAATAATTCGGCACGAG----GG 27
consensus_10351#0 --------------------------------------------GAGGCCANAATTTGGC 16
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 AGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTG 180
consensus_10351#3 AGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTG 99
consensus_10351#2 AGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTG 87
consensus_10351#0 ACGAGGCGCACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTG 76
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 GCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATT 240
consensus_10351#3 GCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATT 159
consensus_10351#2 GCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATT 147
consensus_10351#0 GCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATT 136
consensus_10351#4 ----------------------------------------TTCTATAGTGTTGTCTTATG 20
consensus_10351#5 -----------------------------------------------------TCGCA-G 6
** *
consensus_10351#1 GCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTA--AGTCAAA 298
consensus_10351#3 GCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTA--AGTCAAA 217
consensus_10351#2 GCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTA--AGTCAAA 205
consensus_10351#0 GCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTA--AGTCAAA 194
consensus_10351#4 CTTAAATATTGTTGCACCTCTATATAATGCGAATCTGACTTTCATCTACCACCACTCGAA 80
consensus_10351#5 GCAAGAATTCGTCACGAGGCTTTTTCAAAGCTGTTGGGCGATTAATAAAAGTACTTCGTC 66
* * * * * * * **
consensus_10351#1 TCAAT-GTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGGTA 357
consensus_10351#3 TCAAT-GTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGG-TA 275
consensus_10351#2 TCAAT-GTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGG-TA 263
consensus_10351#0 TCAAT-GTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGG-TA 252
consensus_10351#4 TTACTCATTTATTTGGCTTAGAATAAATTGGTA----CTCGTTATTTAGACAT-----TA 131
consensus_10351#5 ATGAT-GTATATT----ATTGAG-AAATGGGAAC--GTCCACGACAAAGAAC-------G 111
* * * * * ** ** ** * * *
consensus_10351#1 TATGCATGGTGCCTTGTCACCAATAAGCCAGTTGGAATGGATTAGAAACTATTGGACTTG 417
consensus_10351#3 TATGCATG-TGCCTTGTCACCAATAAGCCAGTTG-AATGAATTAGAAACTATTGGACTTG 333
consensus_10351#2 TATGCATG-TGCCTTGTCACCAATAAGCCAGTTG-AATGAATTAGAAACTATTGGACTTG 321
consensus_10351#0 TATGCATG-TGCCTTGTCACCAATAAGCCAGTTG-AATGAATTAGAAACTATTGGACTTG 310
consensus_10351#4 TATGAATA----ATTATAGC----------GTGGAACTAAAAAAGGCGTTTTTTGATAGT 177
consensus_10351#5 TATACATA------CGAAAC---------AAGAGCAACGAAAAATGCCTTCTTTGGTA-- 154
*** ** * * * * * * ** *
consensus_10351#1 CTG--------------------------------------------------------- 420
consensus_10351#3 CTG--------------------------------------------------------- 336
consensus_10351#2 CTGTATCATCCATATTTATTAATTTTTAATTATTTAGTTCCACCTTTCTGTTTCACTGAA 381
consensus_10351#0 CTG--------------------------------------------------------- 313
consensus_10351#4 CTA--------------------------------------------------------- 180
consensus_10351#5 CCA--------------------------------------------------------- 157
*
consensus_10351#1 ------ATTCAAAGACATTAAATGGAAAATCAACGGGGAGAAAACTTCTTAAAAGAAAAG 474
consensus_10351#3 ------ATTCAAAGACATTAAATG-AAAATCAACGGGAG--AAACTTCTTAAA-GAAATG 386
consensus_10351#2 ATACAGATTCAAAGACATTAAATG-AAAATCAACGGGAG--AAACTTCTTAAA-GAAATG 437
consensus_10351#0 ------ATTCAAAGACATTAAATG-AAAATCAACGGGAG--AAACTTCTTAAA-GAAATG 363
consensus_10351#4 -----AATAATATTTCAATGAATT-CAGGTTACTCGTGATCGAGTTCTTCAAATGTGGCC 234
consensus_10351#5 --------CCTACAATATTAGTTT--AAAGTATTTGTATT----TTGTTTTAA------- 196
* * * * * * * * * **
consensus_10351#1 GT-GAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTAC 533
consensus_10351#3 TT-GAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTAC 445
consensus_10351#2 TT-GAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTAC 496
consensus_10351#0 TT-GAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTAC 422
consensus_10351#4 TAAGGAAGAACGTGGTAGTGTACCCGAAGGCAC---TGGTCTTGGTTCTG-----GCTAT 286
consensus_10351#5 ------TAGGTTTGCTGTTATTCTGAAATTCAT--GTGATTTTTTTTCGAAAT-TTTTAC 247
** * * * ** ** * * **
consensus_10351#1 CGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGT---TATATCTCATGATTCAGC 590
consensus_10351#3 CGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGT---TATATCTCATGATTCAGC 502
consensus_10351#2 CGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGT---TATATCTCATGATTCAGC 553
consensus_10351#0 CGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGT---TATATCTCATGATTCAGC 479
consensus_10351#4 CCAGGTGAT-CCCGTTA---CTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGG 342
consensus_10351#5 TCAGAT----CCCGTTA---CTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTT--- 297
** * * ** * **** * * ** ** *** ** * **
consensus_10351#1 CATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGA 650
consensus_10351#3 CATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGA 562
consensus_10351#2 CATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGA 613
consensus_10351#0 CATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGA 539
consensus_10351#4 CTTCCCATCTCTT--GTGAGATCTAGTTGGTCAACCTCATCTTCTCTA---TTAGACCAA 397
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 TACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAA 710
consensus_10351#3 TACTGTTGGCNAAGCTGAACATTATGAAACTAAACTGNCAAATCTTTTTCCTCAATTAAA 622
consensus_10351#2 TACTGTTGGGCAAGCTGAACATTATGAAACTAA--------------------------- 646
consensus_10351#0 TACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAA 599
consensus_10351#4 CA-TGGTGTATCAGTTAGGTGGGAAGATGACG---------------------------- 428
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 AATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTT 770
consensus_10351#3 AATACG------------------------------------------------------ 628
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 AATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTT 659
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 TGCAAAAGTTACTCGTGATCGAG------------------------------------- 793
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 TGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGT 719
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 ------------------------------------------------------------
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 ACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTT 779
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 ------------------------------------------------------------
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 ACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAAC 839
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 ------------------------------------------------------------
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 CTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACA 899
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 ------------------------------------------------------------
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 CGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTG 959
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 ------------------------------------------------------------
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 CAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACA 1019
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 ------------------------------------------------------------
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 GAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTAT 1079
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 ------------------------------------------------------------
consensus_10351#3 ------------------------------------------------------------
consensus_10351#2 ------------------------------------------------------------
consensus_10351#0 ATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCTCTAATAAAA 1139
consensus_10351#4 ------------------------------------------------------------
consensus_10351#5 ------------------------------------------------------------
consensus_10351#1 -----
consensus_10351#3 -----
consensus_10351#2 -----
consensus_10351#0 TCGAT 1144
consensus_10351#4 -----
consensus_10351#5 -----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||