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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1036 fasta sequence
[TTTGTTTGACGGCGGCTGTTACAAAGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT-AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA-AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT-AAGGATGGGCG-TATTAAAGTAGTAAACACGTTGG-AAAGTCGTTTAGATC-AAATTAGTGAACATTTAATGCCACAACTACGTG-AAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGC-AATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTCTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTCTAGCATAATAAATATTTATTTTTATTTTCTT-TCAGGATCTGT-GTTTATTACACTATCTAAATACTT-GATTTATTATTATTACCATTTGNT-GTATT-GTTACATGTAT-GGAATTC-GAAACATTTCAAT-TTTACCATAAATACTACTTTATGATTTTAAATTTACTTTTTTACTTAAATTCATTCTGTGAACCTTTTTTGTTAAATCAAATACAATGTCGG]
[-] EMBL CD124337 [TTTGTTTGACGGCGGCTGTTACAAAGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTG ]
[+] EMBL CD170312 [ TCCCTCCCATTTTTTT AGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAA ]
[+] EMBL CD078762 [ CCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGCG TATTANAGTAGTANACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AA ]
[+] EMBL CD129655 [ ATGGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATATATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTTAAAAAAATCAGTCTCG ]
[+] EMBL CD134856 [ GTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AA ]
[+] EMBL CD195860 [ AGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTTAAAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGGACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCANAAATGT ]
[+] EMBL CD185599 [ TCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGCG TATTAAAGTAGTAAACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AAATTT ]
[+] EMBL CD178590 [ AATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATCGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTTACAATTGATAA ]
[+] EMBL CD078682 [ AAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGCG TATTAAAGTAGTAAACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGC AATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTCTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTCTAGCATAATAAATATTTATTTTTATTTTCTT TCAGTATCTGT GTTTATTACACTATCTNAATACTT GATTTATTATTATTACCATTTGNT GNATT GNTACATG ]
[+] EMBL CD162853 [ TGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCT ]
[+] EMBL SM595 [ gnTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTNCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGCG TATTAAAGTAGTAAACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGCAAATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTCTC ]
[-] EMBL CD073145 [ ACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGGG TATTAAAGTAGTAAACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGC AATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTTTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTTTAGCATAATAAAAATTTATTTTTATTTTCTT TCAGGATCTGT GTTTATTACACTATTTAAATACTT GATTTATTATTATTACCATTTGTT GTATT GTTACATGTAT GGAATTC GAAACATTTCAAT TTTACCATAAATACTACTTTATGATTTTAAATTTACTTTTTTACTTAAATTCATTCTGTGAACCTTTTTTGTTAAATCAAATACAATGTCGG]
[+] EMBL SM888 [ AATAAAGGATGGGCGTTATTAAAGTAGTAAACACGTTGGNAAAGTCGTTTAGATCNAAATTAGTGAACATTTAATGCCACAACTACGTGAAAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGC AATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTCTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTCTAGCATAATAAATATTTATTTNTATTTTCTTNTCAGNATCTGTGGTTTATTACACTATCTAAATACTTGGATTTATTATTATTACCATTTGGTGGTATTGGTTACATGTATGGGAATTCGGAAACAATTCAATCTTTACCAata ]
consensusID : consensus_10357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[TTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAACCGCTGTNACAATGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAG]
[+] EMBL SM570 [TTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAACCGCTGTNACAATGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAG]
consensusID : consensus_10357#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[CCAGAATTCGGCACGAGGGCCGTCAAGTTGACCGTGATTTAACGCAAAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTCTACAATAAGGATGGGCGTATTAAAGTAGTAAACACGTTGGAAAGTCGTTTAGATCAAATTAGTGAACATTTAATGCCACAACTACGTGAAATTTTATTCGGAGTAAATGAA]
[+] EMBL CD077796 [CCAGAATTCGGCACGAGGGCCGTCAAGTTGACCGTGATTTAACGCAAAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTCTACAATAAGGATGGGCGTATTAAAGTAGTAAACACGTTGGAAAGTCGTTTAGATCAAATTAGTGAACATTTAATGCCACAACTACGTGAAATTTTATTCGGAGTAAATGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10357#0 TTTGTTTGACGGCGGCTGTTACAAAGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTA 60
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 TAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTA 120
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 TAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTC 180
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 AAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAA 240
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 AAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTTAAAAAATCAGT 300
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 CTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCC 360
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 GGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGAC 420
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ---------------------------------------TTAAATGATACAGAAGTACAA 21
consensus_10357#0 TTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTC-AA 479
consensus_10357#2 --------------------------------CCAGAATTCGGCA-CGAGGGCCGTC-AA 26
consensus_10357#1 CGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAA 81
**** * * * * * **
consensus_10357#0 GTTGACCGTGATTTAACGCAAAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAG 539
consensus_10357#2 GTTGACCGTGATTTAACGCAAAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAG 86
consensus_10357#1 ATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAA-AAGTCCCGTCTAGTACAAAACCA 140
* ** * ** * *** * **** ** * * * *** *
consensus_10357#0 ACGGGTACTGATTGCAGAGTCACAATTGATAAC---AACTATTTACCTGACAGCCTCGCT 596
consensus_10357#2 ACGGGTACTGATTGCAGAGTCACAATTGATAAC---AACTATTTACCTGACAGCCTCGCT 143
consensus_10357#1 ACGGCTCAAAATAATGGAGTACTACTCAACCGCTGTNACAATGTCCCTCCCATTTTTTTG 200
**** * ** **** * * * * ** ** * *** ** *
consensus_10357#0 GGTGG---AATTGAACTTTACAATAAGGATGGGCG-TATTAAAGTAG-----TAAACACG 647
consensus_10357#2 GGTGG---AATTGAACTCTACAATAAGGATGGGCG-TATTAAAGTAG-----TAAACACG 194
consensus_10357#1 AGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCG 260
* *** * * ** * * * * ** ***** *** **
consensus_10357#0 TTG---GAAAGTCGTT-TAGATCAAATTAGTGAACATTTAATGCCACAACTACGTG--AA 701
consensus_10357#2 TTG---GAAAGTCGTT-TAGATCAAATTAGTGAACATTTAATGCCACAACTACGTG--AA 248
consensus_10357#1 CCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAA 320
** * * ** **** ** * * * ** ** ** ** **
consensus_10357#0 ATTTTATTCGGAGT---AAATGAAGGTCGAAAATTCCGCAATTAATTAGCTTATTAATCC 758
consensus_10357#2 ATTTTATTCGGAGT---AAATGAA------------------------------------ 269
consensus_10357#1 AGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAAT 380
* * **** **** *
consensus_10357#0 AATTATCTATTTCCATTTCTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTC 818
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 AATGGAG----------------------------------------------------- 387
consensus_10357#0 TAGCATAATAAATATTTATTTTTATTTTCTTTCAGGATCTGTGTTTATTACACTATCTAA 878
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 ATACTTGATTTATTATTATTACCATTTGNTGTATTGTTACATGTATGGAATTCGAAACAT 938
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 TTCAATTTTACCATAAATACTACTTTATGATTTTAAATTTACTTTTTTACTTAAATTCAT 998
consensus_10357#2 ------------------------------------------------------------
consensus_10357#1 ------------------------------------------------------------
consensus_10357#0 TCTGTGAACCTTTTTTGTTAAATCAAATACAATGTCGG 1036
consensus_10357#2 --------------------------------------
consensus_10357#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||