These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1152 fasta sequence [ACAAGAAGCATTGGCTCGCGGTGACGATGATGAGGCAAAAGAAAACGTGCAGACTAAAGAAACCGATGAAAATCCGGGGAAGAAGAAAGCCAAACGAAGAAAGCTCAAACGTAGTGCTTCCATAACGATCACGGGTAAACGAAAGCGCCTGGGTGGTATCGGTTCAGGTGATGTTGCAAATGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCATTCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCACCAATTAAGGATCCGGACCCGCTTATTAACTCAGAGCTAATGGAATGTCGTGGTGCTTTCTTAGAAAAAGCTCGTGAAAAGCACCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATATGCATGTAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCG-AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTACAGCTGTTACTACTGTTTCCTACAACC-TACCTATGCCNCA-TCACGAAGTCAATCTTCTATC] [-] EMBL CD125005 [ACAAGAAGCATTGGCTCGCGGTGACGATGATGAGGCAAAAGAAAACGTGCAGACTAAAGAAACCGATGAAAATCCGGGGAAGAAGAAAGCCAAACGAAGAAAGCTCAAACGTAGTGCTTCCATAACGATCACGGGTAAACGAAAGCGCCTGGGTGGTATCGGTTCAGGTGATGTTGCAAATGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCATTCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCAC ] [+] EMBL CD186041 [ TTCAGGTGATGTTGCAAATGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCATTCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCACCAATTAAGGATCCGGACCCGCTTATTAACTCAGAGCTAATGGAATGTCGTGGTGCTTTCTTAGAAAAAGCTCGTGAAAAGCACCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGAATA ] [-] EMBL CD183680 [ TTCAGGTGATGTTGCAAATGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCATTCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCACCAATTAAGGATCCGGACCCGCTTATTAACTCAGAGCTAATGGAATGTCGTGGTGCTTTCTTAGAAAAAGCTCGTGAAAAGCACCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGA ATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACT ] [+] EMBL CD095120 [ CTTAGAAAAAGCTCGTGAAAAGCACCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATACGCATGTAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCANACAAAC ] [+] EMBL CD115732 [ ATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTTGAAACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATATGCATGTAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTCGCGATTCATCTATTATTTATGTTGCT ] [+] EMBL CD169501 [ TTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAGATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATATGCATGTAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATT ] [-] EMBL CD129402 [ ATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAGATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTNANNGTNNNNNNCCNNATTTTTGTGTTTATTCATGTAAGACAAANAAATATCAGGTGCAACACTTTTGTGTACATTCAACACACAGAAAAACAG GTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACATGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATAT ] [+] EMBL CD127291 [ anACACTTTCGTGTTCATTCAACAGATCG AATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAGGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTACGGCTGTTACTACTGTTTC ] [+] EMBL CD127209 [ TCGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTCACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTACAGCTGTTACTACT ] [-] EMBL CD128042 [ CGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTACAGCTGTTACTACTGTTTCCTACAACC TACCGATTCNNCA ] [-] EMBL CD127949 [ CGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTGGGCACCATTTGCTTCTACAGCTGTTAC A TGTTTCCTACAACC TACCTATGgct ] [-] EMBL CD066435 [ G AAATCAGTGTTCTGTTNGTCGATTCATCTATTATTTATGTGGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGTATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAACCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTAC ] [-] EMBL CD153193 [ CATCTATTATGTATGTTGCTATCATTCCAAAGCTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAGCAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACGATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTATACAGCTGTTACTACTGTTTCCTACAACCTTACCTCT CCACATTCACGAAGTCAATCTTCTATC] consensusID : consensus_10368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [AGCCGATGCAGGTGACGTCATTATTCGTGTTCTTGCGGCAGCAGATAAAACTGTTGAAGTTAAATCTGGTATGAAAGCTCGGTTCTGTGATAACGGAGAAATGCCTGAGTCTTTTCCGTACAGAGTGAAAGCCATTTTCGCATTTCAGGAAATCGACGGTCAGGAAGTATGTTTTTTTGGTCTTCACGTTCAGGAATATGGATCAGAATGCCCACTTCCTAATACCAGAAGGGTTTATGTGGCTTATTTAGATTCCGTTTACTTTTTTCGTCCTAAGCAATTTCGCACAGAGATATATCATGAACTTTTGGTTGGTTACATTCACTATGCAAAGTTACTTGGTTTCACAATGGCTCATATATGGGCTTGTCCGCCTAGCGAAGGTGATGATTACATTTTTCATATGCATCCACCTGATCAG] [+] EMBL CD179838 [AGCCGATGCAGGTGACGTCATTATTCGTGTTCTTGCGGCAGCAGATAAAACTGTTGAAGTTAAATCTGGTATGAAAGCTCGGTTCTGTGATAACGGAGAAATGCCTGAGTCTTTTCCGTACAGAGTGAAAGCCATTTTCGCATTTCAGGAAATCGACGGTCAGGAAGTATGTTTTTTTGGTCTTCACGTTCAGGAATATGGATCAGAATGCCCACTTCCTAATACCAGAAGGGTTTATGTGGCTTATTTAGATTCCGTTTACTTTTTTCGTCCTAAGCAATTTCGCACAGAGATATATCATGAACTTTTGGTTGGTTACATTCACTATGCAAAGTTACTTGGTTTCACAATGGCTCATATATGGGCTTGTCCGCCTAGCGAAGGTGATGATTACATTTTTCATATGCATCCACCTGATCAG] consensusID : consensus_10368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [CGATCTCCGCGTCGGATGGCTTTCTTCTTCCCCGGATTTTCATCGGTTTCTTTAGTCTGCACGTTTTCTTTTGCCTCATCATCATCGTCACCGCGAGCCAATGCTTCTTGTTCCTGTTTTCTTTTAGCATCTTCTTCATCCATTTCCTTAAATATTTCTTCCAAAGTATTTGGCCAAAAGTCACCTTCGAAATAGGCAAGTTCAGATGGAGAGATCATATGGGACTCATTAGCATCCTGACAGATATCTTTGTAATCCACCACAATGCGTTCAATGAGTGCTTTTTTTAGCATTTTTTGATACCATTCTTGTAACCTCTTAGGTTTAGGAATTTTCTGATCAGGTGGATGCATATGAAAAATGTAATC] [+] EMBL CD111765 [CGATCTCCGCGTCGGATGGCTTTCTTCTTCCCCGGATTTTCATCGGTTTCTTTAGTCTGCACGTTTTCTTTTGCCTCATCATCATCGTCACCGCGAGCCAATGCTTCTTGTTCCTGTTTTCTTTTAGCATCTTCTTCATCCATTTCCTTAAATATTTCTTCCAAAGTATTTGGCCAAAAGTCACCTTCGAAATAGGCAAGTTCAGATGGAGAGATCATATGGGACTCATTAGCATCCTGACAGATATCTTTGTAATCCACCACAATGCGTTCAATGAGTGCTTTTTTTAGCATTTTTTGATACCATTCTTGTAACCTCTTAGGTTTAGGAATTTTCTGATCAGGTGGATGCATATGAAAAATGTAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10368#0 ACAAGAAGCATTGGCTCGCGGTGACGATGATGAGGCAAAAGAAAACGTGCAGACTAAAGA 60 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 AACCGATGAAAATCCGGGGAAGAAGAAAGCCAAACGAAGAAAGCTCAAACGTAGTGCTTC 120 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 CATAACGATCACGGGTAAACGAAAGCGCCTGGGTGGTATCGGTTCAGGTGATGTTGCAAA 180 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 TGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCAT 240 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 TCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCACCAATTAAGGATCCGGACCCGCT 300 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 TATTAACTCAGAGCTAATGGAATGTCGTGGTGCTTTCTTAGAAAAAGCTCGTGAAAAGCA 360 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 CCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATT 420 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 ACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGA 480 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 AACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAAC 540 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 CGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGG 600 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 ACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTG 660 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 ------------------------------------------------------------ consensus_10368#0 GGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATATGCATG 720 consensus_10368#2 ------------------------------------------------------------ consensus_10368#1 --------------------------------------------------------AGCC 4 consensus_10368#0 TAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCGAAATCAGTG 780 consensus_10368#2 --------CGATCTCCGCGTCGGATGGCTTTCTTCT----TCCCCGGATTTTCATCGGT- 47 consensus_10368#1 GATGCAGGTGACGTCATTATTCGTGTTCTTGCGGCAGCAGATAAAACTGTTGAAGTTAAA 64 ** * *** * * consensus_10368#0 TTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATT 840 consensus_10368#2 TTCT-TTAGTCTGCACGTTT-TCTTTTGCCTCATCATCATCG------TCACCGCGAGCC 99 consensus_10368#1 TCTGGTATGAAAGCTCGGTTCTGTGATAACGGAGAAATGCCTGAGTCTTTTCCGTACAGA 124 * * * * * * * * * ** consensus_10368#0 GAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCA 900 consensus_10368#2 --AATGCTTCTTGTTCCTGTTTTCT---TTTAGCATCTTCTTCATCCATTTCCTTAAATA 154 consensus_10368#1 GTGAAAGC-CATTTTCGCATTTCAGGAAATCGACGGTCAGGAAGTATGTTTTTTTGGTCT 183 * * * * * * consensus_10368#0 ACAACGCCTC-AA-ACAAACACAAATGTT-ACGCAGACGTAT-GGCCACGATGCAGCGCT 956 consensus_10368#2 TTTCTTCCAA-AGTATTTGGCCAAAAGTC-ACCTTCGAA-AT-AGGCAAGTTCAGATGGA 210 consensus_10368#1 TCACGTTCAGGAATATGGATCAGAATGCCCACTTCCTAATACCAGAAGGGTTTATGTGGC 243 * * * ** * ** * * * * * consensus_10368#0 GTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTC--AAAATTATCAACA 1014 consensus_10368#2 GAGATCATATGG----GACTCATTAGCATCCTGACAGATATCTTT--GTAATCCACCACA 264 consensus_10368#1 TTATTTAGATTCCGTTTACTTTTTT-CGTCCTAAGCAATTTCGCACAGAGATATATCATG 302 ** * * * * ** * ** * consensus_10368#0 ATGTTCGCAATCTTCGACATCTGATTGCATATCTTC-TCCTATGTCTGTACCTATGCAGT 1073 consensus_10368#2 ATGCGTTCAATGAGTG-CTTTTTTTAGCATTTTTTGATACCATTCTTGTAACCTCTTAGG 323 consensus_10368#1 AACTTTTGGTTGGTTACATTCACTATGCAAAGTTAC---TTGGTTTCACAATGGCTCATA 359 * * * *** * * * consensus_10368#0 CATCACCATTTGCTTCTACAGCTGTTACTACTGTTTCCTACAACCTACCTATGCCNCATC 1133 consensus_10368#2 TTTAGGAATTTTCTGATCAGGTGGATGCATATGAAAAATGTAATC--------------- 368 consensus_10368#1 TATGGGCTTGTCCGCCTAGCGAAGGTGATGATTACATTTTTCATATGCATCCACCTGATC 419 * * * * * * * * * * * consensus_10368#0 ACGAAGTCAATCTTCTATC 1152 consensus_10368#2 ------------------- consensus_10368#1 AG----------------- 421 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||