cluster # 1037

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1037 cluster # 1037 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1037#0 length = 555 sequences # 1

consensus_1037#1 length = 298 sequences # 1

consensusID : consensus_1037#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [CTTCTTCGGTCGATAAAACTCGCTGGAGGTTATCTGTAAAGCTCTTCATCCACTAAAATAAGCAGCCCCTGAAGCTTTTTCCTGTTATAGTTGTATTAACTTATCTTGTTATCAATGGGAAGCAGTTGCACTGATCAAACAAGTCAGTTTATGAATGAATTTCACACATTAGTTTATGGCCAACTACAGAAACCGGATGTTCTGTAGACTTCATATAGAAGAATATATTCAGTCAATCTAAAAATAGTCGTTTCTGGATAACGACAATCGAAGCATGTCGAGATATAAATATGTGGACCTGAAAAGTGCATCTGGCAGTGTTAATGTCATCGCCATTGTTAAACATGTTAAGAAACCGAAAAAAACCAAAGGTTCTTCATACTCACTATTTTTCTCGATCACTGATCCTTCTTTAAATGGTGATAAAATGTCATGCATTGTTTTCCATGATGCGGAAGGAAATTTACCTCAGATAATTAATAATTTATTTGGTATCTTTTTTCCAAAAGAGACTCAATAGCCTACTTGAGAGTGTAGTTCTAGCACTACCAATCA]

[+] EMBL AI977671             [CTTCTTCGGTCGATAAAACTCGCTGGAGGTTATCTGTAAAGCTCTTCATCCACTAAAATAAGCAGCCCCTGAAGCTTTTTCCTGTTATAGTTGTATTAACTTATCTTGTTATCAATGGGAAGCAGTTGCACTGATCAAACAAGTCAGTTTATGAATGAATTTCACACATTAGTTTATGGCCAACTACAGAAACCGGATGTTCTGTAGACTTCATATAGAAGAATATATTCAGTCAATCTAAAAATAGTCGTTTCTGGATAACGACAATCGAAGCATGTCGAGATATAAATATGTGGACCTGAAAAGTGCATCTGGCAGTGTTAATGTCATCGCCATTGTTAAACATGTTAAGAAACCGAAAAAAACCAAAGGTTCTTCATACTCACTATTTTTCTCGATCACTGATCCTTCTTTAAATGGTGATAAAATGTCATGCATTGTTTTCCATGATGCGGAAGGAAATTTACCTCAGATAATTAATAATTTATTTGGTATCTTTTTTCCAAAAGAGACTCAATAGCCTACTTGAGAGTGTAGTTCTAGCACTACCAATCA]




>consensus_1037#0
CTTCTTCGGTCGATAAAACTCGCTGGAGGTTATCTGTAAAGCTCTTCATCCACTAAAATA
AGCAGCCCCTGAAGCTTTTTCCTGTTATAGTTGTATTAACTTATCTTGTTATCAATGGGA
AGCAGTTGCACTGATCAAACAAGTCAGTTTATGAATGAATTTCACACATTAGTTTATGGC
CAACTACAGAAACCGGATGTTCTGTAGACTTCATATAGAAGAATATATTCAGTCAATCTA
AAAATAGTCGTTTCTGGATAACGACAATCGAAGCATGTCGAGATATAAATATGTGGACCT
GAAAAGTGCATCTGGCAGTGTTAATGTCATCGCCATTGTTAAACATGTTAAGAAACCGAA
AAAAACCAAAGGTTCTTCATACTCACTATTTTTCTCGATCACTGATCCTTCTTTAAATGG
TGATAAAATGTCATGCATTGTTTTCCATGATGCGGAAGGAAATTTACCTCAGATAATTAA
TAATTTATTTGGTATCTTTTTTCCAAAAGAGACTCAATAGCCTACTTGAGAGTGTAGTTC
TAGCACTACCAATCA

consensusID : consensus_1037#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [AAACCGAATCATTCTGCATTTTTATTGTCTGGGGGTTGACATTGTTTCTTCGGTCGATAAAACTCGCTGGAGGTTATCTGTAAAGCTCTTCATCCACTAAAATAAGCAGCCCCTGAAGCTTTTTCCTGTTATAGTTGTATTAACTTATCTTGTTATCAATGGGAAGCAGTTGGTAGGTCTACCTTGTAGCGCTAATGTAGAAGTATGTAACCCAATCTCCCGATTTTGGGGAAANGTATTACCGGTTTTGGGGAAGTCACATATAAAATGTCAGGGAAAATACGACAGAACTTCAAAT]

[+] EMBL CD130473             [AAACCGAATCATTCTGCATTTTTATTGTCTGGGGGTTGACATTGTTTCTTCGGTCGATAAAACTCGCTGGAGGTTATCTGTAAAGCTCTTCATCCACTAAAATAAGCAGCCCCTGAAGCTTTTTCCTGTTATAGTTGTATTAACTTATCTTGTTATCAATGGGAAGCAGTTGGTAGGTCTACCTTGTAGCGCTAATGTAGAAGTATGTAACCCAATCTCCCGATTTTGGGGAAANGTATTACCGGTTTTGGGGAAGTCACATATAAAATGTCAGGGAAAATACGACAGAACTTCAAAT]




>consensus_1037#1
AAACCGAATCATTCTGCATTTTTATTGTCTGGGGGTTGACATTGTTTCTTCGGTCGATAA
AACTCGCTGGAGGTTATCTGTAAAGCTCTTCATCCACTAAAATAAGCAGCCCCTGAAGCT
TTTTCCTGTTATAGTTGTATTAACTTATCTTGTTATCAATGGGAAGCAGTTGGTAGGTCT
ACCTTGTAGCGCTAATGTAGAAGTATGTAACCCAATCTCCCGATTTTGGGGAAANGTATT
ACCGGTTTTGGGGAAGTCACATATAAAATGTCAGGGAAAATACGACAGAACTTCAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1037#0      --------------------------------------------CTTCTTCGGTCGATAA 16
consensus_1037#1      AAACCGAATCATTCTGCATTTTTATTGTCTGGGGGTTGACATTGTTTCTTCGGTCGATAA 60
                                                                   ***************

consensus_1037#0      AACTCGCTGGAGGTTATCTGTAAAGCTCTTCATCCACTAAAATAAGCAGCCCCTGAAGCT 76
consensus_1037#1      AACTCGCTGGAGGTTATCTGTAAAGCTCTTCATCCACTAAAATAAGCAGCCCCTGAAGCT 120
                      ************************************************************

consensus_1037#0      TTTTCCTGTTATAGTTGTATTAACTTATCTTGTTATCAATGGGAAGCAGTTGCACTGATC 136
consensus_1037#1      TTTTCCTGTTATAGTTGTATTAACTTATCTTGTTATCAATGGGAAGCAGTTG-GTAGGTC 179
                      ****************************************************    * **

consensus_1037#0      AAACAAGTCAGTTTATGAATGAATTTCACACATTAGTTTATGGCCAACTACAGAAACCGG 196
consensus_1037#1      TACCTTGTAGCGCTAATGTAGAAGTATGTAACCCAATCTC---CCGATTTTGGGGA---A 233
                       * *  **     **     *** *    *    * * *    ** * *   *  *    

consensus_1037#0      ATGTTCTGTAGACTTCATATAGAAGA-ATATATTCAGTCAATCTAAAAATAGTCGT-TTC 254
consensus_1037#1      ANGTATTACCGGTTTTGGGGAAGTCACATATAAAATGTCAGGGAAAATACGACAGAACTT 293
                      * **  *   *  **     *    * *****    ****    *** *     *   * 

consensus_1037#0      TGGATAACGACAATCGAAGCATGTCGAGATATAAATATGTGGACCTGAAAAGTGCATCTG 314
consensus_1037#1      CAAAT------------------------------------------------------- 298
                         **                                                       

consensus_1037#0      GCAGTGTTAATGTCATCGCCATTGTTAAACATGTTAAGAAACCGAAAAAAACCAAAGGTT 374
consensus_1037#1      ------------------------------------------------------------
                                                                                  

consensus_1037#0      CTTCATACTCACTATTTTTCTCGATCACTGATCCTTCTTTAAATGGTGATAAAATGTCAT 434
consensus_1037#1      ------------------------------------------------------------
                                                                                  

consensus_1037#0      GCATTGTTTTCCATGATGCGGAAGGAAATTTACCTCAGATAATTAATAATTTATTTGGTA 494
consensus_1037#1      ------------------------------------------------------------
                                                                                  

consensus_1037#0      TCTTTTTTCCAAAAGAGACTCAATAGCCTACTTGAGAGTGTAGTTCTAGCACTACCAATC 554
consensus_1037#1      ------------------------------------------------------------
                                                                                  

consensus_1037#0      A 555
consensus_1037#1      -