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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 876 fasta sequence
[TACGAGGCCANAATTCGGCACGAGGGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT-CTTCAAGAACATTGTCAAAACAATAAAAATG-AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA-AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTTTAA]
[+] EMBL CD082531 [TACGAGGCCANAATTCGGCACGAGGGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCANAAAAAAAAAGAAACAGTTGAATAGTTCTAT ]
[+] EMBL CD133164 [ TTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGACAAAATAATGTTATAGATGA ]
[-] EMBL CD074696 [ GTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTAT ]
[+] EMBL CD141546 [ CTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTTNCTTC AGAACATTGTCAAAACAAATAAAATGAAACTACG AATGNACAGCCTAGT ]
[-] EMBL AI068257 [ AAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTCTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTTTAA]
[-] EMBL CD076127 [ CTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTAT ]
[+] EMBL AA629511 [ GACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTGGTTTCTGTTTTTTTNCCACTAAAAAATTTCCTCTCTTTTTTNCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACANATGTTTGTNTGAAATGAATGCACTTCTAACTTCGTNNGCTTTNCTTATGTNTATAANTNTCATTGGATTCTTTCTACATTGCAAAAT ]
[-] EMBL AI068126 [ TTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAGTAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTCTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTT ]
[-] EMBL AI067297 [ CGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTCTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTT ]
[+] EMBL AA566186 [ TTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATNNNCTCTCTTTTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATG ]
[-] EMBL CD076126 [ TTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTT ]
[-] EMBL CD074695 [ TTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTT ]
[-] EMBL AA999521 [ cgTAGTTCAGTAATAATGGTTTAATAATCCATAATTATTACCTAGTCCAAATTGGGCCTAGTTCGTCTTAATTTACAGAAGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTT ]
consensusID : consensus_10372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[GGCCAANAATTCGGCACGAGGCCTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAACCCCNNNNNNNNCAACTTCTTCAAGAACATTGTCAAAACAATAAAAATGAACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCNTTTTTGCAANAAAAAGAAACAGNTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTAGTCAGNNATAATGTTTAATATCTATAATTATTACCTAGTCCAAATTGGGGCTAGTCCTTTTATTTTACAGATGGTTGGATGAAATGATGCACCTCTACCTCGTTTTCTTTCTTATGATTAAAGGGGAATGGAATCTTTCTAATTGCAAAACATTTATATAATCCCTAGGGGTAAAGATACACAAAAACCTT]
[+] EMBL CD080771 [GGCCAANAATTCGGCACGAGGCCTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAACCCCNNNNNNNNCAACTTCTTCAAGAACATTGTCAAAACAATAAAAATGAACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCNTTTTTGCAANAAAAAGAAACAGNTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTAGTCAGNNATAATGTTTAATATCTATAATTATTACCTAGTCCAAATTGGGGCTAGTCCTTTTATTTTACAGATGGTTGGATGAAATGATGCACCTCTACCTCGTTTTCTTTCTTATGATTAAAGGGGAATGGAATCTTTCTAATTGCAAAACATTTATATAATCCCTAGGGGTAAAGATACACAAAAACCTT]
consensusID : consensus_10372#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence
[AATTGTGATTTATAACCAGTGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACCCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATNCAAGTAGAAAGCGTGGGAATTT]
[+] EMBL CD141394 [AATTGTGATTTATAACCAGTGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACCCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATNCAAGTAGAAAGCGTGGGAATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10372#0 TACGAGGCCANAATTCGGCACGAGGGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCA 60
consensus_10372#2 -----AATTGTGATTTATAACCAGTGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCA 55
consensus_10372#1 ------------------------GGCCAANAAT--TCGGCACGAGGCCTGAGTTAATCA 34
** ** * * * * ***********
consensus_10372#0 GCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATG 120
consensus_10372#2 GCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATG 115
consensus_10372#1 GCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATG 94
************************************************************
consensus_10372#0 GCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTT 180
consensus_10372#2 GCCGATTAATTACCCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTT 175
consensus_10372#1 GCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTT 154
************* **********************************************
consensus_10372#0 CGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAA 240
consensus_10372#2 CGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAA 235
consensus_10372#1 CGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAA 214
************************************************************
consensus_10372#0 ACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTA 300
consensus_10372#2 ACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATNCAAGTA 295
consensus_10372#1 ACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTA 274
***************************************************** *****
consensus_10372#0 GAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGA 360
consensus_10372#2 GAAAGCGTGGGAATTT-------------------------------------------- 311
consensus_10372#1 GAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGA 334
****************
consensus_10372#0 ATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATG 420
consensus_10372#2 ------------------------------------------------------------
consensus_10372#1 ATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATG 394
consensus_10372#0 AATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAG 480
consensus_10372#2 ------------------------------------------------------------
consensus_10372#1 AATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAACCCC 454
consensus_10372#0 ATATATTACAACTTCTTCAAGAACATTGTCAAAACAATAAAAATGAACTACGAAATGAAC 540
consensus_10372#2 ------------------------------------------------------------
consensus_10372#1 NNNNNNNNCAACTTCTTCAAGAACATTGTCAAAACAATAAAAATGAACTACGAAATGAAC 514
consensus_10372#0 AGCCTAGTTTGTATTAATTATGCTTTTTGCAAAAAAAAAAGAAACAGTTGAATAGTTCTA 600
consensus_10372#2 ------------------------------------------------------------
consensus_10372#1 AGCCTAGTTTGTATTAATTATGCNTTTTTGCAANAAAAAGAAACAGNTGAATAGTTCTAT 574
consensus_10372#0 TTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTC 660
consensus_10372#2 ------------------------------------------------------------
consensus_10372#1 TTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCT 634
consensus_10372#0 TTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAG 720
consensus_10372#2 ------------------------------------------------------------
consensus_10372#1 AGTCAGNNATAATGTTTAATATCTATAATTATTACCTAGTCCAAATTGGGGCTAGTCCTT 694
consensus_10372#0 TTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTT 780
consensus_10372#2 ------------------------------------------------------------
consensus_10372#1 TTATTTTACAGATGGTTGGATGAAATGATGCACCTCTACCTCGTTTTCTTTCTTATGATT 754
consensus_10372#0 CTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTC 840
consensus_10372#2 ------------------------------------------------------------
consensus_10372#1 AAAGGGGAATGGAATCTTTCTAATTGCAAAACATTTATATAATCCCTAGGGGTAAAGATA 814
consensus_10372#0 CTATGGGTTAATGATTACTAATAAAACCTTCTTTAA 876
consensus_10372#2 ------------------------------------
consensus_10372#1 CACAAAAACCTT------------------------ 826
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||