These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [GAATCCAGCCTTTCAGTTAATTACGCTTTACAATTGAGGAAAAAATACATCAACTGCCTCTTTTTTGGTGGTTTACACTGGAACATCTTGGTTCTCGTCTATCATTTTTAACCGTGATGGGATATTTTTCACTTTAAACTAGATCCTGGTTTATGACAGCCAGTTTCACAATGTTGTGCTTTGTCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTCATGATGTTCATGATGATGTCCAGCTGAAGTGAAGAATATAAAGAAATTCAATGAATCAGGTTTACTGTGTGGATGAGCCATCCATTTAGTTTTTGTGTGTGTGAGTTAAAAACAGAAAACCGACGCTTTATAATAAAAGATCAGTCATGGCTTAGTGCATCTGGTGCATCTGGTAATGAATATTTTAATTTTGACTATTTATGTTTACTAATGTTAGTACGTGACTGGATTATGATTAAAGCACANATTTATTAGAACCCATGGACGGAAATAAGCGTTAGCCCAAACTCATACATAACTCTGTAACCCTAAACAACAGTCAAGATTGTTTGTCGTTTCATATTGATAATCATGGCTAGACGTGATTNCTGTGTTCGAACCGACTTCTCTACAGATTCAGCGAGGACCATCACAGTCGACTAACTGCCACTACCATGAGTATGGACTATGTCTAATATACTCTAGTAATCGATACAAGTGATATGGTCTATGTTCAATATGGAGAATAAACTTCTGTTA] [+] EMBL CD081971 [GAATCCAGCCTTTCAGTTAATTACGCTTTACAATTGAGGAAAAAATACATCAACTGCCTCTTTTTTGGTGGTTTACACTGGAACATCTTGGTTCTCGTCTATCATTTTTAACCGTGATGGGATATTTTTCACTTTAAACTAGATCCTGGTTTATGACAGCCAGTTTCACAATGTTGTGCTTTGTCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTCATGATGTTCATGATGATGTCCAGCTGAAGTGAAGAATATAAAGAAATTCAATGAATCAGGTTTACTGTGTGGATGAGCCATCCATTTAGTTTTTGTGTGTGTGAGTTAAAAACAGAAAACCGACGCTTTATAATAAAAGATCAGTCATGGCTTAGTGCATCTGGTGCATCTGGTAATGAATATTTTAATTTTGACTATTTATGTTTACTAATGTTAGTACGTGACTGGATTATGATTAAAGCACANATTTATTAGAACCCATGGACGGAAATAAGCGTTAGCCCAAACTCATACATAACTCTGTAACCCTAAACAACAGTCAAGATTGTTTGTCGTTTCATATTGATAATCATGGCTAGACGTGATTNCTGTGTTCGAACCGACTTCTCTACAGATTCAGCGAGGACCATCACAGTCGACTAACTGCCACTACCATGAGTATGGACTATGTCTAATATACTCTAGTAATCGATACAAGTGATATGGTCTATGTTCAATATGGAGAATAAACTTCTGTTA] consensusID : consensus_10375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 390 fasta sequence [AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT-ACTTTGTGTTAGTTATTTTAAA-GAAATAATTTGATGAACTATCTAGGAA-TTTCTGTTATATAT-AATTAGTGACCACCGTGATC-TTTTCCAGATCCTGGTTTATGACAG-CCAGTTTCACAATGTTGTGCTTTG-TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC-TTCATGATG-TT-CATGATGATGTCCAGAT-CCGTGAGAAGACATGGTTGATAATAACTGTTGTTGAGTTTAAGAGTTACTTCATATTCTGTTCGTGCACAGCTTCGTTTATATA] [+] EMBL AA999212 [AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT ANTTNGNGACCACCGNGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTNGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCC ] [+] EMBL AA999211 [AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT AATTNGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTG ] [+] EMBL SMAA43836 [AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT AATTGGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATTCATGACCAGCAGCATC ] [-] EMBL AA559771 [ AATGTANATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGNGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAATTTTCTGTTATATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTANGACAG CCAGTTTCACAANGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGANGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTTCATGATG TT ] [-] EMBL AA559520 [ ATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTANCTAGGAA TTTCTGTTATATAT AATTAGTGACCACCGTGAAC TTTTCCAGAACCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGANCCATGACCAGCAGCA ] [-] EMBL AA559706 [ TATATTGTTAATAAAATGTC ATAGTT AC TTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACNNTCTAGGAA TTTCTGT ] [-] EMBL AI438723 [ TTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TT CATGATGATGTCCAGAT CCGTGAGAAGACATGGTTGATAATAACTGTTGTTGAGTTTAAGAGTTACTTCATATTCTGTTCGTGCACAGCTTCGTTTATATA] [-] EMBL AA559702 [ TGTTAATAAAATGTCAATAGNT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TNTCNGTTATATAT AANTAGTGACCACCGTGATN TTTTCCAGATCCNGGTTTATGACAG CCAGTTTCANAANGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TTNCATGANGATGTCCAGAT CCGTGAGAAGACATGGTT ] [-] EMBL AA559589 [ AATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATNTAGGNA TTTCTGTTATATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATNTTTGTNGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TT CATGATGATGTCCAGAT CCGTGAGAA ] [-] EMBL AA559473 [ CAATAGTA ACTTGGTGTTNGTTATTTTAAA GAAATAATTNGANGAACTATCTAGGAA TTTCTGTTAAATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTANGACAG CCAGTTTCACAATGTTGTGCTTNG TCATGAGATCCATGACCAGCAGCATCTTTGTCGNGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TTNCANGATGATGTCCAGAT CCGTGAGAAG ] [-] EMBL AA559495 [ AGTTAACTTTGTGTTAGTTATTTTAAAGGAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT AATTAGTGACCACCGTGANC TTTTCCAGANCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCANCTTTGACGTGGCAGACTTTCGGACAGTGTTCAGATGATGTGCAATGCANTTTGCCTTCATGACCATGATGGCCTAC TTCATGATG TT CATGATGATGTCCAGAN CCGTGAGAAGACATGGTTGATAATAAC ] [-] EMBL AA559521 [ a ACTTTGTGTTAGTTATTTTAAAGGAAATAATTTGATGAACTATNTAGGAA TTTCTGTTATATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TT CATGATGATGTCCAGAT CCGTGAGAAGACATGGTT ] [-] EMBL AA559769 [ TTTCTGTTATATATAAATTAGTGACCACCGTGATCTTTTTCCAGATCCTGGTTTATGACAGCCCAGTTTCACAATGTTGTGCTTTGTTCATGAGATCCATGACCAGCAGCATNTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTTCATGATGTTT CATGATGATGTCCAGATCCCGTGAGAAGACATGGTTGATAATAACTGTTGTT ] consensusID : consensus_10375#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [CAATAGGTACTTTGTGTTAGTTATTTTANAGAAATAATTTGANGNAANTATGATAGGAANTTCTGTTATATATAATTAGTGACCACCGTGATCTTTTCCAGATCNTGGTTTNTGACAGCCAGTTTCACAANGTTGTGCTTTGTCATGAGATTCCATGACCAGCAGCATCCTTTGTGGTGGCAGTCTNTCGGACAGTGTTCAGATGATGTGTCAATGNTGTTTGCCTTCAAGACCATGATGGCCTTNTTCATGATGTTCATGATGATG] [-] EMBL AA559619 [CAATAGGTACTTTGTGTTAGTTATTTTANAGAAATAATTTGANGNAANTATGATAGGAANTTCTGTTATATATAATTAGTGACCACCGTGATCTTTTCCAGATCNTGGTTTNTGACAGCCAGTTTCACAANGTTGTGCTTTGTCATGAGATTCCATGACCAGCAGCATCCTTTGTGGTGGCAGTCTNTCGGACAGTGTTCAGATGATGTGTCAATGNTGTTTGCCTTCAAGACCATGATGGCCTTNTTCATGATGTTCATGATGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10375#1 ----------AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTTACTTT 50 consensus_10375#2 -----------------------------------------------CAATAGGTACTTT 13 consensus_10375#0 GAATCCAGCCTTTCAGTTAATTACGCTTTACAATTGAGGAAAAAATACATCAACTGCCTC 60 ** * * * * consensus_10375#1 GTGTTAGTTATTTTAAA--GAAATAATTTGATGAA-CTATC-TAGGAATTTCTGTTATAT 106 consensus_10375#2 GTGTTAGTTATTTTANA--GAAATAATTTGANGNAANTATGATAGGAANTTCTGTTATAT 71 consensus_10375#0 TTTTTTGGTGGTTTACACTGGAACATCTTGGTTC--TCGTC-TATCATTTTTAACCGTGA 117 * ** * * **** * * ** * *** * ** * ** * consensus_10375#1 ATAATTAGTGACCACCGTGATCTTTTCCAGATCCTGGTTTATGACAGCCAGTTTCACAAT 166 consensus_10375#2 ATAATTAGTGACCACCGTGATCTTTTCCAGATCNTGGTTTNTGACAGCCAGTTTCACAAN 131 consensus_10375#0 TGGGATATTTTTCACTTTAAACT-----AGATCCTGGTTTATGACAGCCAGTTTCACAAT 172 ** * *** * * ** ***** ****** ****************** consensus_10375#1 GTTGTGCTTTGTCATGAGAT-CCATGACCAGCAGCATC-TTTGTCGTGGCAGTCTTTCGG 224 consensus_10375#2 GTTGTGCTTTGTCATGAGATTCCATGACCAGCAGCATCCTTTGTGGTGGCAGTCTNTCGG 191 consensus_10375#0 GTTGTGCTTTGTCATGAGAT-CCATGACCAGCAGCATC-TTTGTCGTGGCAGTCTTTCGG 230 ******************** ***************** ***** ********** **** consensus_10375#1 ACAGTGTTCAGATGATGTG-CAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTCAT 283 consensus_10375#2 ACAGTGTTCAGATGATGTGTCAATGNTGTTTGCCTTCAAGACCATGATGGCCTTNTTCAT 251 consensus_10375#0 ACAGTGTTCAGATGATGTG-CAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTCAT 289 ******************* ***** * ********** *************** ***** consensus_10375#1 GATGTTCATGATGATGTCCAGATCCGTGAGAAGACATGGTTGA---TAATAACTGTTGTT 340 consensus_10375#2 GATGTTCATGATGATG-------------------------------------------- 267 consensus_10375#0 GATGTTCATGATGATGTCCAGCTGAAGTGAAGAATATAAAGAAATTCAATGAATCAGGTT 349 **************** consensus_10375#1 GAGTTTAAGAGTTA-CTTCATATTCTGTTCGTGCACAGCTTCGTTTATATA--------- 390 consensus_10375#2 ------------------------------------------------------------ consensus_10375#0 TACTGTGTGGATGAGCCATCCATTTAGTTTTTGTGTGTGTGAGTTAAAAACAGAAAACCG 409 consensus_10375#1 ------------------------------------------------------------ consensus_10375#2 ------------------------------------------------------------ consensus_10375#0 ACGCTTTATAATAAAAGATCAGTCATGGCTTAGTGCATCTGGTGCATCTGGTAATGAATA 469 consensus_10375#1 ------------------------------------------------------------ consensus_10375#2 ------------------------------------------------------------ consensus_10375#0 TTTTAATTTTGACTATTTATGTTTACTAATGTTAGTACGTGACTGGATTATGATTAAAGC 529 consensus_10375#1 ------------------------------------------------------------ consensus_10375#2 ------------------------------------------------------------ consensus_10375#0 ACANATTTATTAGAACCCATGGACGGAAATAAGCGTTAGCCCAAACTCATACATAACTCT 589 consensus_10375#1 ------------------------------------------------------------ consensus_10375#2 ------------------------------------------------------------ consensus_10375#0 GTAACCCTAAACAACAGTCAAGATTGTTTGTCGTTTCATATTGATAATCATGGCTAGACG 649 consensus_10375#1 ------------------------------------------------------------ consensus_10375#2 ------------------------------------------------------------ consensus_10375#0 TGATTNCTGTGTTCGAACCGACTTCTCTACAGATTCAGCGAGGACCATCACAGTCGACTA 709 consensus_10375#1 ------------------------------------------------------------ consensus_10375#2 ------------------------------------------------------------ consensus_10375#0 ACTGCCACTACCATGAGTATGGACTATGTCTAATATACTCTAGTAATCGATACAAGTGAT 769 consensus_10375#1 ------------------------------------- consensus_10375#2 ------------------------------------- consensus_10375#0 ATGGTCTATGTTCAATATGGAGAATAAACTTCTGTTA 806 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||