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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[GAATCCAGCCTTTCAGTTAATTACGCTTTACAATTGAGGAAAAAATACATCAACTGCCTCTTTTTTGGTGGTTTACACTGGAACATCTTGGTTCTCGTCTATCATTTTTAACCGTGATGGGATATTTTTCACTTTAAACTAGATCCTGGTTTATGACAGCCAGTTTCACAATGTTGTGCTTTGTCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTCATGATGTTCATGATGATGTCCAGCTGAAGTGAAGAATATAAAGAAATTCAATGAATCAGGTTTACTGTGTGGATGAGCCATCCATTTAGTTTTTGTGTGTGTGAGTTAAAAACAGAAAACCGACGCTTTATAATAAAAGATCAGTCATGGCTTAGTGCATCTGGTGCATCTGGTAATGAATATTTTAATTTTGACTATTTATGTTTACTAATGTTAGTACGTGACTGGATTATGATTAAAGCACANATTTATTAGAACCCATGGACGGAAATAAGCGTTAGCCCAAACTCATACATAACTCTGTAACCCTAAACAACAGTCAAGATTGTTTGTCGTTTCATATTGATAATCATGGCTAGACGTGATTNCTGTGTTCGAACCGACTTCTCTACAGATTCAGCGAGGACCATCACAGTCGACTAACTGCCACTACCATGAGTATGGACTATGTCTAATATACTCTAGTAATCGATACAAGTGATATGGTCTATGTTCAATATGGAGAATAAACTTCTGTTA]
[+] EMBL CD081971 [GAATCCAGCCTTTCAGTTAATTACGCTTTACAATTGAGGAAAAAATACATCAACTGCCTCTTTTTTGGTGGTTTACACTGGAACATCTTGGTTCTCGTCTATCATTTTTAACCGTGATGGGATATTTTTCACTTTAAACTAGATCCTGGTTTATGACAGCCAGTTTCACAATGTTGTGCTTTGTCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTCATGATGTTCATGATGATGTCCAGCTGAAGTGAAGAATATAAAGAAATTCAATGAATCAGGTTTACTGTGTGGATGAGCCATCCATTTAGTTTTTGTGTGTGTGAGTTAAAAACAGAAAACCGACGCTTTATAATAAAAGATCAGTCATGGCTTAGTGCATCTGGTGCATCTGGTAATGAATATTTTAATTTTGACTATTTATGTTTACTAATGTTAGTACGTGACTGGATTATGATTAAAGCACANATTTATTAGAACCCATGGACGGAAATAAGCGTTAGCCCAAACTCATACATAACTCTGTAACCCTAAACAACAGTCAAGATTGTTTGTCGTTTCATATTGATAATCATGGCTAGACGTGATTNCTGTGTTCGAACCGACTTCTCTACAGATTCAGCGAGGACCATCACAGTCGACTAACTGCCACTACCATGAGTATGGACTATGTCTAATATACTCTAGTAATCGATACAAGTGATATGGTCTATGTTCAATATGGAGAATAAACTTCTGTTA]
consensusID : consensus_10375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 390 fasta sequence
[AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT-ACTTTGTGTTAGTTATTTTAAA-GAAATAATTTGATGAACTATCTAGGAA-TTTCTGTTATATAT-AATTAGTGACCACCGTGATC-TTTTCCAGATCCTGGTTTATGACAG-CCAGTTTCACAATGTTGTGCTTTG-TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC-TTCATGATG-TT-CATGATGATGTCCAGAT-CCGTGAGAAGACATGGTTGATAATAACTGTTGTTGAGTTTAAGAGTTACTTCATATTCTGTTCGTGCACAGCTTCGTTTATATA]
[+] EMBL AA999212 [AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT ANTTNGNGACCACCGNGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTNGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCC ]
[+] EMBL AA999211 [AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT AATTNGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTG ]
[+] EMBL SMAA43836 [AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT AATTGGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATTCATGACCAGCAGCATC ]
[-] EMBL AA559771 [ AATGTANATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGNGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAATTTTCTGTTATATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTANGACAG CCAGTTTCACAANGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGANGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTTCATGATG TT ]
[-] EMBL AA559520 [ ATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTANCTAGGAA TTTCTGTTATATAT AATTAGTGACCACCGTGAAC TTTTCCAGAACCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGANCCATGACCAGCAGCA ]
[-] EMBL AA559706 [ TATATTGTTAATAAAATGTC ATAGTT AC TTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACNNTCTAGGAA TTTCTGT ]
[-] EMBL AI438723 [ TTGTTAATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TT CATGATGATGTCCAGAT CCGTGAGAAGACATGGTTGATAATAACTGTTGTTGAGTTTAAGAGTTACTTCATATTCTGTTCGTGCACAGCTTCGTTTATATA]
[-] EMBL AA559702 [ TGTTAATAAAATGTCAATAGNT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATCTAGGAA TNTCNGTTATATAT AANTAGTGACCACCGTGATN TTTTCCAGATCCNGGTTTATGACAG CCAGTTTCANAANGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TTNCATGANGATGTCCAGAT CCGTGAGAAGACATGGTT ]
[-] EMBL AA559589 [ AATAAAATGTCAATAGTT ACTTTGTGTTAGTTATTTTAAA GAAATAATTTGATGAACTATNTAGGNA TTTCTGTTATATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATNTTTGTNGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TT CATGATGATGTCCAGAT CCGTGAGAA ]
[-] EMBL AA559473 [ CAATAGTA ACTTGGTGTTNGTTATTTTAAA GAAATAATTNGANGAACTATCTAGGAA TTTCTGTTAAATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTANGACAG CCAGTTTCACAATGTTGTGCTTNG TCATGAGATCCATGACCAGCAGCATCTTTGTCGNGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TTNCANGATGATGTCCAGAT CCGTGAGAAG ]
[-] EMBL AA559495 [ AGTTAACTTTGTGTTAGTTATTTTAAAGGAAATAATTTGATGAACTATCTAGGAA TTTCTGTTATATAT AATTAGTGACCACCGTGANC TTTTCCAGANCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCANCTTTGACGTGGCAGACTTTCGGACAGTGTTCAGATGATGTGCAATGCANTTTGCCTTCATGACCATGATGGCCTAC TTCATGATG TT CATGATGATGTCCAGAN CCGTGAGAAGACATGGTTGATAATAAC ]
[-] EMBL AA559521 [ a ACTTTGTGTTAGTTATTTTAAAGGAAATAATTTGATGAACTATNTAGGAA TTTCTGTTATATAT AATTAGTGACCACCGTGATC TTTTCCAGATCCTGGTTTATGACAG CCAGTTTCACAATGTTGTGCTTTG TCATGAGATCCATGACCAGCAGCATCTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTC TTCATGATG TT CATGATGATGTCCAGAT CCGTGAGAAGACATGGTT ]
[-] EMBL AA559769 [ TTTCTGTTATATATAAATTAGTGACCACCGTGATCTTTTTCCAGATCCTGGTTTATGACAGCCCAGTTTCACAATGTTGTGCTTTGTTCATGAGATCCATGACCAGCAGCATNTTTGTCGTGGCAGTCTTTCGGACAGTGTTCAGATGATGTGCAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTTCATGATGTTT CATGATGATGTCCAGATCCCGTGAGAAGACATGGTTGATAATAACTGTTGTT ]
consensusID : consensus_10375#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[CAATAGGTACTTTGTGTTAGTTATTTTANAGAAATAATTTGANGNAANTATGATAGGAANTTCTGTTATATATAATTAGTGACCACCGTGATCTTTTCCAGATCNTGGTTTNTGACAGCCAGTTTCACAANGTTGTGCTTTGTCATGAGATTCCATGACCAGCAGCATCCTTTGTGGTGGCAGTCTNTCGGACAGTGTTCAGATGATGTGTCAATGNTGTTTGCCTTCAAGACCATGATGGCCTTNTTCATGATGTTCATGATGATG]
[-] EMBL AA559619 [CAATAGGTACTTTGTGTTAGTTATTTTANAGAAATAATTTGANGNAANTATGATAGGAANTTCTGTTATATATAATTAGTGACCACCGTGATCTTTTCCAGATCNTGGTTTNTGACAGCCAGTTTCACAANGTTGTGCTTTGTCATGAGATTCCATGACCAGCAGCATCCTTTGTGGTGGCAGTCTNTCGGACAGTGTTCAGATGATGTGTCAATGNTGTTTGCCTTCAAGACCATGATGGCCTTNTTCATGATGTTCATGATGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10375#1 ----------AAATGTATATTTAGAATTTATATTGTTAATAAAATGTCAATAGTTACTTT 50
consensus_10375#2 -----------------------------------------------CAATAGGTACTTT 13
consensus_10375#0 GAATCCAGCCTTTCAGTTAATTACGCTTTACAATTGAGGAAAAAATACATCAACTGCCTC 60
** * * * *
consensus_10375#1 GTGTTAGTTATTTTAAA--GAAATAATTTGATGAA-CTATC-TAGGAATTTCTGTTATAT 106
consensus_10375#2 GTGTTAGTTATTTTANA--GAAATAATTTGANGNAANTATGATAGGAANTTCTGTTATAT 71
consensus_10375#0 TTTTTTGGTGGTTTACACTGGAACATCTTGGTTC--TCGTC-TATCATTTTTAACCGTGA 117
* ** * * **** * * ** * *** * ** * ** *
consensus_10375#1 ATAATTAGTGACCACCGTGATCTTTTCCAGATCCTGGTTTATGACAGCCAGTTTCACAAT 166
consensus_10375#2 ATAATTAGTGACCACCGTGATCTTTTCCAGATCNTGGTTTNTGACAGCCAGTTTCACAAN 131
consensus_10375#0 TGGGATATTTTTCACTTTAAACT-----AGATCCTGGTTTATGACAGCCAGTTTCACAAT 172
** * *** * * ** ***** ****** ******************
consensus_10375#1 GTTGTGCTTTGTCATGAGAT-CCATGACCAGCAGCATC-TTTGTCGTGGCAGTCTTTCGG 224
consensus_10375#2 GTTGTGCTTTGTCATGAGATTCCATGACCAGCAGCATCCTTTGTGGTGGCAGTCTNTCGG 191
consensus_10375#0 GTTGTGCTTTGTCATGAGAT-CCATGACCAGCAGCATC-TTTGTCGTGGCAGTCTTTCGG 230
******************** ***************** ***** ********** ****
consensus_10375#1 ACAGTGTTCAGATGATGTG-CAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTCAT 283
consensus_10375#2 ACAGTGTTCAGATGATGTGTCAATGNTGTTTGCCTTCAAGACCATGATGGCCTTNTTCAT 251
consensus_10375#0 ACAGTGTTCAGATGATGTG-CAATGCTCTTTGCCTTCATGACCATGATGGCCTTCTTCAT 289
******************* ***** * ********** *************** *****
consensus_10375#1 GATGTTCATGATGATGTCCAGATCCGTGAGAAGACATGGTTGA---TAATAACTGTTGTT 340
consensus_10375#2 GATGTTCATGATGATG-------------------------------------------- 267
consensus_10375#0 GATGTTCATGATGATGTCCAGCTGAAGTGAAGAATATAAAGAAATTCAATGAATCAGGTT 349
****************
consensus_10375#1 GAGTTTAAGAGTTA-CTTCATATTCTGTTCGTGCACAGCTTCGTTTATATA--------- 390
consensus_10375#2 ------------------------------------------------------------
consensus_10375#0 TACTGTGTGGATGAGCCATCCATTTAGTTTTTGTGTGTGTGAGTTAAAAACAGAAAACCG 409
consensus_10375#1 ------------------------------------------------------------
consensus_10375#2 ------------------------------------------------------------
consensus_10375#0 ACGCTTTATAATAAAAGATCAGTCATGGCTTAGTGCATCTGGTGCATCTGGTAATGAATA 469
consensus_10375#1 ------------------------------------------------------------
consensus_10375#2 ------------------------------------------------------------
consensus_10375#0 TTTTAATTTTGACTATTTATGTTTACTAATGTTAGTACGTGACTGGATTATGATTAAAGC 529
consensus_10375#1 ------------------------------------------------------------
consensus_10375#2 ------------------------------------------------------------
consensus_10375#0 ACANATTTATTAGAACCCATGGACGGAAATAAGCGTTAGCCCAAACTCATACATAACTCT 589
consensus_10375#1 ------------------------------------------------------------
consensus_10375#2 ------------------------------------------------------------
consensus_10375#0 GTAACCCTAAACAACAGTCAAGATTGTTTGTCGTTTCATATTGATAATCATGGCTAGACG 649
consensus_10375#1 ------------------------------------------------------------
consensus_10375#2 ------------------------------------------------------------
consensus_10375#0 TGATTNCTGTGTTCGAACCGACTTCTCTACAGATTCAGCGAGGACCATCACAGTCGACTA 709
consensus_10375#1 ------------------------------------------------------------
consensus_10375#2 ------------------------------------------------------------
consensus_10375#0 ACTGCCACTACCATGAGTATGGACTATGTCTAATATACTCTAGTAATCGATACAAGTGAT 769
consensus_10375#1 -------------------------------------
consensus_10375#2 -------------------------------------
consensus_10375#0 ATGGTCTATGTTCAATATGGAGAATAAACTTCTGTTA 806
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||