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Schistosoma mansoni
cluster # 10377 cluster # 10377       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10377#0 length = 671 sequences # 13  
consensus_10377#1 length = 480 sequences # 1  
consensus_10377#2 length = 280 sequences # 1  

consensusID : consensus_10377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 671
fasta sequence
                              [TTGTCCTGGCAACATGAGCATGGGTTAACAATAAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA-TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAGTGATGTTTA]

[+] EMBL CD133102             [TTGTCCTGGCAACATGAGCATGGGTTAACAATATACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCAACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGA                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD132743             [                  CATGGGTTAACAATAAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTAGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAGTGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGACCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATT                                                                                                                                                                                                                                                                        ]
[+] EMBL CD169127             [                                AAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTG                                                                                                                                                              ]
[+] EMBL CD161308             [                                    AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCTTAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAGTGATGTTTA]
[+] EMBL CD161135             [                                    AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCA                                ]
[+] EMBL CD161007             [                                    AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAAC                                            ]
[-] EMBL BG931965             [                                                                                                          TCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGAC                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD141348             [                                                                                                                                                               AAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATACTCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATGTATA TGATAGAGTCTATGTGTTT                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD141560             [                                                                                                                                                               AAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATACTCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTAC                                                                                                                                                                                                                                                                                               ]
[-] EMBL AI977478             [                                                                                                                                                                  TGTCGTGGTATTCCACAACTAGTACTAGTAACATCAAAATGATCCAGCAAGAATGAGATCACATTGAATAGTCAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAATAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAG         ]
[-] EMBL SMAA14102            [                                                                                                                                                                                                                                                                                                                                                                  ATATATATATTGATAGAGTCTATGTGTTTACAAAGG   TGATCCTGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCC                                                                                                                                                     ]
[-] EMBL CD200321             [                                                                                                                                                                                                                                                                                                                                                                     TATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATT                                                          ]
[-] EMBL AA791335             [                                                                                                                                                                                                                                                                                                                                                                                                                          gttcctgtCATTATTGG ATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCAC                               ]


>consensus_10377#0 TTGTCCTGGCAACATGAGCATGGGTTAACAATAAACAATTAGATAGATTGATCAATATAC AACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGC TGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAA CTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAA GAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCA AAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATAT ATATGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACAT TATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAA TGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCA CCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCA CAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGT AGTGATGTTTA



consensusID : consensus_10377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence
                              [ATACTTTATTGATATAAAAACAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTGTCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGGAGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTTCAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATGGTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG]

[+] EMBL SMAA69899            [ATACTTTATTGATATAAAAACAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTGTCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGGAGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTTCAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATGGTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG]


>consensus_10377#1 ATACTTTATTGATATAAAAACAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACA TTAAATCATTCAAGTAATTGTCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGA TAGATTGACCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTG AGATCATGGGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAG TGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCA CATTGAATAGCCAATAGGAGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTT GCCCAGGACCAGGCACTTCAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCC AACATCCCATTTTATATGGTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG



consensusID : consensus_10377#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence
                              [CAGATCCAGCACTCCACANCNATTTNCNAAGAAGNACCAATGATGTAATGGAATGATNCCCNCATACCACANATATATATGATAGAGTCTATGTGTTTACCAANGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAANCAAATGATATCACCGTATTATTGCACATCACGCCTTCAATACTTATAATAATGATAATNGTGGTGATATAGATGTGATTGTCTGTNCTGATCCCGAATCATCAACTTGTCACCATAGTNTCAACTTCATTGTTG]

[-] EMBL SM6262               [CAGATCCAGCACTCCACANCNATTTNCNAAGAAGNACCAATGATGTAATGGAATGATNCCCNCATACCACANATATATATGATAGAGTCTATGTGTTTACCAANGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAANCAAATGATATCACCGTATTATTGCACATCACGCCTTCAATACTTATAATAATGATAATNGTGGTGATATAGATGTGATTGTCTGTNCTGATCCCGAATCATCAACTTGTCACCATAGTNTCAACTTCATTGTTG]


>consensus_10377#2 CAGATCCAGCACTCCACANCNATTTNCNAAGAAGNACCAATGATGTAATGGAATGATNCC CNCATACCACANATATATATGATAGAGTCTATGTGTTTACCAANGGTGATGATCATGAGA GATTCACATAGATACATTATTGGAANCAAATGATATCACCGTATTATTGCACATCACGCC TTCAATACTTATAATAATGATAATNGTGGTGATATAGATGTGATTGTCTGTNCTGATCCC GAATCATCAACTTGTCACCATAGTNTCAACTTCATTGTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10377#0      TTGTCCTGGCAACATGAGCATGGGTTAACAATAAACAATTAGATAGATTGATCAATATAC 60
consensus_10377#2      ------------------------------------------------------------
consensus_10377#1      ------------------------------------------------------------
                                                                                   

consensus_10377#0      AACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGC 120
consensus_10377#2      ------------------------------------------------------------
consensus_10377#1      ------------------------------------------------------------
                                                                                   

consensus_10377#0      TGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAA 180
consensus_10377#2      ------------------------------------------------------------
consensus_10377#1      ------------------------------------------------------------
                                                                                   

consensus_10377#0      CTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAA 240
consensus_10377#2      ------------------------------------------------------------
consensus_10377#1      ----------------------------------------ATACTTTATTGATATAAAAA 20
                                                                                   

consensus_10377#0      GAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTC- 299
consensus_10377#2      ---------------------------------------------CAGATCCAGCACTC- 14
consensus_10377#1      CAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTG 80
                                                                        ** ** * *  

consensus_10377#0      -AAAATCAATTTGCAAAGAAGT-AC-AATGATGTAATGAAATGATC--CAAACATACCAA 354
consensus_10377#2      -CACANCNATTTNCNAAGAAGN-ACCAATGATGTAATGGAATGATN--CCCNCATACCAC 70
consensus_10377#1      TCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAAC 140
                         *   * *  *    *   *  *  *** *   * ** *  ***   *    **** * 

consensus_10377#0      ATATATATATGATAGAGTCTATGTGTTTAC-AAAGGTG-ATGATCATGAGAGA---TTCA 409
consensus_10377#2      ANATATATATGATAGAGTCTATGTGTTTACCAANGGTG-ATGATCATGAGAGA---TTCA 126
consensus_10377#1      ATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGG 200
                       *   ****    *  *    **  ****    *   *    ******* ****    *  

consensus_10377#0      CATAGATACATTATTGGAATCAAATGAT-----ATCACCTTATTATTGCACATTACGCCT 464
consensus_10377#2      CATAGATACATTATTGGAANCAAATGAT-----ATCACCGTATTATTGCACATCACGCCT 181
consensus_10377#1      TTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACT 260
                         *  *   * **  * **  * * * *     ** *   * *  * * *    **  **

consensus_10377#0      TCAATACTTATAATA----ATGAT--AATGATGGTGATAT-AGATGTGATTGTCTGTACT 517
consensus_10377#2      TCAATACTTATAATA----ATGAT--AATNGTGGTGATAT-AGATGTGATTGTCTGTNCT 234
consensus_10377#1      --AGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGG 318
                         * ****  *** *    *****  *       *** ** * **   ** * *  *   

consensus_10377#0      GATCCCGAATCATCAACTTGTC-ACCAT--AGTTTCAACTTCATTGTTGATTATTGGATT 574
consensus_10377#2      GATCCCGAATCATCAACTTGTC-ACCAT--AGTNTCAACTTCATTGTTG----------- 280
consensus_10377#1      AGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTT 378
                             * ** ****  ** *  *****  * * ** * **       *           

consensus_10377#0      AATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATA 634
consensus_10377#2      ------------------------------------------------------------
consensus_10377#1      CAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATG 438
                                                                                   

consensus_10377#0      TTTCACCATTCTAAACACCACATAGTAGTGATGTTTA----- 671
consensus_10377#2      ------------------------------------------
consensus_10377#1      GTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG 480
                                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)